Wall clock time and date at job start Tue Mar 31 2020 17:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.87267 * 2 1 4 4 C 1.54323 * 109.87761 * 238.98399 * 2 1 3 5 5 H 1.09000 * 110.87293 * 144.34312 * 4 2 1 6 6 C 1.50697 * 110.72071 * 21.14068 * 4 2 1 7 7 O 1.20824 * 119.99930 * 271.41163 * 6 4 2 8 8 O 1.34237 * 119.99944 * 91.42105 * 6 4 2 9 9 C 1.55158 * 102.94397 * 262.77695 * 4 2 1 10 10 C 1.54916 * 101.58059 * 324.50102 * 9 4 2 11 11 N 1.47016 * 109.88185 * 121.17908 * 2 1 3 12 12 C 1.34781 * 125.65066 * 300.45045 * 11 2 1 13 13 O 1.21586 * 119.99715 * 0.02562 * 12 11 2 14 14 N 1.34776 * 120.00332 * 180.02562 * 12 11 2 15 15 C 1.39943 * 120.00242 * 184.58728 * 14 12 11 16 16 C 1.38863 * 120.06680 * 324.64967 * 15 14 12 17 17 C 1.38113 * 119.93070 * 179.77168 * 16 15 14 18 18 C 1.38285 * 120.06816 * 0.50016 * 17 16 15 19 19 C 1.50697 * 119.93060 * 179.76927 * 18 17 16 20 20 C 1.50701 * 109.47021 * 269.97639 * 19 18 17 21 21 H 1.07995 * 120.00076 * 0.02562 * 20 19 18 22 22 C 1.37876 * 119.99743 * 179.97438 * 20 19 18 23 23 N 1.31519 * 120.00167 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99929 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46951 * 90.00161 * 24 22 20 26 26 H 1.48500 * 109.46937 * 209.99752 * 24 22 20 27 27 H 1.48497 * 109.46966 * 330.00169 * 24 22 20 28 28 C 1.38281 * 120.13771 * 359.74985 * 18 17 16 29 29 C 1.38108 * 120.07158 * 359.97438 * 28 18 17 30 30 H 1.09001 * 109.47211 * 185.84472 * 1 2 3 31 31 H 1.09008 * 109.46987 * 305.84153 * 1 2 3 32 32 H 1.08999 * 109.47570 * 65.83776 * 1 2 3 33 33 H 0.96701 * 116.99671 * 179.97438 * 8 6 4 34 34 H 1.08999 * 111.00359 * 82.57427 * 9 4 2 35 35 H 1.09003 * 111.00285 * 206.42905 * 9 4 2 36 36 H 1.08992 * 110.36785 * 155.85020 * 10 9 4 37 37 H 1.09000 * 110.36035 * 278.17275 * 10 9 4 38 38 H 0.97002 * 119.99585 * 4.57984 * 14 12 11 39 39 H 1.08005 * 120.03708 * 359.97438 * 16 15 14 40 40 H 1.07997 * 119.97270 * 180.24837 * 17 16 15 41 41 H 1.08994 * 109.47543 * 29.97929 * 19 18 17 42 42 H 1.09006 * 109.46930 * 149.98133 * 19 18 17 43 43 H 0.97004 * 119.99765 * 179.97438 * 23 22 20 44 44 H 1.08007 * 119.96262 * 179.97438 * 28 18 17 45 45 H 1.08009 * 120.03906 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0547 -0.7478 -1.2438 5 1 2.9650 -0.2822 -1.6216 6 6 0.9997 -0.8008 -2.3185 7 8 0.2058 -1.7113 -2.3413 8 8 0.9421 0.1634 -3.2507 9 6 2.3517 -2.1686 -0.6955 10 6 2.8567 -1.8509 0.7342 11 7 2.0300 -0.7158 1.1828 12 6 1.7752 -0.3882 2.4652 13 8 1.0764 0.5738 2.7195 14 7 2.2949 -1.1268 3.4655 15 6 1.9535 -0.8458 4.7932 16 6 1.7464 0.4671 5.1953 17 6 1.4049 0.7409 6.5053 18 6 1.2793 -0.2899 7.4185 19 6 0.9117 0.0129 8.8482 20 6 2.1662 0.2361 9.6530 21 1 3.1329 0.1662 9.1766 22 6 2.0796 0.5306 10.9971 23 7 0.9023 0.6163 11.5771 24 14 3.6345 0.8081 11.9945 25 1 3.9968 2.2476 11.9563 26 1 3.4007 0.3937 13.4013 27 1 4.7419 0.0035 11.4189 28 6 1.4900 -1.5979 7.0224 29 6 1.8262 -1.8787 5.7126 30 1 -0.3634 -1.0223 0.1047 31 1 -0.3633 0.6018 0.8331 32 1 -0.3634 0.4206 -0.9376 33 1 0.2483 0.0862 -3.9198 34 1 1.4450 -2.7727 -0.6643 35 1 3.1269 -2.6601 -1.2835 36 1 2.7087 -2.7100 1.3884 37 1 3.9090 -1.5678 0.7105 38 1 2.9056 -1.8534 3.2651 39 1 1.8490 1.2731 4.4837 40 1 1.2397 1.7614 6.8178 41 1 0.2937 0.9100 8.8824 42 1 0.3566 -0.8270 9.2662 43 1 0.8415 0.8231 12.5229 44 1 1.3916 -2.4008 7.7381 45 1 1.9902 -2.9006 5.4037 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594152597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:00 Heat of formation + Delta-G solvation = -89.983535 kcal Electronic energy + Delta-G solvation = -27768.441993 eV Core-core repulsion = 23750.823670 eV Total energy + Delta-G solvation = -4017.618323 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.51441 -40.43399 -38.85379 -37.57813 -36.53622 -34.91623 -33.18657 -32.34910 -31.67707 -30.28361 -30.15878 -27.26688 -26.49336 -24.27742 -23.59056 -22.88287 -22.28806 -20.88755 -20.15982 -19.74999 -18.68799 -18.35007 -17.31680 -17.07985 -16.35869 -16.27484 -15.99873 -15.58275 -14.97518 -14.78748 -14.40066 -14.18027 -13.98352 -13.78170 -13.41851 -13.06584 -13.01361 -12.89132 -12.75775 -12.63130 -12.51724 -12.14059 -11.97200 -11.91378 -11.46758 -11.40017 -11.35643 -11.25247 -10.96996 -10.81414 -10.58099 -10.38039 -10.12826 -9.83843 -9.41855 -9.25241 -9.01872 -8.39566 -8.23943 -7.34036 -6.00835 -4.04752 1.61325 1.95127 2.09936 2.20039 2.59573 3.11449 3.32254 3.38341 3.42290 3.62678 3.76943 3.95380 4.37519 4.41214 4.49397 4.60519 4.67379 4.73762 4.91864 5.01441 5.08738 5.16854 5.29501 5.33021 5.45140 5.52408 5.61060 5.64988 5.76097 5.94564 5.99129 6.07506 6.10836 6.20563 6.24434 6.59576 6.71537 6.97313 7.03075 7.21307 7.26061 7.36938 7.55484 7.76070 7.77952 7.91058 7.95042 8.35807 8.45784 9.00633 9.58725 11.08699 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.034443 B = 0.002008 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.738956 B =13943.749708 C =14120.290904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.174 3.826 3 H 0.090 0.910 4 C -0.097 4.097 5 H 0.120 0.880 6 C 0.496 3.504 7 O -0.506 6.506 8 O -0.515 6.515 9 C -0.118 4.118 10 C 0.097 3.903 11 N -0.634 5.634 12 C 0.723 3.277 13 O -0.564 6.564 14 N -0.677 5.677 15 C 0.119 3.881 16 C -0.115 4.115 17 C -0.109 4.109 18 C -0.043 4.043 19 C 0.048 3.952 20 C -0.510 4.510 21 H 0.057 0.943 22 C 0.057 3.943 23 N -0.894 5.894 24 Si 0.895 3.105 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.274 1.274 28 C -0.109 4.109 29 C -0.144 4.144 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.413 0.587 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.400 0.600 39 H 0.129 0.871 40 H 0.121 0.879 41 H 0.029 0.971 42 H 0.028 0.972 43 H 0.262 0.738 44 H 0.122 0.878 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.340 -5.630 -30.382 31.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.069 3.931 3 H 0.108 0.892 4 C -0.117 4.117 5 H 0.138 0.862 6 C 0.338 3.662 7 O -0.394 6.394 8 O -0.327 6.327 9 C -0.156 4.156 10 C -0.026 4.026 11 N -0.374 5.374 12 C 0.426 3.574 13 O -0.439 6.439 14 N -0.325 5.325 15 C 0.026 3.974 16 C -0.135 4.135 17 C -0.128 4.128 18 C -0.044 4.044 19 C 0.011 3.989 20 C -0.548 4.548 21 H 0.075 0.925 22 C -0.144 4.144 23 N -0.533 5.533 24 Si 0.723 3.277 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.198 1.198 28 C -0.127 4.127 29 C -0.164 4.164 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.272 0.728 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.235 0.765 39 H 0.147 0.853 40 H 0.139 0.861 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.071 0.929 44 H 0.140 0.860 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.798 -5.083 -29.680 30.350 hybrid contribution 0.731 -0.335 -0.032 0.805 sum 4.529 -5.419 -29.711 30.539 Atomic orbital electron populations 1.22343 0.94096 1.03644 1.02987 1.21087 0.95103 0.95555 0.81334 0.89166 1.22135 0.97546 1.00058 0.91939 0.86178 1.22803 0.83962 0.78676 0.80786 1.90750 1.40268 1.35064 1.73290 1.84547 1.57420 1.50283 1.40429 1.22849 1.03697 0.94185 0.94893 1.22360 0.95335 0.89597 0.95331 1.47568 1.54330 1.31872 1.03614 1.15334 0.80240 0.82868 0.78947 1.90947 1.42398 1.28839 1.81736 1.42433 1.49361 1.36546 1.04132 1.17293 1.04608 0.93865 0.81589 1.21139 1.01146 0.95019 0.96232 1.21015 1.00194 0.99559 0.91991 1.20712 0.93603 0.92156 0.97884 1.18350 0.97108 0.97816 0.85652 1.21069 0.92349 1.47916 0.93459 0.92461 1.25025 0.96123 0.95445 0.97854 1.69964 1.22954 1.48919 1.11500 0.86539 0.83391 0.78517 0.79263 1.20616 1.21216 1.19841 1.20858 1.00391 0.97101 0.94375 1.20711 1.04806 0.96883 0.94014 0.91575 0.89737 0.92286 0.72831 0.88463 0.88762 0.90011 0.90599 0.76472 0.85285 0.86129 0.95303 0.95333 0.92881 0.86032 0.86944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 8.04 37.16 0.30 -1.47 16 2 C 0.17 1.50 3.43 -66.96 -0.23 1.27 16 3 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.10 -0.56 3.38 -89.94 -0.30 -0.87 16 5 H 0.12 0.44 8.14 -51.93 -0.42 0.01 16 6 C 0.50 3.46 5.28 36.00 0.19 3.65 16 7 O -0.51 -5.00 15.98 -18.75 -0.30 -5.30 16 8 O -0.51 -2.54 13.42 -39.27 -0.53 -3.07 16 9 C -0.12 -0.60 6.40 -24.58 -0.16 -0.75 16 10 C 0.10 0.55 6.54 -2.53 -0.02 0.53 16 11 N -0.63 -6.15 3.08 -168.70 -0.52 -6.67 16 12 C 0.72 9.96 8.11 -86.91 -0.71 9.25 16 13 O -0.56 -9.93 12.79 5.29 0.07 -9.86 16 14 N -0.68 -8.78 5.29 -14.22 -0.08 -8.86 16 15 C 0.12 1.99 6.29 -83.69 -0.53 1.46 16 16 C -0.12 -2.18 8.69 -39.40 -0.34 -2.52 16 17 C -0.11 -2.26 9.69 -39.61 -0.38 -2.65 16 18 C -0.04 -0.95 5.07 -104.59 -0.53 -1.48 16 19 C 0.05 1.24 5.10 -29.04 -0.15 1.09 16 20 C -0.51 -14.35 9.09 -34.44 -0.31 -14.67 16 21 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 22 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 23 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 24 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 28 C -0.11 -2.11 9.69 -39.61 -0.38 -2.50 16 29 C -0.14 -2.37 9.97 -39.40 -0.39 -2.76 16 30 H 0.07 0.75 7.91 -51.93 -0.41 0.34 16 31 H 0.08 1.08 6.94 -51.92 -0.36 0.72 16 32 H 0.06 0.53 6.74 -51.93 -0.35 0.18 16 33 H 0.41 0.46 9.10 45.56 0.41 0.87 16 34 H 0.10 0.67 7.22 -51.93 -0.38 0.29 16 35 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.08 0.40 7.37 -51.93 -0.38 0.01 16 37 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.40 3.75 7.36 -40.82 -0.30 3.45 16 39 H 0.13 2.44 6.25 -52.48 -0.33 2.12 16 40 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 41 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 42 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 44 H 0.12 2.26 8.06 -52.48 -0.42 1.84 16 45 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 372.80 15.07 5.62 5.62 Total: -1.00 -35.68 372.80 -9.50 -45.17 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.43 Total: 3.11 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -4.04 Total: -10.88 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.14 Total: -41.41 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.76 Total: -18.23 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.68 -9.50 -45.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594152597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.812 kcal (2) G-P(sol) polarization free energy of solvation -35.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds