Wall clock time and date at job start Tue Mar 31 2020 17:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 110.41559 * 2 1 4 4 C 1.55128 * 110.34617 * 122.44129 * 2 1 3 5 5 H 1.09008 * 111.21986 * 37.94314 * 4 2 1 6 6 C 1.50701 * 110.90923 * 274.04200 * 4 2 1 7 7 O 1.20824 * 119.99700 * 6.52177 * 6 4 2 8 8 O 1.34223 * 120.00168 * 186.51835 * 6 4 2 9 9 C 1.55156 * 101.48956 * 156.06002 * 4 2 1 10 10 C 1.54333 * 102.94041 * 324.33585 * 9 4 2 11 11 N 1.47023 * 107.26999 * 22.19063 * 10 9 4 12 12 C 1.34778 * 125.64700 * 181.02142 * 11 10 9 13 13 O 1.21585 * 120.00075 * 180.02562 * 12 11 10 14 14 N 1.34778 * 119.99798 * 0.02562 * 12 11 10 15 15 C 1.39950 * 119.99679 * 185.31997 * 14 12 11 16 16 C 1.38857 * 120.06889 * 33.27748 * 15 14 12 17 17 C 1.38117 * 119.92980 * 179.97438 * 16 15 14 18 18 C 1.38286 * 120.06725 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.93028 * 179.97438 * 18 17 16 20 20 C 1.50704 * 109.46845 * 90.00340 * 19 18 17 21 21 H 1.07999 * 119.99993 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00027 * 180.27591 * 20 19 18 23 23 N 1.31518 * 119.99911 * 359.72191 * 22 20 19 24 24 Si 1.86796 * 120.00066 * 179.72651 * 22 20 19 25 25 H 1.48492 * 109.47542 * 90.00087 * 24 22 20 26 26 H 1.48501 * 109.46979 * 210.00366 * 24 22 20 27 27 H 1.48504 * 109.47013 * 329.99619 * 24 22 20 28 28 C 1.38286 * 120.13859 * 0.28118 * 18 17 16 29 29 C 1.38117 * 120.07059 * 359.48303 * 28 18 17 30 30 H 1.09000 * 109.47051 * 180.83999 * 1 2 3 31 31 H 1.08999 * 109.46981 * 300.83960 * 1 2 3 32 32 H 1.09005 * 109.47051 * 60.84089 * 1 2 3 33 33 H 0.96699 * 117.00121 * 179.97438 * 8 6 4 34 34 H 1.08998 * 110.71996 * 205.97213 * 9 4 2 35 35 H 1.09002 * 110.86929 * 82.76724 * 9 4 2 36 36 H 1.08997 * 109.87981 * 262.77438 * 10 9 4 37 37 H 1.08996 * 109.87713 * 141.60963 * 10 9 4 38 38 H 0.97002 * 119.99793 * 5.31926 * 14 12 11 39 39 H 1.07999 * 120.04030 * 359.95955 * 16 15 14 40 40 H 1.07997 * 119.96735 * 179.97438 * 17 16 15 41 41 H 1.08994 * 109.47281 * 330.00656 * 19 18 17 42 42 H 1.08995 * 109.47056 * 209.99920 * 19 18 17 43 43 H 0.96991 * 120.00020 * 179.97438 * 23 22 20 44 44 H 1.08001 * 119.95838 * 179.72281 * 28 18 17 45 45 H 1.07994 * 120.03374 * 180.22996 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0693 -0.7802 1.2275 5 1 1.4551 -1.6555 1.4397 6 6 2.1633 0.1159 2.4355 7 8 1.7276 1.2418 2.3878 8 8 2.7309 -0.3368 3.5644 9 6 3.4797 -1.1972 0.7333 10 6 3.2525 -1.4724 -0.7682 11 7 2.0431 -0.7384 -1.1683 12 6 1.4972 -0.7362 -2.4006 13 8 0.4912 -0.0892 -2.6187 14 7 2.0665 -1.4514 -3.3910 15 6 1.5665 -1.3620 -4.6951 16 6 1.0328 -0.1655 -5.1551 17 6 0.5406 -0.0803 -6.4428 18 6 0.5794 -1.1850 -7.2738 19 6 0.0410 -1.0888 -8.6780 20 6 1.1448 -0.6620 -9.6111 21 1 2.1370 -0.4792 -9.2258 22 6 0.8868 -0.5000 -10.9557 23 7 -0.3214 -0.7232 -11.4250 24 14 2.2531 0.0364 -12.1110 25 1 2.9505 -1.1617 -12.6430 26 1 1.6734 0.8124 -13.2367 27 1 3.2216 0.8854 -11.3717 28 6 1.1054 -2.3795 -6.8168 29 6 1.6036 -2.4697 -5.5318 30 1 -0.3633 -1.0276 0.0151 31 1 -0.3633 0.5268 0.8824 32 1 -0.3633 0.5007 -0.8975 33 1 2.7685 0.2746 4.3127 34 1 3.8163 -2.0993 1.2442 35 1 4.1953 -0.3869 0.8729 36 1 3.1090 -2.5404 -0.9316 37 1 4.1081 -1.1188 -1.3434 38 1 2.8228 -2.0280 -3.1999 39 1 1.0024 0.6977 -4.5067 40 1 0.1251 0.8499 -6.8011 41 1 -0.7646 -0.3553 -8.7088 42 1 -0.3410 -2.0614 -8.9881 43 1 -0.5030 -0.6088 -12.3709 44 1 1.1302 -3.2416 -7.4668 45 1 2.0177 -3.4018 -5.1768 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594152603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:11 Heat of formation + Delta-G solvation = -114.045300 kcal Electronic energy + Delta-G solvation = -27675.958331 eV Core-core repulsion = 23657.296611 eV Total energy + Delta-G solvation = -4018.661720 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.13183 -41.29580 -40.01639 -38.53496 -37.10798 -36.30290 -35.03358 -33.36080 -32.43262 -31.77270 -31.72842 -28.50055 -27.63468 -25.44859 -24.37026 -23.89849 -23.60110 -22.17801 -21.42435 -20.72212 -19.47595 -18.78250 -18.49411 -18.27015 -18.16023 -16.88962 -16.74465 -16.51232 -16.15263 -15.95671 -15.85014 -15.20818 -14.95944 -14.90070 -14.57946 -14.49206 -14.33750 -14.19811 -13.82902 -13.64161 -13.31564 -13.24093 -13.11058 -13.01149 -12.65646 -12.59516 -12.55093 -12.44416 -12.16258 -11.99803 -11.85355 -11.64633 -11.54122 -11.48955 -11.12997 -10.80298 -10.58611 -9.80200 -9.73548 -8.80077 -8.16349 -6.31255 0.50225 0.59904 1.13523 1.28657 1.40537 1.42178 1.53520 1.98880 2.15816 2.41520 2.82212 3.03987 3.12398 3.18496 3.42372 3.85519 4.06127 4.11337 4.13698 4.17662 4.25352 4.40758 4.44033 4.51113 4.58269 4.64767 4.68303 4.71295 4.73676 4.92790 5.01729 5.06667 5.10807 5.14664 5.31248 5.36085 5.41227 5.45816 5.53977 5.59294 5.64402 5.77644 5.95585 6.11054 6.14880 6.28264 6.81504 6.83810 6.96068 7.36952 7.44621 8.91340 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031603 B = 0.002002 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.790392 B =13983.557255 C =14149.141987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.169 3.831 3 H 0.069 0.931 4 C -0.091 4.091 5 H 0.146 0.854 6 C 0.500 3.500 7 O -0.547 6.547 8 O -0.503 6.503 9 C -0.104 4.104 10 C 0.085 3.915 11 N -0.630 5.630 12 C 0.717 3.283 13 O -0.605 6.605 14 N -0.664 5.664 15 C 0.141 3.859 16 C -0.124 4.124 17 C -0.120 4.120 18 C -0.077 4.077 19 C 0.057 3.943 20 C -0.526 4.526 21 H 0.056 0.944 22 C 0.001 3.999 23 N -0.931 5.931 24 Si 0.967 3.033 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.267 1.267 28 C -0.111 4.111 29 C -0.127 4.127 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.430 0.570 34 H 0.131 0.869 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.422 0.578 39 H 0.120 0.880 40 H 0.107 0.893 41 H -0.003 1.003 42 H 0.008 0.992 43 H 0.265 0.735 44 H 0.128 0.872 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.313 -6.093 32.749 35.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.065 3.935 3 H 0.087 0.913 4 C -0.111 4.111 5 H 0.163 0.837 6 C 0.343 3.657 7 O -0.437 6.437 8 O -0.317 6.317 9 C -0.141 4.141 10 C -0.036 4.036 11 N -0.368 5.368 12 C 0.419 3.581 13 O -0.484 6.484 14 N -0.313 5.313 15 C 0.046 3.954 16 C -0.144 4.144 17 C -0.139 4.139 18 C -0.078 4.078 19 C 0.020 3.980 20 C -0.564 4.564 21 H 0.074 0.926 22 C -0.197 4.197 23 N -0.571 5.571 24 Si 0.791 3.209 25 H -0.193 1.193 26 H -0.207 1.207 27 H -0.191 1.191 28 C -0.129 4.129 29 C -0.147 4.147 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.292 0.708 34 H 0.149 0.851 35 H 0.105 0.895 36 H 0.118 0.882 37 H 0.105 0.895 38 H 0.261 0.739 39 H 0.138 0.862 40 H 0.125 0.875 41 H 0.016 0.984 42 H 0.026 0.974 43 H 0.074 0.926 44 H 0.146 0.854 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 11.373 -5.581 32.111 34.520 hybrid contribution 0.232 0.957 -0.539 1.123 sum 11.605 -4.624 31.572 33.954 Atomic orbital electron populations 1.22087 0.94218 1.02547 1.02907 1.21500 0.94986 0.94710 0.82323 0.91256 1.22232 1.01946 0.98540 0.88363 0.83670 1.22979 0.72656 0.85682 0.84406 1.90780 1.46315 1.22418 1.84229 1.84464 1.73269 1.50366 1.23592 1.22653 0.93010 1.05160 0.93294 1.22464 0.86553 0.98106 0.96478 1.47559 1.30029 1.51945 1.07312 1.15535 0.82315 0.80302 0.79919 1.90913 1.27257 1.48452 1.81819 1.42259 1.36086 1.48257 1.04721 1.17320 1.00443 0.93570 0.84023 1.20974 1.01151 0.97459 0.94857 1.20889 1.01118 0.98301 0.93542 1.20391 0.97411 0.94104 0.95888 1.18089 0.95234 0.95897 0.88782 1.21389 0.96244 1.45930 0.92791 0.92581 1.25966 0.98186 0.95413 1.00104 1.70090 1.22035 1.50284 1.14721 0.85413 0.78832 0.78628 0.77983 1.19335 1.20705 1.19131 1.20971 0.98781 0.97289 0.95896 1.20981 1.02768 0.97535 0.93433 0.92101 0.91463 0.91990 0.70760 0.85116 0.89513 0.88234 0.89468 0.73900 0.86246 0.87500 0.98430 0.97410 0.92630 0.85395 0.82147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 8.71 71.98 0.63 -2.88 16 2 C 0.17 3.00 2.83 45.54 0.13 3.13 16 3 H 0.07 1.51 7.53 -2.38 -0.02 1.49 16 4 C -0.09 -0.83 2.97 -10.07 -0.03 -0.86 16 5 H 0.15 0.84 8.07 -2.38 -0.02 0.82 16 6 C 0.50 5.73 7.64 71.24 0.54 6.27 16 7 O -0.55 -10.89 16.37 21.97 0.36 -10.53 16 8 O -0.50 -2.63 13.41 -51.35 -0.69 -3.32 16 9 C -0.10 -0.38 6.39 31.79 0.20 -0.17 16 10 C 0.09 0.58 6.16 86.73 0.53 1.12 16 11 N -0.63 -11.04 3.24 -805.55 -2.61 -13.65 16 12 C 0.72 18.77 8.01 179.05 1.43 20.20 16 13 O -0.61 -21.64 11.67 -3.99 -0.05 -21.69 16 14 N -0.66 -15.25 5.30 -317.18 -1.68 -16.93 16 15 C 0.14 4.43 6.28 38.14 0.24 4.67 16 16 C -0.12 -4.75 8.66 22.39 0.19 -4.56 16 17 C -0.12 -5.23 9.69 22.25 0.22 -5.02 16 18 C -0.08 -3.56 5.07 -19.84 -0.10 -3.66 16 19 C 0.06 3.15 5.10 29.10 0.15 3.30 16 20 C -0.53 -30.61 9.09 25.60 0.23 -30.38 16 21 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 22 C 0.00 0.07 5.46 84.65 0.46 0.53 16 23 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 24 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 26 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 27 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 28 C -0.11 -4.22 9.69 22.25 0.22 -4.01 16 29 C -0.13 -3.79 9.96 22.39 0.22 -3.56 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.38 7.95 -2.39 -0.02 1.37 16 32 H 0.06 1.84 5.88 -2.38 -0.01 1.83 16 33 H 0.43 -0.81 9.10 -74.06 -0.67 -1.48 16 34 H 0.13 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H 0.09 0.33 8.04 -2.39 -0.02 0.31 16 36 H 0.10 0.25 8.12 -2.39 -0.02 0.24 16 37 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.42 5.93 7.80 -92.71 -0.72 5.20 16 39 H 0.12 4.69 6.41 -2.91 -0.02 4.67 16 40 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 41 H 0.00 -0.16 8.08 -2.39 -0.02 -0.18 16 42 H 0.01 0.44 8.08 -2.39 -0.02 0.42 16 43 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 44 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 45 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -82.68 375.56 2.55 -80.13 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -0.36 Total: 11.82 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 5.27 Total: -15.88 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -4.01 Total: -87.46 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -0.38 Total: -35.54 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -82.68 2.55 -80.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594152603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.919 kcal (2) G-P(sol) polarization free energy of solvation -82.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds