Wall clock time and date at job start Tue Mar 31 2020 17:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.21895 * 2 1 4 4 C 1.52735 * 109.25553 * 240.54492 * 2 1 3 5 5 C 1.53246 * 108.34852 * 188.60522 * 4 2 1 6 6 C 1.52736 * 108.43011 * 69.92771 * 5 4 2 7 7 N 1.46901 * 109.25380 * 69.22681 * 6 5 4 8 8 C 1.46904 * 110.99953 * 60.18318 * 7 6 5 9 9 C 1.50703 * 109.47001 * 174.72358 * 8 7 6 10 10 O 1.21294 * 119.99940 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99925 * 179.97438 * 9 8 7 12 12 C 1.37105 * 119.99809 * 179.97438 * 11 9 8 13 13 H 1.08002 * 120.00053 * 0.02562 * 12 11 9 14 14 C 1.38944 * 119.99737 * 180.02562 * 12 11 9 15 15 N 1.31418 * 119.99677 * 179.72483 * 14 12 11 16 16 Si 1.86793 * 120.00272 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47089 * 269.72723 * 16 14 12 18 18 H 1.48501 * 109.47334 * 29.72273 * 16 14 12 19 19 H 1.48501 * 109.47452 * 149.72573 * 16 14 12 20 20 C 1.50702 * 109.25307 * 188.68782 * 6 5 4 21 21 O 1.20826 * 119.99760 * 26.64699 * 20 6 5 22 22 O 1.34226 * 120.00070 * 206.65027 * 20 6 5 23 23 C 1.50626 * 110.56465 * 308.95540 * 6 5 4 24 24 C 1.38915 * 117.75228 * 197.47537 * 23 6 5 25 25 C 1.37925 * 120.54595 * 180.24253 * 24 23 6 26 26 C 1.38262 * 119.77472 * 0.02562 * 25 24 23 27 27 C 1.37936 * 119.77265 * 359.89709 * 26 25 24 28 28 C 1.37661 * 122.56954 * 17.52604 * 23 6 5 29 29 H 1.09004 * 109.46899 * 300.54856 * 1 2 3 30 30 H 1.09005 * 109.47007 * 60.54633 * 1 2 3 31 31 H 1.08995 * 109.47046 * 180.54619 * 1 2 3 32 32 H 1.08995 * 109.68398 * 308.32086 * 4 2 1 33 33 H 1.08999 * 109.68343 * 68.84437 * 4 2 1 34 34 H 1.08996 * 109.68909 * 310.17092 * 5 4 2 35 35 H 1.09003 * 109.63460 * 189.64794 * 5 4 2 36 36 H 1.00901 * 111.00227 * 184.13986 * 7 6 5 37 37 H 1.09005 * 109.46946 * 54.72847 * 8 7 6 38 38 H 1.08999 * 109.47304 * 294.72033 * 8 7 6 39 39 H 0.97000 * 120.00068 * 0.02562 * 11 9 8 40 40 H 0.97004 * 119.99438 * 180.27443 * 15 14 12 41 41 H 0.96703 * 116.99509 * 179.97438 * 22 20 6 42 42 H 1.07999 * 119.72494 * 0.22148 * 24 23 6 43 43 H 1.08001 * 120.11206 * 180.02562 * 25 24 23 44 44 H 1.08006 * 120.11474 * 179.87415 * 26 25 24 45 45 H 1.07997 * 119.73195 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8888 1.0293 0.0000 4 6 2.0337 -0.7090 -1.2555 5 6 3.5505 -0.8893 -1.1321 6 6 3.8267 -1.9270 -0.0459 7 7 3.3912 -3.2486 -0.5168 8 6 4.1148 -3.6384 -1.7344 9 6 3.7380 -5.0475 -2.1132 10 8 2.9443 -5.6660 -1.4359 11 7 4.2820 -5.6201 -3.2053 12 6 3.9395 -6.9023 -3.5497 13 1 3.2335 -7.4533 -2.9461 14 6 4.5008 -7.4927 -4.6752 15 7 4.1767 -8.7236 -5.0023 16 14 5.7225 -6.5400 -5.7188 17 1 4.9951 -5.8011 -6.7819 18 1 6.4598 -5.5766 -4.8623 19 1 6.6840 -7.4848 -6.3419 20 6 5.3057 -1.9644 0.2411 21 8 5.9844 -0.9846 0.0431 22 8 5.8689 -3.0862 0.7166 23 6 3.0841 -1.5805 1.2179 24 6 3.4979 -2.1858 2.3978 25 6 2.8556 -1.9139 3.5878 26 6 1.7908 -1.0322 3.6074 27 6 1.3794 -0.4289 2.4372 28 6 2.0268 -0.6992 1.2383 29 1 -0.3633 0.5224 0.8851 30 1 -0.3633 0.5053 -0.8949 31 1 -0.3633 -1.0276 0.0098 32 1 1.5540 -1.6838 -1.3441 33 1 1.8051 -0.1061 -2.1343 34 1 4.0121 0.0596 -0.8591 35 1 3.9568 -1.2356 -2.0824 36 1 3.4995 -3.9439 0.2064 37 1 5.1882 -3.5861 -1.5516 38 1 3.8509 -2.9610 -2.5465 39 1 4.9164 -5.1254 -3.7472 40 1 4.5716 -9.1372 -5.7858 41 1 6.8208 -3.0620 0.8850 42 1 4.3291 -2.8752 2.3832 43 1 3.1834 -2.3882 4.5011 44 1 1.2826 -0.8169 4.5358 45 1 0.5473 0.2593 2.4533 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594323995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:40 Heat of formation + Delta-G solvation = -120.941536 kcal Electronic energy + Delta-G solvation = -29496.468869 eV Core-core repulsion = 25477.508106 eV Total energy + Delta-G solvation = -4018.960763 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -42.49199 -40.52600 -40.27862 -37.87900 -37.32501 -36.40915 -35.92888 -33.79356 -32.98494 -31.33509 -30.49383 -28.99075 -27.28941 -25.61092 -24.46439 -23.89781 -23.61761 -21.55667 -21.24890 -20.32858 -20.01374 -19.24692 -18.43300 -18.27177 -17.28602 -16.88625 -16.74805 -16.61433 -16.35328 -15.98695 -15.70538 -15.17528 -15.00699 -14.81777 -14.66227 -14.49245 -14.37298 -14.20058 -13.85562 -13.67826 -13.45178 -13.15082 -13.00480 -12.93968 -12.79880 -12.58864 -12.43166 -12.41499 -12.26786 -12.04183 -11.99469 -11.87029 -11.53718 -11.26851 -11.13204 -10.50706 -10.27056 -9.90674 -9.60843 -9.54704 -8.42383 -6.03396 0.27674 0.44362 0.98372 1.29224 1.34104 1.42841 1.87721 1.90994 2.21416 2.50837 2.87710 3.12638 3.26351 3.39349 3.49377 3.84105 3.92610 4.00498 4.03188 4.15249 4.20260 4.24667 4.31787 4.37074 4.49339 4.52752 4.62394 4.68637 4.76692 4.88278 4.94223 5.06599 5.10059 5.15364 5.24851 5.35739 5.37274 5.47170 5.52413 5.57825 5.60326 5.66979 5.70043 5.92954 6.07083 6.07830 6.56180 6.79426 6.85157 7.35788 7.90452 8.74966 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016108 B = 0.003375 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.844853 B = 8293.901819 C = 8540.295132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.053 4.053 3 H 0.097 0.903 4 C -0.108 4.108 5 C -0.106 4.106 6 C 0.180 3.820 7 N -0.641 5.641 8 C 0.054 3.946 9 C 0.456 3.544 10 O -0.607 6.607 11 N -0.588 5.588 12 C -0.328 4.328 13 H 0.058 0.942 14 C -0.011 4.011 15 N -0.931 5.931 16 Si 0.961 3.039 17 H -0.255 1.255 18 H -0.235 1.235 19 H -0.274 1.274 20 C 0.458 3.542 21 O -0.532 6.532 22 O -0.514 6.514 23 C -0.091 4.091 24 C -0.132 4.132 25 C -0.132 4.132 26 C -0.111 4.111 27 C -0.127 4.127 28 C -0.054 4.054 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.355 0.645 37 H 0.065 0.935 38 H 0.120 0.880 39 H 0.389 0.611 40 H 0.280 0.720 41 H 0.426 0.574 42 H 0.122 0.878 43 H 0.141 0.859 44 H 0.151 0.849 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.161 23.484 12.526 26.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.071 4.071 3 H 0.115 0.885 4 C -0.145 4.145 5 C -0.143 4.143 6 C 0.087 3.913 7 N -0.274 5.274 8 C -0.078 4.078 9 C 0.243 3.757 10 O -0.492 6.492 11 N -0.229 5.229 12 C -0.457 4.457 13 H 0.077 0.923 14 C -0.210 4.210 15 N -0.572 5.572 16 Si 0.781 3.219 17 H -0.180 1.180 18 H -0.159 1.159 19 H -0.199 1.199 20 C 0.299 3.701 21 O -0.420 6.420 22 O -0.328 6.328 23 C -0.092 4.092 24 C -0.150 4.150 25 C -0.150 4.150 26 C -0.129 4.129 27 C -0.145 4.145 28 C -0.054 4.054 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.176 0.824 37 H 0.083 0.917 38 H 0.138 0.862 39 H 0.224 0.776 40 H 0.089 0.911 41 H 0.288 0.712 42 H 0.139 0.861 43 H 0.159 0.841 44 H 0.168 0.832 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.437 23.360 12.372 26.473 hybrid contribution 2.371 -0.857 -0.211 2.530 sum 0.934 22.503 12.161 25.596 Atomic orbital electron populations 1.21880 0.92971 1.01904 1.03108 1.20149 0.96928 0.99181 0.90883 0.88477 1.21575 0.93051 1.01764 0.98121 1.21697 0.99014 0.97167 0.96439 1.19927 0.83185 0.92764 0.95392 1.60334 1.57132 1.02568 1.07389 1.21809 0.97103 0.93332 0.95577 1.20536 0.83787 0.89231 0.82133 1.90560 1.38260 1.66152 1.54193 1.41989 1.41623 1.13683 1.25605 1.19008 1.25902 0.89984 1.10785 0.92348 1.26060 0.99995 0.96848 0.98147 1.69800 1.44984 1.14695 1.27710 0.85416 0.78312 0.78986 0.79150 1.17969 1.15858 1.19923 1.25038 0.93051 0.80009 0.72018 1.90667 1.65054 1.36546 1.49743 1.84600 1.32404 1.39272 1.76495 1.18977 0.98174 0.99944 0.92062 1.21499 1.00960 0.99415 0.93135 1.21317 0.96763 0.99026 0.97866 1.21514 0.96213 0.95861 0.99286 1.21529 1.00539 1.00951 0.91490 1.19838 0.93684 0.95366 0.96548 0.90873 0.91007 0.93746 0.91526 0.88970 0.89621 0.90186 0.82367 0.91689 0.86201 0.77602 0.91086 0.71213 0.86056 0.84147 0.83176 0.83229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.69 71.98 0.63 -1.46 16 2 C -0.05 -0.93 2.77 -11.65 -0.03 -0.96 16 3 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 4 C -0.11 -2.16 5.23 30.59 0.16 -2.00 16 5 C -0.11 -2.36 4.29 30.59 0.13 -2.23 16 6 C 0.18 4.64 0.47 1.92 0.00 4.64 16 7 N -0.64 -19.85 5.08 -482.16 -2.45 -22.29 16 8 C 0.05 1.72 5.38 85.56 0.46 2.18 16 9 C 0.46 20.62 7.81 87.66 0.68 21.30 16 10 O -0.61 -33.44 15.66 -3.07 -0.05 -33.49 16 11 N -0.59 -27.73 5.09 -306.98 -1.56 -29.29 16 12 C -0.33 -19.11 10.16 84.04 0.85 -18.26 16 13 H 0.06 4.05 7.39 -2.91 -0.02 4.03 16 14 C -0.01 -0.63 5.50 84.92 0.47 -0.17 16 15 N -0.93 -55.86 13.96 21.66 0.30 -55.56 16 16 Si 0.96 38.72 27.74 68.60 1.90 40.63 16 17 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 18 H -0.24 -8.07 6.51 99.48 0.65 -7.42 16 19 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 20 C 0.46 11.88 4.96 71.24 0.35 12.24 16 21 O -0.53 -15.63 16.68 21.96 0.37 -15.27 16 22 O -0.51 -11.42 10.76 -51.38 -0.55 -11.97 16 23 C -0.09 -2.26 4.95 -19.86 -0.10 -2.36 16 24 C -0.13 -3.15 8.83 22.36 0.20 -2.95 16 25 C -0.13 -2.59 10.05 22.20 0.22 -2.37 16 26 C -0.11 -1.87 10.05 22.20 0.22 -1.65 16 27 C -0.13 -2.24 9.04 22.36 0.20 -2.04 16 28 C -0.05 -1.15 5.43 -19.86 -0.11 -1.25 16 29 H 0.07 0.82 6.41 -2.39 -0.02 0.80 16 30 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 1.69 7.58 -2.39 -0.02 1.67 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.09 1.88 7.49 -2.39 -0.02 1.86 16 35 H 0.08 1.72 6.04 -2.39 -0.01 1.71 16 36 H 0.36 12.30 7.67 -89.69 -0.69 11.61 16 37 H 0.07 1.88 6.39 -2.38 -0.02 1.87 16 38 H 0.12 3.26 6.38 -2.39 -0.02 3.25 16 39 H 0.39 15.33 5.76 -92.71 -0.53 14.80 16 40 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 41 H 0.43 5.71 9.10 -74.06 -0.67 5.03 16 42 H 0.12 2.90 6.23 -2.91 -0.02 2.89 16 43 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 44 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 45 H 0.15 1.81 6.34 -2.91 -0.02 1.79 16 Total: -1.00 -78.65 359.05 1.42 -77.23 By element: Atomic # 1 Polarization: 48.24 SS G_CDS: -0.88 Total: 47.36 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 4.34 Total: 2.67 kcal Atomic # 7 Polarization: -103.44 SS G_CDS: -3.71 Total: -107.15 kcal Atomic # 8 Polarization: -60.50 SS G_CDS: -0.23 Total: -60.73 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 1.90 Total: 40.63 kcal Total: -78.65 1.42 -77.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594323995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.716 kcal (2) G-P(sol) polarization free energy of solvation -78.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds