Wall clock time and date at job start Tue Mar 31 2020 17:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 110.41559 * 2 1 4 4 C 1.55128 * 110.34617 * 122.44129 * 2 1 3 5 5 H 1.09008 * 111.21986 * 37.94314 * 4 2 1 6 6 C 1.50701 * 110.90923 * 274.04200 * 4 2 1 7 7 O 1.20824 * 119.99700 * 6.52177 * 6 4 2 8 8 O 1.34223 * 120.00168 * 186.51835 * 6 4 2 9 9 C 1.55156 * 101.48956 * 156.06002 * 4 2 1 10 10 C 1.54333 * 102.94041 * 324.33585 * 9 4 2 11 11 N 1.47023 * 107.26999 * 22.19063 * 10 9 4 12 12 C 1.34778 * 125.64700 * 181.02142 * 11 10 9 13 13 O 1.21585 * 120.00075 * 180.02562 * 12 11 10 14 14 N 1.34778 * 119.99798 * 0.02562 * 12 11 10 15 15 C 1.39950 * 119.99679 * 185.31997 * 14 12 11 16 16 C 1.38857 * 120.06889 * 33.27748 * 15 14 12 17 17 C 1.38117 * 119.92980 * 179.97438 * 16 15 14 18 18 C 1.38286 * 120.06725 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.93028 * 179.97438 * 18 17 16 20 20 C 1.50704 * 109.46845 * 90.00340 * 19 18 17 21 21 H 1.07999 * 119.99993 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00027 * 180.27591 * 20 19 18 23 23 N 1.31518 * 119.99911 * 359.72191 * 22 20 19 24 24 Si 1.86796 * 120.00066 * 179.72651 * 22 20 19 25 25 H 1.48492 * 109.47542 * 90.00087 * 24 22 20 26 26 H 1.48501 * 109.46979 * 210.00366 * 24 22 20 27 27 H 1.48504 * 109.47013 * 329.99619 * 24 22 20 28 28 C 1.38286 * 120.13859 * 0.28118 * 18 17 16 29 29 C 1.38117 * 120.07059 * 359.48303 * 28 18 17 30 30 H 1.09000 * 109.47051 * 180.83999 * 1 2 3 31 31 H 1.08999 * 109.46981 * 300.83960 * 1 2 3 32 32 H 1.09005 * 109.47051 * 60.84089 * 1 2 3 33 33 H 0.96699 * 117.00121 * 179.97438 * 8 6 4 34 34 H 1.08998 * 110.71996 * 205.97213 * 9 4 2 35 35 H 1.09002 * 110.86929 * 82.76724 * 9 4 2 36 36 H 1.08997 * 109.87981 * 262.77438 * 10 9 4 37 37 H 1.08996 * 109.87713 * 141.60963 * 10 9 4 38 38 H 0.97002 * 119.99793 * 5.31926 * 14 12 11 39 39 H 1.07999 * 120.04030 * 359.95955 * 16 15 14 40 40 H 1.07997 * 119.96735 * 179.97438 * 17 16 15 41 41 H 1.08994 * 109.47281 * 330.00656 * 19 18 17 42 42 H 1.08995 * 109.47056 * 209.99920 * 19 18 17 43 43 H 0.96991 * 120.00020 * 179.97438 * 23 22 20 44 44 H 1.08001 * 119.95838 * 179.72281 * 28 18 17 45 45 H 1.07994 * 120.03374 * 180.22996 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0693 -0.7802 1.2275 5 1 1.4551 -1.6555 1.4397 6 6 2.1633 0.1159 2.4355 7 8 1.7276 1.2418 2.3878 8 8 2.7309 -0.3368 3.5644 9 6 3.4797 -1.1972 0.7333 10 6 3.2525 -1.4724 -0.7682 11 7 2.0431 -0.7384 -1.1683 12 6 1.4972 -0.7362 -2.4006 13 8 0.4912 -0.0892 -2.6187 14 7 2.0665 -1.4514 -3.3910 15 6 1.5665 -1.3620 -4.6951 16 6 1.0328 -0.1655 -5.1551 17 6 0.5406 -0.0803 -6.4428 18 6 0.5794 -1.1850 -7.2738 19 6 0.0410 -1.0888 -8.6780 20 6 1.1448 -0.6620 -9.6111 21 1 2.1370 -0.4792 -9.2258 22 6 0.8868 -0.5000 -10.9557 23 7 -0.3214 -0.7232 -11.4250 24 14 2.2531 0.0364 -12.1110 25 1 2.9505 -1.1617 -12.6430 26 1 1.6734 0.8124 -13.2367 27 1 3.2216 0.8854 -11.3717 28 6 1.1054 -2.3795 -6.8168 29 6 1.6036 -2.4697 -5.5318 30 1 -0.3633 -1.0276 0.0151 31 1 -0.3633 0.5268 0.8824 32 1 -0.3633 0.5007 -0.8975 33 1 2.7685 0.2746 4.3127 34 1 3.8163 -2.0993 1.2442 35 1 4.1953 -0.3869 0.8729 36 1 3.1090 -2.5404 -0.9316 37 1 4.1081 -1.1188 -1.3434 38 1 2.8228 -2.0280 -3.1999 39 1 1.0024 0.6977 -4.5067 40 1 0.1251 0.8499 -6.8011 41 1 -0.7646 -0.3553 -8.7088 42 1 -0.3410 -2.0614 -8.9881 43 1 -0.5030 -0.6088 -12.3709 44 1 1.1302 -3.2416 -7.4668 45 1 2.0177 -3.4018 -5.1768 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594152603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:12 Heat of formation + Delta-G solvation = -90.384676 kcal Electronic energy + Delta-G solvation = -27674.932329 eV Core-core repulsion = 23657.296611 eV Total energy + Delta-G solvation = -4017.635718 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.38285 -40.44680 -38.86132 -37.53271 -36.61309 -34.94265 -33.16929 -32.33105 -31.73342 -30.27594 -30.15698 -27.27479 -26.42778 -24.12687 -23.36336 -22.81750 -22.30650 -21.20320 -20.29773 -19.67695 -18.77692 -18.11287 -17.52573 -17.11007 -16.27100 -16.11496 -15.79980 -15.27836 -14.93084 -14.88081 -14.39318 -14.24670 -14.17729 -13.92872 -13.67574 -13.17148 -13.00599 -12.77508 -12.69724 -12.57065 -12.34016 -12.09154 -11.97474 -11.89012 -11.59226 -11.35957 -11.32031 -11.23202 -11.00338 -10.77452 -10.57774 -10.32404 -10.04230 -9.81896 -9.41700 -9.23917 -8.97473 -8.39352 -8.24230 -7.31657 -6.00574 -4.04481 1.63764 1.94751 2.08412 2.13945 2.65918 3.13231 3.32168 3.38451 3.42788 3.55371 3.82258 3.93601 4.27525 4.41546 4.56132 4.60829 4.63267 4.79766 4.97044 5.06929 5.13476 5.24814 5.33246 5.37750 5.44548 5.48446 5.60239 5.80363 5.80666 5.94412 5.97429 6.09651 6.18280 6.24249 6.34298 6.61025 6.70944 6.97762 7.04159 7.21457 7.25886 7.33755 7.55752 7.76365 7.79255 7.91287 7.95320 8.36134 8.48122 9.00898 9.58984 11.08967 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031603 B = 0.002002 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.790392 B =13983.557255 C =14149.141987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.174 3.826 3 H 0.088 0.912 4 C -0.099 4.099 5 H 0.127 0.873 6 C 0.492 3.508 7 O -0.504 6.504 8 O -0.514 6.514 9 C -0.115 4.115 10 C 0.095 3.905 11 N -0.637 5.637 12 C 0.723 3.277 13 O -0.560 6.560 14 N -0.678 5.678 15 C 0.123 3.877 16 C -0.116 4.116 17 C -0.107 4.107 18 C -0.044 4.044 19 C 0.048 3.952 20 C -0.510 4.510 21 H 0.057 0.943 22 C 0.057 3.943 23 N -0.894 5.894 24 Si 0.895 3.105 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.273 1.273 28 C -0.107 4.107 29 C -0.145 4.145 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.413 0.587 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.400 0.600 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.029 0.971 42 H 0.028 0.972 43 H 0.262 0.738 44 H 0.122 0.878 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.996 -3.909 30.267 31.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.071 3.929 3 H 0.106 0.894 4 C -0.119 4.119 5 H 0.144 0.856 6 C 0.333 3.667 7 O -0.391 6.391 8 O -0.326 6.326 9 C -0.153 4.153 10 C -0.028 4.028 11 N -0.377 5.377 12 C 0.426 3.574 13 O -0.436 6.436 14 N -0.325 5.325 15 C 0.030 3.970 16 C -0.137 4.137 17 C -0.125 4.125 18 C -0.045 4.045 19 C 0.011 3.989 20 C -0.548 4.548 21 H 0.075 0.925 22 C -0.144 4.144 23 N -0.533 5.533 24 Si 0.723 3.277 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.198 1.198 28 C -0.126 4.126 29 C -0.166 4.166 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.272 0.728 34 H 0.117 0.883 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.235 0.765 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.071 0.929 44 H 0.140 0.860 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.985 -3.358 29.545 30.789 hybrid contribution 1.266 0.278 0.019 1.296 sum 9.251 -3.080 29.564 31.131 Atomic orbital electron populations 1.22221 0.92760 1.02818 1.04637 1.21528 0.96047 0.94732 0.80635 0.89374 1.22312 1.00364 0.98967 0.90235 0.85567 1.22902 0.73576 0.86437 0.83751 1.90777 1.44296 1.20558 1.83477 1.84511 1.74300 1.50129 1.23691 1.22594 0.94593 1.03641 0.94467 1.22064 0.88277 0.97165 0.95287 1.47593 1.29104 1.52322 1.08683 1.15337 0.82578 0.80661 0.78804 1.90916 1.25091 1.46800 1.80770 1.42498 1.35643 1.47976 1.06413 1.17281 1.02550 0.94573 0.82563 1.21008 1.00502 0.96246 0.95909 1.20994 1.00059 0.98954 0.92515 1.20701 0.94286 0.91989 0.97523 1.18348 0.96347 0.98250 0.85970 1.21072 0.95872 1.45911 0.91946 0.92471 1.25021 0.95602 0.95532 0.98286 1.69959 1.19878 1.49325 1.14169 0.86541 0.82046 0.78696 0.80441 1.20643 1.21205 1.19836 1.20860 0.99024 0.98402 0.94317 1.20683 1.04602 0.96057 0.95230 0.92590 0.91740 0.88381 0.72790 0.88335 0.89735 0.90821 0.90673 0.76531 0.85734 0.86122 0.95288 0.95338 0.92883 0.86034 0.86933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 8.71 37.15 0.32 -1.48 16 2 C 0.17 1.64 2.83 -66.30 -0.19 1.45 16 3 H 0.09 0.95 7.53 -51.93 -0.39 0.56 16 4 C -0.10 -0.60 2.97 -89.50 -0.27 -0.86 16 5 H 0.13 0.61 8.07 -51.92 -0.42 0.20 16 6 C 0.49 3.36 7.64 36.01 0.27 3.63 16 7 O -0.50 -5.18 16.37 -18.75 -0.31 -5.48 16 8 O -0.51 -2.17 13.41 -39.24 -0.53 -2.69 16 9 C -0.12 -0.47 6.39 -24.89 -0.16 -0.63 16 10 C 0.10 0.53 6.16 -3.06 -0.02 0.51 16 11 N -0.64 -6.27 3.24 -168.59 -0.55 -6.82 16 12 C 0.72 9.97 8.01 -86.92 -0.70 9.27 16 13 O -0.56 -9.83 11.67 5.29 0.06 -9.77 16 14 N -0.68 -8.76 5.30 -14.22 -0.08 -8.84 16 15 C 0.12 2.05 6.28 -83.69 -0.53 1.52 16 16 C -0.12 -2.20 8.66 -39.40 -0.34 -2.54 16 17 C -0.11 -2.21 9.69 -39.61 -0.38 -2.60 16 18 C -0.04 -0.98 5.07 -104.59 -0.53 -1.51 16 19 C 0.05 1.24 5.10 -29.03 -0.15 1.09 16 20 C -0.51 -14.36 9.09 -34.44 -0.31 -14.67 16 21 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 22 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 23 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 24 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 28 C -0.11 -2.08 9.69 -39.61 -0.38 -2.46 16 29 C -0.15 -2.38 9.96 -39.39 -0.39 -2.77 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.64 7.95 -51.93 -0.41 0.23 16 32 H 0.10 1.37 5.88 -51.93 -0.31 1.06 16 33 H 0.41 0.19 9.10 45.56 0.41 0.60 16 34 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.08 0.33 8.04 -51.93 -0.42 -0.08 16 36 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.40 3.73 7.80 -40.82 -0.32 3.41 16 39 H 0.12 2.36 6.41 -52.49 -0.34 2.02 16 40 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 41 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 42 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.12 2.25 8.06 -52.49 -0.42 1.82 16 45 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 375.56 15.07 5.66 5.66 Total: -1.00 -35.55 375.56 -9.39 -44.93 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.52 Total: 2.75 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -3.84 Total: -10.51 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.11 Total: -41.54 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.77 Total: -17.94 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.55 -9.39 -44.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594152603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.450 kcal (2) G-P(sol) polarization free energy of solvation -35.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds