Wall clock time and date at job start Tue Mar 31 2020 17:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.21895 * 2 1 4 4 C 1.52735 * 109.25553 * 240.54492 * 2 1 3 5 5 C 1.53246 * 108.34852 * 188.60522 * 4 2 1 6 6 C 1.52736 * 108.43011 * 69.92771 * 5 4 2 7 7 N 1.46901 * 109.25380 * 69.22681 * 6 5 4 8 8 C 1.46904 * 110.99953 * 60.18318 * 7 6 5 9 9 C 1.50703 * 109.47001 * 174.72358 * 8 7 6 10 10 O 1.21294 * 119.99940 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99925 * 179.97438 * 9 8 7 12 12 C 1.37105 * 119.99809 * 179.97438 * 11 9 8 13 13 H 1.08002 * 120.00053 * 0.02562 * 12 11 9 14 14 C 1.38944 * 119.99737 * 180.02562 * 12 11 9 15 15 N 1.31418 * 119.99677 * 179.72483 * 14 12 11 16 16 Si 1.86793 * 120.00272 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47089 * 269.72723 * 16 14 12 18 18 H 1.48501 * 109.47334 * 29.72273 * 16 14 12 19 19 H 1.48501 * 109.47452 * 149.72573 * 16 14 12 20 20 C 1.50702 * 109.25307 * 188.68782 * 6 5 4 21 21 O 1.20826 * 119.99760 * 26.64699 * 20 6 5 22 22 O 1.34226 * 120.00070 * 206.65027 * 20 6 5 23 23 C 1.50626 * 110.56465 * 308.95540 * 6 5 4 24 24 C 1.38915 * 117.75228 * 197.47537 * 23 6 5 25 25 C 1.37925 * 120.54595 * 180.24253 * 24 23 6 26 26 C 1.38262 * 119.77472 * 0.02562 * 25 24 23 27 27 C 1.37936 * 119.77265 * 359.89709 * 26 25 24 28 28 C 1.37661 * 122.56954 * 17.52604 * 23 6 5 29 29 H 1.09004 * 109.46899 * 300.54856 * 1 2 3 30 30 H 1.09005 * 109.47007 * 60.54633 * 1 2 3 31 31 H 1.08995 * 109.47046 * 180.54619 * 1 2 3 32 32 H 1.08995 * 109.68398 * 308.32086 * 4 2 1 33 33 H 1.08999 * 109.68343 * 68.84437 * 4 2 1 34 34 H 1.08996 * 109.68909 * 310.17092 * 5 4 2 35 35 H 1.09003 * 109.63460 * 189.64794 * 5 4 2 36 36 H 1.00901 * 111.00227 * 184.13986 * 7 6 5 37 37 H 1.09005 * 109.46946 * 54.72847 * 8 7 6 38 38 H 1.08999 * 109.47304 * 294.72033 * 8 7 6 39 39 H 0.97000 * 120.00068 * 0.02562 * 11 9 8 40 40 H 0.97004 * 119.99438 * 180.27443 * 15 14 12 41 41 H 0.96703 * 116.99509 * 179.97438 * 22 20 6 42 42 H 1.07999 * 119.72494 * 0.22148 * 24 23 6 43 43 H 1.08001 * 120.11206 * 180.02562 * 25 24 23 44 44 H 1.08006 * 120.11474 * 179.87415 * 26 25 24 45 45 H 1.07997 * 119.73195 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8888 1.0293 0.0000 4 6 2.0337 -0.7090 -1.2555 5 6 3.5505 -0.8893 -1.1321 6 6 3.8267 -1.9270 -0.0459 7 7 3.3912 -3.2486 -0.5168 8 6 4.1148 -3.6384 -1.7344 9 6 3.7380 -5.0475 -2.1132 10 8 2.9443 -5.6660 -1.4359 11 7 4.2820 -5.6201 -3.2053 12 6 3.9395 -6.9023 -3.5497 13 1 3.2335 -7.4533 -2.9461 14 6 4.5008 -7.4927 -4.6752 15 7 4.1767 -8.7236 -5.0023 16 14 5.7225 -6.5400 -5.7188 17 1 4.9951 -5.8011 -6.7819 18 1 6.4598 -5.5766 -4.8623 19 1 6.6840 -7.4848 -6.3419 20 6 5.3057 -1.9644 0.2411 21 8 5.9844 -0.9846 0.0431 22 8 5.8689 -3.0862 0.7166 23 6 3.0841 -1.5805 1.2179 24 6 3.4979 -2.1858 2.3978 25 6 2.8556 -1.9139 3.5878 26 6 1.7908 -1.0322 3.6074 27 6 1.3794 -0.4289 2.4372 28 6 2.0268 -0.6992 1.2383 29 1 -0.3633 0.5224 0.8851 30 1 -0.3633 0.5053 -0.8949 31 1 -0.3633 -1.0276 0.0098 32 1 1.5540 -1.6838 -1.3441 33 1 1.8051 -0.1061 -2.1343 34 1 4.0121 0.0596 -0.8591 35 1 3.9568 -1.2356 -2.0824 36 1 3.4995 -3.9439 0.2064 37 1 5.1882 -3.5861 -1.5516 38 1 3.8509 -2.9610 -2.5465 39 1 4.9164 -5.1254 -3.7472 40 1 4.5716 -9.1372 -5.7858 41 1 6.8208 -3.0620 0.8850 42 1 4.3291 -2.8752 2.3832 43 1 3.1834 -2.3882 4.5011 44 1 1.2826 -0.8169 4.5358 45 1 0.5473 0.2593 2.4533 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594323995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:41 Heat of formation + Delta-G solvation = -96.100221 kcal Electronic energy + Delta-G solvation = -29495.391669 eV Core-core repulsion = 25477.508106 eV Total energy + Delta-G solvation = -4017.883563 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.50954 -39.62713 -38.47848 -36.90318 -36.25258 -35.42973 -33.99064 -31.99714 -31.61547 -30.50548 -29.68341 -27.75152 -25.90900 -24.05829 -23.54027 -23.05293 -22.67481 -20.60942 -19.43937 -19.09934 -18.47097 -18.20409 -17.31338 -17.12160 -15.90051 -15.84340 -15.67760 -15.28512 -15.08470 -14.71325 -14.27615 -14.13582 -13.91717 -13.72998 -13.49559 -13.30197 -13.13108 -12.69113 -12.66535 -12.40428 -12.19348 -12.12857 -11.98887 -11.85488 -11.76901 -11.53846 -11.39833 -11.22284 -11.07500 -10.98888 -10.61354 -10.44410 -10.30065 -9.99619 -9.59793 -9.02380 -8.77310 -8.66744 -8.37195 -8.20359 -6.33114 -3.84689 1.11467 1.24753 2.01991 2.81037 3.01125 3.05661 3.13944 3.56444 3.69157 4.01056 4.08792 4.31512 4.36490 4.65108 4.69104 4.79826 4.84048 4.94660 4.99774 5.09754 5.19530 5.21890 5.27879 5.38099 5.47891 5.52058 5.59653 5.62602 5.67429 5.75539 5.82671 5.83826 5.88611 5.92986 6.02535 6.08793 6.29356 6.32839 6.37773 6.40941 6.48561 6.77957 6.85278 7.38207 7.54803 7.71593 8.11496 8.56463 8.92195 9.39562 9.78289 10.79840 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016108 B = 0.003375 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.844853 B = 8293.901819 C = 8540.295132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.055 4.055 3 H 0.082 0.918 4 C -0.111 4.111 5 C -0.105 4.105 6 C 0.179 3.821 7 N -0.634 5.634 8 C 0.038 3.962 9 C 0.454 3.546 10 O -0.562 6.562 11 N -0.588 5.588 12 C -0.305 4.305 13 H 0.121 0.879 14 C 0.042 3.958 15 N -0.880 5.880 16 Si 0.879 3.121 17 H -0.270 1.270 18 H -0.270 1.270 19 H -0.276 1.276 20 C 0.454 3.546 21 O -0.512 6.512 22 O -0.512 6.512 23 C -0.067 4.067 24 C -0.112 4.112 25 C -0.123 4.123 26 C -0.111 4.111 27 C -0.124 4.124 28 C -0.041 4.041 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.366 0.634 37 H 0.047 0.953 38 H 0.093 0.907 39 H 0.370 0.630 40 H 0.274 0.726 41 H 0.408 0.592 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.061 20.088 12.621 23.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.073 4.073 3 H 0.100 0.900 4 C -0.148 4.148 5 C -0.143 4.143 6 C 0.085 3.915 7 N -0.269 5.269 8 C -0.094 4.094 9 C 0.239 3.761 10 O -0.444 6.444 11 N -0.227 5.227 12 C -0.433 4.433 13 H 0.138 0.862 14 C -0.161 4.161 15 N -0.520 5.520 16 Si 0.705 3.295 17 H -0.195 1.195 18 H -0.196 1.196 19 H -0.201 1.201 20 C 0.293 3.707 21 O -0.398 6.398 22 O -0.324 6.324 23 C -0.068 4.068 24 C -0.131 4.131 25 C -0.141 4.141 26 C -0.129 4.129 27 C -0.142 4.142 28 C -0.042 4.042 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.188 0.812 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.267 0.733 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.351 19.945 12.449 23.628 hybrid contribution 2.744 0.265 -0.408 2.787 sum 0.393 20.210 12.041 23.528 Atomic orbital electron populations 1.21906 0.93962 1.02726 1.01661 1.20103 0.96179 0.98846 0.92155 0.90033 1.21598 0.94094 1.02565 0.96561 1.21648 0.98145 0.97516 0.96962 1.19865 0.83082 0.94080 0.94457 1.60317 1.56794 1.01717 1.08039 1.21921 0.96029 0.97312 0.94118 1.19477 0.85583 0.87461 0.83573 1.90580 1.36513 1.64343 1.52977 1.42178 1.40808 1.15020 1.24724 1.19432 1.25582 0.88027 1.10304 0.86184 1.25031 0.97980 0.95868 0.97185 1.69625 1.43305 1.12327 1.26716 0.86687 0.81548 0.80080 0.81163 1.19524 1.19578 1.20146 1.25073 0.93080 0.80067 0.72487 1.90678 1.64640 1.35872 1.48595 1.84625 1.30719 1.40054 1.77028 1.18869 0.97063 0.98579 0.92273 1.21384 1.00421 0.98921 0.92359 1.21022 0.96565 0.98778 0.97759 1.21129 0.96798 0.96880 0.98134 1.21195 1.00241 1.00833 0.91946 1.19527 0.93957 0.95481 0.95185 0.92518 0.92207 0.91849 0.89028 0.90941 0.89938 0.90324 0.81152 0.93522 0.88852 0.79701 0.91581 0.73293 0.85477 0.85884 0.85966 0.85628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.69 37.16 0.32 -0.91 16 2 C -0.05 -0.53 2.77 -91.94 -0.25 -0.79 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.11 -1.20 5.23 -26.74 -0.14 -1.34 16 5 C -0.11 -1.26 4.29 -26.74 -0.11 -1.38 16 6 C 0.18 2.38 0.47 -134.07 -0.06 2.31 16 7 N -0.63 -9.88 5.08 -103.75 -0.53 -10.41 16 8 C 0.04 0.64 5.38 -4.97 -0.03 0.61 16 9 C 0.45 10.15 7.81 -10.98 -0.09 10.07 16 10 O -0.56 -14.82 15.66 5.55 0.09 -14.73 16 11 N -0.59 -13.88 5.09 -10.96 -0.06 -13.93 16 12 C -0.30 -8.55 10.16 -14.93 -0.15 -8.70 16 13 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 14 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 15 N -0.88 -25.54 13.96 55.50 0.77 -24.77 16 16 Si 0.88 19.28 27.74 -169.99 -4.72 14.56 16 17 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 18 H -0.27 -5.42 6.51 56.52 0.37 -5.06 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 20 C 0.45 6.13 4.96 36.01 0.18 6.31 16 21 O -0.51 -7.87 16.68 -18.75 -0.31 -8.19 16 22 O -0.51 -5.93 10.76 -39.25 -0.42 -6.36 16 23 C -0.07 -0.86 4.95 -104.62 -0.52 -1.38 16 24 C -0.11 -1.36 8.83 -39.45 -0.35 -1.71 16 25 C -0.12 -1.29 10.05 -39.69 -0.40 -1.68 16 26 C -0.11 -1.06 10.05 -39.68 -0.40 -1.46 16 27 C -0.12 -1.23 9.04 -39.44 -0.36 -1.59 16 28 C -0.04 -0.47 5.43 -104.61 -0.57 -1.03 16 29 H 0.06 0.40 6.41 -51.93 -0.33 0.07 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 1.19 7.58 -51.93 -0.39 0.79 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.98 7.49 -51.93 -0.39 0.60 16 35 H 0.08 0.94 6.04 -51.93 -0.31 0.62 16 36 H 0.37 6.19 7.67 -39.29 -0.30 5.89 16 37 H 0.05 0.73 6.39 -51.93 -0.33 0.40 16 38 H 0.09 1.38 6.38 -51.93 -0.33 1.05 16 39 H 0.37 7.72 5.76 -40.82 -0.23 7.49 16 40 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.41 3.00 9.10 45.56 0.41 3.42 16 42 H 0.13 1.50 6.23 -52.49 -0.33 1.17 16 43 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 45 H 0.13 0.97 6.34 -52.49 -0.33 0.64 16 LS Contribution 359.05 15.07 5.41 5.41 Total: -1.00 -34.04 359.05 -7.75 -41.78 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -4.97 Total: 18.24 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -3.02 Total: -1.61 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.19 Total: -49.10 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.65 Total: -29.28 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.72 Total: 14.56 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.04 -7.75 -41.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594323995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.319 kcal (2) G-P(sol) polarization free energy of solvation -34.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds