Wall clock time and date at job start Tue Mar 31 2020 17:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.87267 * 2 1 4 4 C 1.54323 * 109.87761 * 238.98399 * 2 1 3 5 5 H 1.09000 * 110.87293 * 144.34312 * 4 2 1 6 6 C 1.50697 * 110.72071 * 21.14068 * 4 2 1 7 7 O 1.20824 * 119.99930 * 271.41163 * 6 4 2 8 8 O 1.34237 * 119.99944 * 91.42105 * 6 4 2 9 9 C 1.55158 * 102.94397 * 262.77695 * 4 2 1 10 10 C 1.54916 * 101.58059 * 324.50102 * 9 4 2 11 11 N 1.47016 * 109.88185 * 121.17908 * 2 1 3 12 12 C 1.34781 * 125.65066 * 300.45045 * 11 2 1 13 13 O 1.21586 * 119.99715 * 0.02562 * 12 11 2 14 14 N 1.34776 * 120.00332 * 180.02562 * 12 11 2 15 15 C 1.39943 * 120.00242 * 184.58728 * 14 12 11 16 16 C 1.38863 * 120.06680 * 324.64967 * 15 14 12 17 17 C 1.38113 * 119.93070 * 179.77168 * 16 15 14 18 18 C 1.38285 * 120.06816 * 0.50016 * 17 16 15 19 19 C 1.50697 * 119.93060 * 179.76927 * 18 17 16 20 20 C 1.50701 * 109.47021 * 269.97639 * 19 18 17 21 21 H 1.07995 * 120.00076 * 0.02562 * 20 19 18 22 22 C 1.37876 * 119.99743 * 179.97438 * 20 19 18 23 23 N 1.31519 * 120.00167 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99929 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46951 * 90.00161 * 24 22 20 26 26 H 1.48500 * 109.46937 * 209.99752 * 24 22 20 27 27 H 1.48497 * 109.46966 * 330.00169 * 24 22 20 28 28 C 1.38281 * 120.13771 * 359.74985 * 18 17 16 29 29 C 1.38108 * 120.07158 * 359.97438 * 28 18 17 30 30 H 1.09001 * 109.47211 * 185.84472 * 1 2 3 31 31 H 1.09008 * 109.46987 * 305.84153 * 1 2 3 32 32 H 1.08999 * 109.47570 * 65.83776 * 1 2 3 33 33 H 0.96701 * 116.99671 * 179.97438 * 8 6 4 34 34 H 1.08999 * 111.00359 * 82.57427 * 9 4 2 35 35 H 1.09003 * 111.00285 * 206.42905 * 9 4 2 36 36 H 1.08992 * 110.36785 * 155.85020 * 10 9 4 37 37 H 1.09000 * 110.36035 * 278.17275 * 10 9 4 38 38 H 0.97002 * 119.99585 * 4.57984 * 14 12 11 39 39 H 1.08005 * 120.03708 * 359.97438 * 16 15 14 40 40 H 1.07997 * 119.97270 * 180.24837 * 17 16 15 41 41 H 1.08994 * 109.47543 * 29.97929 * 19 18 17 42 42 H 1.09006 * 109.46930 * 149.98133 * 19 18 17 43 43 H 0.97004 * 119.99765 * 179.97438 * 23 22 20 44 44 H 1.08007 * 119.96262 * 179.97438 * 28 18 17 45 45 H 1.08009 * 120.03906 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0547 -0.7478 -1.2438 5 1 2.9650 -0.2822 -1.6216 6 6 0.9997 -0.8008 -2.3185 7 8 0.2058 -1.7113 -2.3413 8 8 0.9421 0.1634 -3.2507 9 6 2.3517 -2.1686 -0.6955 10 6 2.8567 -1.8509 0.7342 11 7 2.0300 -0.7158 1.1828 12 6 1.7752 -0.3882 2.4652 13 8 1.0764 0.5738 2.7195 14 7 2.2949 -1.1268 3.4655 15 6 1.9535 -0.8458 4.7932 16 6 1.7464 0.4671 5.1953 17 6 1.4049 0.7409 6.5053 18 6 1.2793 -0.2899 7.4185 19 6 0.9117 0.0129 8.8482 20 6 2.1662 0.2361 9.6530 21 1 3.1329 0.1662 9.1766 22 6 2.0796 0.5306 10.9971 23 7 0.9023 0.6163 11.5771 24 14 3.6345 0.8081 11.9945 25 1 3.9968 2.2476 11.9563 26 1 3.4007 0.3937 13.4013 27 1 4.7419 0.0035 11.4189 28 6 1.4900 -1.5979 7.0224 29 6 1.8262 -1.8787 5.7126 30 1 -0.3634 -1.0223 0.1047 31 1 -0.3633 0.6018 0.8331 32 1 -0.3634 0.4206 -0.9376 33 1 0.2483 0.0862 -3.9198 34 1 1.4450 -2.7727 -0.6643 35 1 3.1269 -2.6601 -1.2835 36 1 2.7087 -2.7100 1.3884 37 1 3.9090 -1.5678 0.7105 38 1 2.9056 -1.8534 3.2651 39 1 1.8490 1.2731 4.4837 40 1 1.2397 1.7614 6.8178 41 1 0.2937 0.9100 8.8824 42 1 0.3566 -0.8270 9.2662 43 1 0.8415 0.8231 12.5229 44 1 1.3916 -2.4008 7.7381 45 1 1.9902 -2.9006 5.4037 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594152597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:59 Heat of formation + Delta-G solvation = -113.502504 kcal Electronic energy + Delta-G solvation = -27769.461852 eV Core-core repulsion = 23750.823670 eV Total energy + Delta-G solvation = -4018.638182 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.21957 -41.34201 -39.99119 -38.58045 -37.06628 -36.28435 -35.03260 -33.40838 -32.31527 -31.82181 -31.71768 -28.48569 -27.69030 -25.53435 -24.45988 -24.05238 -23.71379 -22.12445 -21.09476 -20.70562 -19.47290 -18.99331 -18.49650 -18.26281 -17.78111 -17.01028 -16.99355 -16.73017 -16.46643 -15.91188 -15.77807 -15.47927 -14.80144 -14.60081 -14.51066 -14.38940 -14.22717 -14.08438 -13.75943 -13.63035 -13.50876 -13.25924 -13.23050 -13.11016 -12.70102 -12.61378 -12.49477 -12.42573 -12.09738 -12.00946 -11.87512 -11.67109 -11.55444 -11.52071 -11.21638 -10.85420 -10.58943 -9.84166 -9.73807 -8.82745 -8.16607 -6.31436 0.49686 0.60065 1.04985 1.36357 1.40869 1.42339 1.53735 1.98346 2.13909 2.41532 2.83961 3.03234 3.12342 3.28564 3.35266 3.83021 4.05241 4.07944 4.18431 4.19164 4.24794 4.27901 4.40682 4.44619 4.57121 4.62874 4.63542 4.68524 4.73928 4.84527 4.91075 5.08854 5.12363 5.15599 5.23273 5.34671 5.36867 5.45557 5.51583 5.60589 5.63657 5.77403 5.92669 6.10606 6.14689 6.27997 6.81289 6.81477 6.96911 7.36812 7.42194 8.91257 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.034443 B = 0.002008 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.738956 B =13943.749708 C =14120.290904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.168 3.832 3 H 0.091 0.909 4 C -0.089 4.089 5 H 0.152 0.848 6 C 0.499 3.501 7 O -0.540 6.540 8 O -0.511 6.511 9 C -0.112 4.112 10 C 0.090 3.910 11 N -0.628 5.628 12 C 0.717 3.283 13 O -0.609 6.609 14 N -0.664 5.664 15 C 0.136 3.864 16 C -0.122 4.122 17 C -0.121 4.121 18 C -0.076 4.076 19 C 0.057 3.943 20 C -0.525 4.525 21 H 0.056 0.944 22 C 0.001 3.999 23 N -0.932 5.932 24 Si 0.968 3.032 25 H -0.274 1.274 26 H -0.279 1.279 27 H -0.263 1.263 28 C -0.113 4.113 29 C -0.127 4.127 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.429 0.571 34 H 0.076 0.924 35 H 0.126 0.874 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.422 0.578 39 H 0.127 0.873 40 H 0.108 0.892 41 H -0.002 1.002 42 H 0.007 0.993 43 H 0.265 0.735 44 H 0.127 0.873 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.296 -7.335 -32.934 34.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.109 0.891 4 C -0.108 4.108 5 H 0.170 0.830 6 C 0.342 3.658 7 O -0.430 6.430 8 O -0.325 6.325 9 C -0.150 4.150 10 C -0.031 4.031 11 N -0.366 5.366 12 C 0.420 3.580 13 O -0.488 6.488 14 N -0.314 5.314 15 C 0.042 3.958 16 C -0.142 4.142 17 C -0.140 4.140 18 C -0.076 4.076 19 C 0.020 3.980 20 C -0.563 4.563 21 H 0.075 0.925 22 C -0.197 4.197 23 N -0.572 5.572 24 Si 0.792 3.208 25 H -0.199 1.199 26 H -0.205 1.205 27 H -0.187 1.187 28 C -0.132 4.132 29 C -0.147 4.147 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.291 0.709 34 H 0.095 0.905 35 H 0.145 0.855 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.261 0.739 39 H 0.144 0.856 40 H 0.126 0.874 41 H 0.016 0.984 42 H 0.025 0.975 43 H 0.074 0.926 44 H 0.145 0.855 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 6.789 -6.822 -32.314 33.717 hybrid contribution -0.254 0.200 0.549 0.637 sum 6.535 -6.621 -31.765 33.099 Atomic orbital electron populations 1.22230 0.95792 1.02084 1.02187 1.21190 0.93787 0.96265 0.82375 0.89144 1.22176 0.98100 1.00436 0.90122 0.83023 1.23016 0.83530 0.78253 0.81008 1.90749 1.41567 1.36468 1.74232 1.84517 1.58078 1.49357 1.40528 1.22860 1.03818 0.93487 0.94812 1.22741 0.96055 0.88525 0.95793 1.47557 1.53944 1.32779 1.02339 1.15514 0.79959 0.82378 0.80166 1.90929 1.44311 1.30850 1.82758 1.42209 1.49618 1.37066 1.02475 1.17338 1.02202 0.92955 0.83302 1.21125 1.01586 0.96416 0.95072 1.20922 1.01299 0.98832 0.92944 1.20403 0.97154 0.94112 0.95960 1.18090 0.95946 0.95439 0.88529 1.21387 0.92907 1.47882 0.94156 0.92533 1.25976 0.99657 0.94969 0.99100 1.70096 1.25347 1.49755 1.11973 0.85408 0.79187 0.78671 0.77561 1.19946 1.20484 1.18688 1.20958 1.00302 0.95807 0.96091 1.20998 1.02554 0.98907 0.92250 0.92910 0.92854 0.91243 0.70944 0.90502 0.85531 0.88711 0.87739 0.73905 0.85565 0.87362 0.98391 0.97507 0.92628 0.85515 0.82358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 8.04 71.98 0.58 -2.80 16 2 C 0.17 2.61 3.43 45.34 0.16 2.76 16 3 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 4 C -0.09 -0.74 3.38 -10.35 -0.04 -0.78 16 5 H 0.15 0.38 8.14 -2.39 -0.02 0.36 16 6 C 0.50 5.86 5.28 71.24 0.38 6.24 16 7 O -0.54 -9.98 15.98 21.97 0.35 -9.62 16 8 O -0.51 -3.81 13.42 -51.48 -0.69 -4.50 16 9 C -0.11 -0.71 6.40 31.99 0.20 -0.51 16 10 C 0.09 0.65 6.54 86.86 0.57 1.22 16 11 N -0.63 -10.69 3.08 -805.90 -2.48 -13.18 16 12 C 0.72 18.65 8.11 179.05 1.45 20.10 16 13 O -0.61 -21.60 12.79 -3.99 -0.05 -21.65 16 14 N -0.66 -15.39 5.29 -317.18 -1.68 -17.06 16 15 C 0.14 4.31 6.29 38.15 0.24 4.55 16 16 C -0.12 -4.63 8.69 22.39 0.19 -4.44 16 17 C -0.12 -5.27 9.69 22.25 0.22 -5.05 16 18 C -0.08 -3.49 5.07 -19.84 -0.10 -3.59 16 19 C 0.06 3.15 5.10 29.10 0.15 3.30 16 20 C -0.53 -30.57 9.09 25.60 0.23 -30.34 16 21 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 22 C 0.00 0.05 5.46 84.65 0.46 0.51 16 23 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 24 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 25 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 26 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 27 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 28 C -0.11 -4.35 9.69 22.25 0.22 -4.14 16 29 C -0.13 -3.85 9.97 22.39 0.22 -3.62 16 30 H 0.05 1.20 7.91 -2.39 -0.02 1.18 16 31 H 0.05 1.43 6.94 -2.38 -0.02 1.41 16 32 H 0.07 1.22 6.74 -2.39 -0.02 1.20 16 33 H 0.43 0.07 9.10 -74.06 -0.67 -0.61 16 34 H 0.08 0.87 7.22 -2.39 -0.02 0.85 16 35 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16 36 H 0.09 0.48 7.37 -2.39 -0.02 0.46 16 37 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.42 6.09 7.36 -92.71 -0.68 5.41 16 39 H 0.13 4.89 6.25 -2.91 -0.02 4.87 16 40 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 41 H 0.00 -0.13 8.08 -2.39 -0.02 -0.15 16 42 H 0.01 0.39 8.08 -2.38 -0.02 0.37 16 43 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 44 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 45 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -82.17 372.80 2.57 -79.59 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -0.32 Total: 13.07 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 5.13 Total: -16.59 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -3.87 Total: -87.15 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -0.39 Total: -35.77 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -82.17 2.57 -79.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594152597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.909 kcal (2) G-P(sol) polarization free energy of solvation -82.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds