Wall clock time and date at job start Tue Mar 31 2020 17:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 110.41805 * 2 1 4 4 C 1.54914 * 110.36690 * 237.70197 * 2 1 3 5 5 H 1.09001 * 111.00225 * 322.22628 * 4 2 1 6 6 C 1.50699 * 111.00194 * 86.04340 * 4 2 1 7 7 O 1.20823 * 120.00288 * 359.97438 * 6 4 2 8 8 O 1.34233 * 119.99658 * 180.02562 * 6 4 2 9 9 C 1.55399 * 101.66791 * 204.23716 * 4 2 1 10 10 C 1.54328 * 102.82771 * 35.33944 * 9 4 2 11 11 N 1.47020 * 107.40180 * 337.97351 * 10 9 4 12 12 C 1.34780 * 125.65417 * 178.89859 * 11 10 9 13 13 O 1.21577 * 120.00362 * 179.97438 * 12 11 10 14 14 N 1.34784 * 119.99362 * 359.97438 * 12 11 10 15 15 C 1.39941 * 119.99467 * 174.68465 * 14 12 11 16 16 C 1.38860 * 120.07318 * 326.56316 * 15 14 12 17 17 C 1.38113 * 119.93132 * 179.77513 * 16 15 14 18 18 C 1.38288 * 120.06639 * 0.50465 * 17 16 15 19 19 C 1.50702 * 119.92602 * 179.77234 * 18 17 16 20 20 C 1.50697 * 109.46874 * 269.97276 * 19 18 17 21 21 H 1.08006 * 120.00238 * 0.02562 * 20 19 18 22 22 C 1.37874 * 119.99999 * 179.97438 * 20 19 18 23 23 N 1.31523 * 120.00342 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00341 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47033 * 89.99513 * 24 22 20 26 26 H 1.48490 * 109.47767 * 209.99847 * 24 22 20 27 27 H 1.48505 * 109.46921 * 330.00034 * 24 22 20 28 28 C 1.38273 * 120.14250 * 359.74498 * 18 17 16 29 29 C 1.38114 * 120.06915 * 0.02562 * 28 18 17 30 30 H 1.09004 * 109.47105 * 299.16036 * 1 2 3 31 31 H 1.09001 * 109.47089 * 59.15850 * 1 2 3 32 32 H 1.09000 * 109.47318 * 179.16111 * 1 2 3 33 33 H 0.96700 * 116.99680 * 179.97438 * 8 6 4 34 34 H 1.08999 * 110.69512 * 277.05428 * 9 4 2 35 35 H 1.09003 * 110.85670 * 153.69673 * 9 4 2 36 36 H 1.09001 * 109.88414 * 218.48332 * 10 9 4 37 37 H 1.08999 * 109.88285 * 97.47060 * 10 9 4 38 38 H 0.97004 * 119.99934 * 354.67918 * 14 12 11 39 39 H 1.07996 * 120.03683 * 359.97438 * 16 15 14 40 40 H 1.07994 * 119.96884 * 180.25064 * 17 16 15 41 41 H 1.08991 * 109.47469 * 29.97620 * 19 18 17 42 42 H 1.09004 * 109.46746 * 149.98039 * 19 18 17 43 43 H 0.96993 * 120.00125 * 180.02562 * 23 22 20 44 44 H 1.08001 * 119.96765 * 179.97438 * 28 18 17 45 45 H 1.08002 * 120.03432 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0691 -0.7760 -1.2276 5 1 1.4510 -1.6481 -1.4407 6 6 2.1661 0.1218 -2.4341 7 8 1.8403 1.2823 -2.3513 8 8 2.6134 -0.3682 -3.6010 9 6 3.4794 -1.2035 -0.7346 10 6 3.2493 -1.4769 0.7667 11 7 2.0431 -0.7384 1.1683 12 6 1.4971 -0.7362 2.4006 13 8 0.4940 -0.0852 2.6199 14 7 2.0633 -1.4557 3.3897 15 6 1.5636 -1.3667 4.6938 16 6 1.0380 -0.1679 5.1573 17 6 0.5414 -0.0846 6.4433 18 6 0.5766 -1.1907 7.2726 19 6 0.0385 -1.0948 8.6770 20 6 1.1438 -0.6735 9.6108 21 1 2.1365 -0.4928 9.2257 22 6 0.8875 -0.5178 10.9565 23 7 1.8519 -0.1496 11.7714 24 14 -0.8297 -0.8296 11.6225 25 1 -0.9561 -2.2556 12.0170 26 1 -1.0658 0.0344 12.8069 27 1 -1.8323 -0.5156 10.5730 28 6 1.1040 -2.3845 6.8158 29 6 1.5979 -2.4755 5.5293 30 1 -0.3633 0.5008 0.8974 31 1 -0.3633 0.5269 -0.8824 32 1 -0.3634 -1.0275 -0.0150 33 1 2.6576 0.2457 -4.3468 34 1 4.1974 -0.3952 -0.8737 35 1 3.8113 -2.1077 -1.2447 36 1 4.1064 -1.1280 1.3428 37 1 3.1022 -2.5444 0.9308 38 1 2.8171 -2.0353 3.1975 39 1 1.0147 0.6976 4.5118 40 1 0.1288 0.8463 6.8031 41 1 -0.7645 -0.3586 8.7090 42 1 -0.3470 -2.0667 8.9855 43 1 1.6717 -0.0403 12.7181 44 1 1.1305 -3.2464 7.4661 45 1 2.0101 -3.4081 5.1732 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594152602.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:07 Heat of formation + Delta-G solvation = -111.456463 kcal Electronic energy + Delta-G solvation = -27700.164684 eV Core-core repulsion = 23681.615225 eV Total energy + Delta-G solvation = -4018.549460 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.14164 -41.30590 -40.03445 -38.55056 -37.10900 -36.31753 -34.98065 -33.43896 -32.46723 -32.05268 -31.75117 -28.78304 -27.67367 -25.27622 -24.22883 -23.88917 -23.62198 -22.09678 -21.38677 -20.72435 -19.50097 -18.94503 -18.81277 -18.29178 -18.16632 -16.86850 -16.68106 -16.51240 -16.15876 -15.96053 -15.88245 -15.25706 -14.96918 -14.90661 -14.82078 -14.39946 -14.31138 -14.23058 -13.95752 -13.73847 -13.45551 -13.34059 -13.17208 -13.02028 -12.67303 -12.57237 -12.51610 -12.20375 -12.09006 -11.94310 -11.85197 -11.73458 -11.58868 -11.55342 -11.15102 -10.83344 -10.76408 -9.80703 -9.74293 -8.76865 -8.27861 -6.32382 0.48491 0.59113 1.12612 1.27181 1.37322 1.39862 1.51806 1.97780 2.15175 2.37041 2.81370 3.00697 3.06214 3.19198 3.39931 3.85070 4.04741 4.11100 4.12250 4.16233 4.25181 4.33400 4.42122 4.49742 4.56298 4.63028 4.66034 4.69808 4.71356 4.90989 5.01057 5.04713 5.06165 5.09058 5.11141 5.27433 5.36974 5.43612 5.48825 5.58008 5.58570 5.66459 5.94335 6.03010 6.18640 6.31731 6.73619 6.82315 6.95354 7.30756 7.43156 8.88407 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.034867 B = 0.002023 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.857395 B =13835.178507 C =14122.328135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 H 0.070 0.930 4 C -0.092 4.092 5 H 0.145 0.855 6 C 0.500 3.500 7 O -0.547 6.547 8 O -0.504 6.504 9 C -0.103 4.103 10 C 0.085 3.915 11 N -0.630 5.630 12 C 0.717 3.283 13 O -0.604 6.604 14 N -0.665 5.665 15 C 0.142 3.858 16 C -0.127 4.127 17 C -0.119 4.119 18 C -0.077 4.077 19 C 0.021 3.979 20 C -0.516 4.516 21 H 0.029 0.971 22 C 0.006 3.994 23 N -0.949 5.949 24 Si 0.950 3.050 25 H -0.261 1.261 26 H -0.284 1.284 27 H -0.250 1.250 28 C -0.110 4.110 29 C -0.130 4.130 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.430 0.570 34 H 0.085 0.915 35 H 0.132 0.868 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.422 0.578 39 H 0.119 0.881 40 H 0.111 0.889 41 H 0.025 0.975 42 H 0.034 0.966 43 H 0.267 0.733 44 H 0.133 0.867 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.413 -8.234 -34.092 35.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.063 3.937 3 H 0.087 0.913 4 C -0.111 4.111 5 H 0.163 0.837 6 C 0.343 3.657 7 O -0.437 6.437 8 O -0.317 6.317 9 C -0.140 4.140 10 C -0.036 4.036 11 N -0.368 5.368 12 C 0.420 3.580 13 O -0.483 6.483 14 N -0.314 5.314 15 C 0.048 3.952 16 C -0.147 4.147 17 C -0.137 4.137 18 C -0.077 4.077 19 C -0.016 4.016 20 C -0.554 4.554 21 H 0.048 0.952 22 C -0.191 4.191 23 N -0.589 5.589 24 Si 0.773 3.227 25 H -0.186 1.186 26 H -0.210 1.210 27 H -0.174 1.174 28 C -0.128 4.128 29 C -0.150 4.150 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.293 0.707 34 H 0.103 0.897 35 H 0.150 0.850 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.260 0.740 39 H 0.137 0.863 40 H 0.130 0.870 41 H 0.043 0.957 42 H 0.053 0.947 43 H 0.076 0.924 44 H 0.151 0.849 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.644 -7.673 -33.425 34.488 hybrid contribution -0.192 0.815 0.378 0.919 sum 3.453 -6.858 -33.047 33.927 Atomic orbital electron populations 1.22089 0.94087 1.02636 1.02937 1.21473 0.95053 0.94822 0.82319 0.91250 1.22222 1.01970 0.98575 0.88379 0.83728 1.22969 0.71814 0.86313 0.84596 1.90778 1.47009 1.20621 1.85342 1.84468 1.77683 1.48425 1.21146 1.22697 0.92973 1.05042 0.93332 1.22447 0.86667 0.98062 0.96432 1.47552 1.30148 1.51771 1.07345 1.15521 0.82299 0.80310 0.79891 1.90905 1.27399 1.48259 1.81762 1.42283 1.36364 1.47934 1.04842 1.17359 1.00254 0.93611 0.84021 1.20986 1.01309 0.97370 0.95084 1.20937 1.00923 0.98357 0.93512 1.20161 0.97972 0.94128 0.95467 1.18644 0.95546 0.97340 0.90092 1.21168 0.96036 1.45842 0.92399 0.95227 1.25979 1.01612 0.94307 0.97152 1.70058 1.34917 1.49298 1.04652 0.85658 0.79839 0.79003 0.78195 1.18602 1.20978 1.17355 1.21023 0.98430 0.97559 0.95810 1.21002 1.02883 0.97565 0.93597 0.91912 0.91481 0.91961 0.70747 0.89654 0.84989 0.89615 0.88176 0.73950 0.86323 0.87043 0.95701 0.94749 0.92416 0.84903 0.82223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 8.71 71.98 0.63 -2.77 16 2 C 0.17 2.96 2.89 45.47 0.13 3.09 16 3 H 0.07 1.53 7.40 -2.39 -0.02 1.51 16 4 C -0.09 -0.83 2.96 -10.06 -0.03 -0.86 16 5 H 0.15 0.80 8.06 -2.39 -0.02 0.78 16 6 C 0.50 5.75 7.65 71.24 0.55 6.29 16 7 O -0.55 -10.90 16.48 21.97 0.36 -10.53 16 8 O -0.50 -2.70 13.42 -51.44 -0.69 -3.39 16 9 C -0.10 -0.40 6.43 31.87 0.21 -0.19 16 10 C 0.09 0.61 6.16 86.73 0.53 1.14 16 11 N -0.63 -11.04 3.24 -805.97 -2.61 -13.65 16 12 C 0.72 18.63 8.01 179.05 1.43 20.07 16 13 O -0.60 -21.24 11.69 -3.96 -0.05 -21.28 16 14 N -0.67 -15.27 5.30 -317.18 -1.68 -16.95 16 15 C 0.14 4.42 6.28 38.15 0.24 4.66 16 16 C -0.13 -4.79 8.65 22.39 0.19 -4.60 16 17 C -0.12 -4.99 9.69 22.25 0.22 -4.77 16 18 C -0.08 -3.34 5.07 -19.84 -0.10 -3.44 16 19 C 0.02 1.03 4.17 29.10 0.12 1.15 16 20 C -0.52 -30.47 9.65 25.60 0.25 -30.22 16 21 H 0.03 1.94 7.98 -2.91 -0.02 1.92 16 22 C 0.01 0.38 5.47 84.65 0.46 0.84 16 23 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 24 Si 0.95 44.72 27.47 68.60 1.88 46.61 16 25 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 27 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 28 C -0.11 -4.00 9.69 22.25 0.22 -3.78 16 29 C -0.13 -3.80 9.96 22.39 0.22 -3.58 16 30 H 0.06 1.82 5.89 -2.39 -0.01 1.80 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.43 -0.77 9.10 -74.06 -0.67 -1.45 16 34 H 0.08 0.37 8.03 -2.39 -0.02 0.35 16 35 H 0.13 -0.24 8.14 -2.39 -0.02 -0.26 16 36 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.10 0.27 8.12 -2.39 -0.02 0.25 16 38 H 0.42 6.04 7.80 -92.71 -0.72 5.32 16 39 H 0.12 4.62 6.43 -2.91 -0.02 4.60 16 40 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 41 H 0.02 1.21 7.14 -2.39 -0.02 1.20 16 42 H 0.03 1.59 7.51 -2.38 -0.02 1.57 16 43 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 44 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 45 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -84.25 372.27 2.36 -81.89 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -0.42 Total: 14.07 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: 5.26 Total: -16.98 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -3.99 Total: -90.39 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -0.37 Total: -35.20 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.61 kcal Total: -84.25 2.36 -81.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594152602.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.566 kcal (2) G-P(sol) polarization free energy of solvation -84.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds