Wall clock time and date at job start Tue Mar 31 2020 17:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 110.41805 * 2 1 4 4 C 1.54914 * 110.36690 * 237.70197 * 2 1 3 5 5 H 1.09001 * 111.00225 * 322.22628 * 4 2 1 6 6 C 1.50699 * 111.00194 * 86.04340 * 4 2 1 7 7 O 1.20823 * 120.00288 * 359.97438 * 6 4 2 8 8 O 1.34233 * 119.99658 * 180.02562 * 6 4 2 9 9 C 1.55399 * 101.66791 * 204.23716 * 4 2 1 10 10 C 1.54328 * 102.82771 * 35.33944 * 9 4 2 11 11 N 1.47020 * 107.40180 * 337.97351 * 10 9 4 12 12 C 1.34780 * 125.65417 * 178.89859 * 11 10 9 13 13 O 1.21577 * 120.00362 * 179.97438 * 12 11 10 14 14 N 1.34784 * 119.99362 * 359.97438 * 12 11 10 15 15 C 1.39941 * 119.99467 * 174.68465 * 14 12 11 16 16 C 1.38860 * 120.07318 * 326.56316 * 15 14 12 17 17 C 1.38113 * 119.93132 * 179.77513 * 16 15 14 18 18 C 1.38288 * 120.06639 * 0.50465 * 17 16 15 19 19 C 1.50702 * 119.92602 * 179.77234 * 18 17 16 20 20 C 1.50697 * 109.46874 * 269.97276 * 19 18 17 21 21 H 1.08006 * 120.00238 * 0.02562 * 20 19 18 22 22 C 1.37874 * 119.99999 * 179.97438 * 20 19 18 23 23 N 1.31523 * 120.00342 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00341 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47033 * 89.99513 * 24 22 20 26 26 H 1.48490 * 109.47767 * 209.99847 * 24 22 20 27 27 H 1.48505 * 109.46921 * 330.00034 * 24 22 20 28 28 C 1.38273 * 120.14250 * 359.74498 * 18 17 16 29 29 C 1.38114 * 120.06915 * 0.02562 * 28 18 17 30 30 H 1.09004 * 109.47105 * 299.16036 * 1 2 3 31 31 H 1.09001 * 109.47089 * 59.15850 * 1 2 3 32 32 H 1.09000 * 109.47318 * 179.16111 * 1 2 3 33 33 H 0.96700 * 116.99680 * 179.97438 * 8 6 4 34 34 H 1.08999 * 110.69512 * 277.05428 * 9 4 2 35 35 H 1.09003 * 110.85670 * 153.69673 * 9 4 2 36 36 H 1.09001 * 109.88414 * 218.48332 * 10 9 4 37 37 H 1.08999 * 109.88285 * 97.47060 * 10 9 4 38 38 H 0.97004 * 119.99934 * 354.67918 * 14 12 11 39 39 H 1.07996 * 120.03683 * 359.97438 * 16 15 14 40 40 H 1.07994 * 119.96884 * 180.25064 * 17 16 15 41 41 H 1.08991 * 109.47469 * 29.97620 * 19 18 17 42 42 H 1.09004 * 109.46746 * 149.98039 * 19 18 17 43 43 H 0.96993 * 120.00125 * 180.02562 * 23 22 20 44 44 H 1.08001 * 119.96765 * 179.97438 * 28 18 17 45 45 H 1.08002 * 120.03432 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0691 -0.7760 -1.2276 5 1 1.4510 -1.6481 -1.4407 6 6 2.1661 0.1218 -2.4341 7 8 1.8403 1.2823 -2.3513 8 8 2.6134 -0.3682 -3.6010 9 6 3.4794 -1.2035 -0.7346 10 6 3.2493 -1.4769 0.7667 11 7 2.0431 -0.7384 1.1683 12 6 1.4971 -0.7362 2.4006 13 8 0.4940 -0.0852 2.6199 14 7 2.0633 -1.4557 3.3897 15 6 1.5636 -1.3667 4.6938 16 6 1.0380 -0.1679 5.1573 17 6 0.5414 -0.0846 6.4433 18 6 0.5766 -1.1907 7.2726 19 6 0.0385 -1.0948 8.6770 20 6 1.1438 -0.6735 9.6108 21 1 2.1365 -0.4928 9.2257 22 6 0.8875 -0.5178 10.9565 23 7 1.8519 -0.1496 11.7714 24 14 -0.8297 -0.8296 11.6225 25 1 -0.9561 -2.2556 12.0170 26 1 -1.0658 0.0344 12.8069 27 1 -1.8323 -0.5156 10.5730 28 6 1.1040 -2.3845 6.8158 29 6 1.5979 -2.4755 5.5293 30 1 -0.3633 0.5008 0.8974 31 1 -0.3633 0.5269 -0.8824 32 1 -0.3634 -1.0275 -0.0150 33 1 2.6576 0.2457 -4.3468 34 1 4.1974 -0.3952 -0.8737 35 1 3.8113 -2.1077 -1.2447 36 1 4.1064 -1.1280 1.3428 37 1 3.1022 -2.5444 0.9308 38 1 2.8171 -2.0353 3.1975 39 1 1.0147 0.6976 4.5118 40 1 0.1288 0.8463 6.8031 41 1 -0.7645 -0.3586 8.7090 42 1 -0.3470 -2.0667 8.9855 43 1 1.6717 -0.0403 12.7181 44 1 1.1305 -3.2464 7.4661 45 1 2.0101 -3.4081 5.1732 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594152602.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:08 Heat of formation + Delta-G solvation = -86.495919 kcal Electronic energy + Delta-G solvation = -27699.082314 eV Core-core repulsion = 23681.615225 eV Total energy + Delta-G solvation = -4017.467089 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.40030 -40.47299 -38.91423 -37.58566 -36.61373 -35.00352 -33.14360 -32.33155 -31.76943 -30.53194 -30.30845 -27.42239 -26.71204 -24.13510 -23.36787 -22.63372 -22.35637 -21.13605 -20.23667 -19.69901 -18.81909 -18.14560 -17.53620 -17.14964 -16.73675 -16.11964 -15.82043 -15.31425 -14.98513 -14.87040 -14.41963 -14.24778 -14.10398 -13.97610 -13.70699 -13.19325 -13.18636 -12.84443 -12.70766 -12.50305 -12.41115 -12.21066 -12.08937 -11.96755 -11.61480 -11.59761 -11.49735 -11.33715 -11.01902 -10.79973 -10.41094 -10.26401 -10.06187 -9.87160 -9.51296 -9.29317 -8.99413 -8.55527 -8.30362 -7.36095 -6.04725 -4.03433 1.62293 1.88849 2.03189 2.09787 2.64138 3.09907 3.31071 3.39025 3.42800 3.54513 3.80040 3.91517 4.26702 4.44365 4.47845 4.54804 4.62265 4.78248 4.95088 5.05455 5.11658 5.22942 5.27060 5.36286 5.39857 5.44773 5.54232 5.76722 5.78414 5.88491 5.95176 5.97832 6.10997 6.15287 6.30309 6.56107 6.62286 6.86904 6.98733 6.99421 7.08300 7.12803 7.32870 7.62660 7.64766 7.75148 7.76174 8.44605 8.52861 9.00843 9.55871 11.08185 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.034867 B = 0.002023 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.857395 B =13835.178507 C =14122.328135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.173 3.827 3 H 0.090 0.910 4 C -0.099 4.099 5 H 0.125 0.875 6 C 0.493 3.507 7 O -0.504 6.504 8 O -0.514 6.514 9 C -0.114 4.114 10 C 0.095 3.905 11 N -0.636 5.636 12 C 0.724 3.276 13 O -0.561 6.561 14 N -0.678 5.678 15 C 0.128 3.872 16 C -0.116 4.116 17 C -0.103 4.103 18 C -0.041 4.041 19 C 0.014 3.986 20 C -0.511 4.511 21 H 0.074 0.926 22 C 0.068 3.932 23 N -0.901 5.901 24 Si 0.878 3.122 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.264 1.264 28 C -0.105 4.105 29 C -0.145 4.145 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.413 0.587 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.401 0.599 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.028 0.972 42 H 0.023 0.977 43 H 0.264 0.736 44 H 0.123 0.877 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.964 -5.308 -31.484 32.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.069 3.931 3 H 0.108 0.892 4 C -0.119 4.119 5 H 0.143 0.857 6 C 0.334 3.666 7 O -0.391 6.391 8 O -0.326 6.326 9 C -0.152 4.152 10 C -0.028 4.028 11 N -0.376 5.376 12 C 0.427 3.573 13 O -0.436 6.436 14 N -0.326 5.326 15 C 0.035 3.965 16 C -0.136 4.136 17 C -0.122 4.122 18 C -0.041 4.041 19 C -0.023 4.023 20 C -0.549 4.549 21 H 0.092 0.908 22 C -0.134 4.134 23 N -0.539 5.539 24 Si 0.705 3.295 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.189 1.189 28 C -0.123 4.123 29 C -0.165 4.165 30 H 0.116 0.884 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.272 0.728 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.236 0.764 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.046 0.954 42 H 0.041 0.959 43 H 0.073 0.927 44 H 0.141 0.859 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.133 -4.706 -30.726 31.242 hybrid contribution -0.186 -0.129 -0.219 0.315 sum 2.947 -4.836 -30.945 31.459 Atomic orbital electron populations 1.22221 0.92826 1.02812 1.04580 1.21503 0.95957 0.94963 0.80663 0.89172 1.22299 1.00428 0.98969 0.90253 0.85725 1.22885 0.72832 0.87035 0.83875 1.90776 1.44936 1.18779 1.84636 1.84514 1.78619 1.48187 1.21304 1.22636 0.94512 1.03560 0.94492 1.22057 0.88369 0.97098 0.95268 1.47578 1.29263 1.52119 1.08651 1.15325 0.82532 0.80647 0.78812 1.90911 1.25302 1.46671 1.80744 1.42503 1.35954 1.47664 1.06430 1.17295 1.02154 0.94486 0.82596 1.21002 1.00466 0.96269 0.95866 1.20961 0.99928 0.98761 0.92563 1.20284 0.95076 0.92333 0.96434 1.18802 0.97114 0.97321 0.89048 1.20947 0.96517 1.46124 0.91302 0.90810 1.25008 0.96876 0.94604 0.96869 1.69903 1.32259 1.47654 1.04128 0.86803 0.85488 0.78443 0.78778 1.20211 1.21306 1.18876 1.20827 0.98824 0.98320 0.94346 1.20681 1.04544 0.96178 0.95120 0.88352 0.91880 0.92559 0.72771 0.89712 0.88265 0.90609 0.90818 0.76440 0.85598 0.86025 0.95386 0.95860 0.92658 0.85936 0.86768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 8.71 37.15 0.32 -1.43 16 2 C 0.17 1.60 2.89 -66.42 -0.19 1.41 16 3 H 0.09 0.97 7.40 -51.93 -0.38 0.58 16 4 C -0.10 -0.59 2.96 -89.49 -0.26 -0.86 16 5 H 0.12 0.59 8.06 -51.93 -0.42 0.17 16 6 C 0.49 3.33 7.65 36.01 0.28 3.61 16 7 O -0.50 -5.14 16.48 -18.75 -0.31 -5.45 16 8 O -0.51 -2.16 13.42 -39.26 -0.53 -2.68 16 9 C -0.11 -0.46 6.43 -24.76 -0.16 -0.62 16 10 C 0.10 0.52 6.16 -3.06 -0.02 0.51 16 11 N -0.64 -6.16 3.24 -168.72 -0.55 -6.71 16 12 C 0.72 9.79 8.01 -86.91 -0.70 9.09 16 13 O -0.56 -9.64 11.69 5.30 0.06 -9.57 16 14 N -0.68 -8.60 5.30 -14.22 -0.08 -8.67 16 15 C 0.13 2.08 6.28 -83.69 -0.53 1.56 16 16 C -0.12 -2.14 8.65 -39.40 -0.34 -2.48 16 17 C -0.10 -2.09 9.69 -39.61 -0.38 -2.48 16 18 C -0.04 -0.87 5.07 -104.59 -0.53 -1.40 16 19 C 0.01 0.35 4.17 -29.04 -0.12 0.22 16 20 C -0.51 -14.56 9.65 -34.44 -0.33 -14.89 16 21 H 0.07 2.30 7.98 -52.48 -0.42 1.88 16 22 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 23 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 24 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 28 C -0.10 -1.96 9.69 -39.61 -0.38 -2.35 16 29 C -0.14 -2.31 9.96 -39.39 -0.39 -2.70 16 30 H 0.10 1.34 5.89 -51.93 -0.31 1.03 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.41 0.17 9.10 45.56 0.41 0.59 16 34 H 0.08 0.34 8.03 -51.93 -0.42 -0.08 16 35 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.30 8.12 -51.93 -0.42 -0.12 16 38 H 0.40 3.66 7.80 -40.82 -0.32 3.34 16 39 H 0.13 2.34 6.43 -52.49 -0.34 2.00 16 40 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 41 H 0.03 0.68 7.14 -51.93 -0.37 0.31 16 42 H 0.02 0.54 7.51 -51.93 -0.39 0.15 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 45 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 372.27 15.07 5.61 5.61 Total: -1.00 -36.27 372.27 -9.02 -45.28 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.49 Total: 3.15 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -3.84 Total: -10.93 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.15 Total: -42.29 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.77 Total: -17.71 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.27 -9.02 -45.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594152602.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.212 kcal (2) G-P(sol) polarization free energy of solvation -36.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds