Wall clock time and date at job start Tue Mar 31 2020 17:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.60859 * 2 1 4 4 C 1.53377 * 109.61162 * 120.33722 * 2 1 3 5 5 N 1.46969 * 108.63110 * 70.48884 * 4 2 1 6 6 C 1.34770 * 120.59598 * 235.20306 * 5 4 2 7 7 O 1.21527 * 119.99956 * 5.38147 * 6 5 4 8 8 C 1.48042 * 120.00047 * 185.38255 * 6 5 4 9 9 C 1.39562 * 119.99276 * 213.67332 * 8 6 5 10 10 C 1.37820 * 120.00170 * 180.25550 * 9 8 6 11 11 C 1.39603 * 119.99259 * 359.49276 * 10 9 8 12 12 C 1.47929 * 120.00136 * 180.25648 * 11 10 9 13 13 O 1.21443 * 119.99500 * 180.22923 * 12 11 10 14 14 O 1.34690 * 120.00300 * 0.23187 * 12 11 10 15 15 C 1.39596 * 119.98869 * 0.48560 * 11 10 9 16 16 C 1.37807 * 119.99817 * 359.77063 * 15 11 10 17 17 C 1.46965 * 118.80659 * 55.48628 * 5 4 2 18 18 C 1.53818 * 108.39669 * 304.47473 * 17 5 4 19 19 H 1.09000 * 109.74347 * 289.85127 * 18 17 5 20 20 C 1.53004 * 109.67203 * 169.39218 * 18 17 5 21 21 N 1.46959 * 109.75507 * 239.56906 * 2 1 3 22 22 C 1.36938 * 120.59725 * 115.37203 * 21 2 1 23 23 H 1.08003 * 119.99546 * 51.33847 * 22 21 2 24 24 C 1.38805 * 120.00347 * 231.34226 * 22 21 2 25 25 N 1.31623 * 119.99774 * 204.41362 * 24 22 21 26 26 Si 1.86803 * 120.00182 * 24.41146 * 24 22 21 27 27 H 1.48501 * 109.46836 * 95.46683 * 26 24 22 28 28 H 1.48497 * 109.47297 * 215.46729 * 26 24 22 29 29 H 1.48502 * 109.46927 * 335.46562 * 26 24 22 30 30 H 1.09006 * 109.46943 * 299.66191 * 1 2 3 31 31 H 1.09001 * 109.46884 * 59.66200 * 1 2 3 32 32 H 1.08998 * 109.47152 * 179.66099 * 1 2 3 33 33 H 1.08997 * 109.60594 * 310.75208 * 4 2 1 34 34 H 1.09000 * 109.61218 * 190.23927 * 4 2 1 35 35 H 1.07997 * 119.99792 * 359.97438 * 9 8 6 36 36 H 1.07992 * 120.00190 * 179.74698 * 10 9 8 37 37 H 0.96692 * 117.00229 * 180.02562 * 14 12 11 38 38 H 1.08006 * 119.99882 * 179.78642 * 15 11 10 39 39 H 1.07999 * 119.99826 * 179.97438 * 16 15 11 40 40 H 1.08995 * 109.61465 * 64.26077 * 17 5 4 41 41 H 1.09006 * 109.60343 * 184.77631 * 17 5 4 42 42 H 1.09004 * 109.46759 * 292.56861 * 20 18 17 43 43 H 1.08998 * 109.47081 * 52.56795 * 20 18 17 44 44 H 1.09001 * 109.47093 * 172.56583 * 20 18 17 45 45 H 0.97000 * 119.99745 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0448 -0.7297 1.2470 5 7 1.7642 -2.1649 1.1004 6 6 1.0646 -2.8269 2.0431 7 8 0.5759 -2.2196 2.9754 8 6 0.8913 -4.2937 1.9427 9 6 -0.2875 -4.8894 2.3937 10 6 -0.4468 -6.2555 2.3052 11 6 0.5667 -7.0421 1.7548 12 6 0.3935 -8.5078 1.6546 13 8 1.2769 -9.1925 1.1796 14 8 -0.7439 -9.0830 2.0901 15 6 1.7454 -6.4459 1.3035 16 6 1.9065 -5.0805 1.3969 17 6 2.2658 -2.8667 -0.0895 18 6 1.7462 -2.1357 -1.3392 19 1 0.6716 -2.2904 -1.4361 20 6 2.4566 -2.6733 -2.5831 21 7 2.0267 -0.7005 -1.1926 22 6 2.7377 -0.0280 -2.1504 23 1 3.5890 0.5736 -1.8681 24 6 2.3641 -0.1194 -3.4841 25 7 3.2524 0.0915 -4.4323 26 14 0.6009 -0.5419 -3.9335 27 1 -0.1593 0.7089 -4.1841 28 1 0.5897 -1.3817 -5.1581 29 1 -0.0295 -1.2887 -2.8154 30 1 -0.3633 0.5086 0.8931 31 1 -0.3633 0.5191 -0.8870 32 1 -0.3633 -1.0276 -0.0061 33 1 1.5362 -0.3461 2.1313 34 1 3.1194 -0.5750 1.3439 35 1 -1.0729 -4.2804 2.8161 36 1 -1.3573 -6.7169 2.6579 37 1 -0.8109 -10.0437 2.0041 38 1 2.5310 -7.0547 0.8808 39 1 2.8186 -4.6192 1.0481 40 1 3.3557 -2.8606 -0.0856 41 1 1.9031 -3.8946 -0.0879 42 1 3.5094 -2.3927 -2.5500 43 1 2.3708 -3.7596 -2.6094 44 1 1.9957 -2.2508 -3.4759 45 1 2.9915 0.0273 -5.3643 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594493558.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:45 Heat of formation + Delta-G solvation = -66.448929 kcal Electronic energy + Delta-G solvation = -29502.015923 eV Core-core repulsion = 25485.418137 eV Total energy + Delta-G solvation = -4016.597786 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.91382 -41.20794 -39.61079 -38.80889 -37.12485 -35.94692 -34.75837 -33.49440 -32.61002 -32.16869 -30.16519 -28.09970 -27.66721 -26.14431 -25.17027 -23.88926 -23.03738 -22.48201 -21.23036 -20.30764 -19.24198 -19.08129 -18.37095 -17.94991 -17.54190 -16.87427 -16.72548 -16.56063 -16.29008 -15.91246 -15.70715 -15.40900 -15.19200 -14.90172 -14.57930 -14.43484 -14.37536 -14.24103 -13.83086 -13.73118 -13.50529 -13.39045 -13.11813 -12.80950 -12.60760 -12.51031 -12.44174 -12.35286 -12.17679 -11.87512 -11.80535 -11.72575 -11.69784 -11.39160 -10.96102 -10.55149 -10.24010 -10.05650 -9.77742 -8.38799 -8.20720 -5.69673 -0.73863 0.21553 1.16410 1.32463 1.42720 1.50315 1.75119 1.93945 1.99412 2.41354 2.66436 3.03927 3.29619 3.31375 3.66434 3.80357 4.01064 4.02122 4.04365 4.14546 4.25828 4.33297 4.38894 4.44649 4.47891 4.59719 4.64413 4.72242 4.76366 4.84166 4.89874 4.93759 5.01756 5.03600 5.12027 5.12645 5.19192 5.22768 5.35934 5.49203 5.53654 5.60946 5.64350 5.98016 6.32507 6.37860 6.93063 7.00922 7.08553 7.61790 8.18887 8.96375 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015018 B = 0.003714 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.986518 B = 7536.901956 C = 8490.083510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.145 3.855 3 H 0.077 0.923 4 C 0.110 3.890 5 N -0.589 5.589 6 C 0.551 3.449 7 O -0.571 6.571 8 C -0.103 4.103 9 C -0.084 4.084 10 C -0.055 4.055 11 C -0.118 4.118 12 C 0.535 3.465 13 O -0.541 6.541 14 O -0.501 6.501 15 C -0.059 4.059 16 C -0.103 4.103 17 C 0.085 3.915 18 C 0.147 3.853 19 H 0.031 0.969 20 C -0.131 4.131 21 N -0.601 5.601 22 C -0.266 4.266 23 H 0.036 0.964 24 C 0.027 3.973 25 N -0.930 5.930 26 Si 0.912 3.088 27 H -0.309 1.309 28 H -0.300 1.300 29 H -0.241 1.241 30 H 0.066 0.934 31 H 0.035 0.965 32 H 0.037 0.963 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.144 0.856 36 H 0.168 0.832 37 H 0.436 0.564 38 H 0.154 0.846 39 H 0.159 0.841 40 H 0.084 0.916 41 H 0.118 0.882 42 H 0.057 0.943 43 H 0.078 0.922 44 H 0.031 0.969 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.236 -16.607 13.687 22.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.039 3.961 3 H 0.095 0.905 4 C -0.013 4.013 5 N -0.319 5.319 6 C 0.341 3.659 7 O -0.452 6.452 8 C -0.106 4.106 9 C -0.103 4.103 10 C -0.073 4.073 11 C -0.119 4.119 12 C 0.380 3.620 13 O -0.433 6.433 14 O -0.315 6.315 15 C -0.077 4.077 16 C -0.122 4.122 17 C -0.038 4.038 18 C 0.041 3.959 19 H 0.049 0.951 20 C -0.189 4.189 21 N -0.326 5.326 22 C -0.395 4.395 23 H 0.054 0.946 24 C -0.172 4.172 25 N -0.571 5.571 26 Si 0.741 3.259 27 H -0.238 1.238 28 H -0.227 1.227 29 H -0.164 1.164 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.161 0.839 36 H 0.186 0.814 37 H 0.298 0.702 38 H 0.172 0.828 39 H 0.176 0.824 40 H 0.102 0.898 41 H 0.135 0.865 42 H 0.076 0.924 43 H 0.096 0.904 44 H 0.049 0.951 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.161 -16.032 13.904 22.397 hybrid contribution -0.659 -0.117 -1.087 1.276 sum -7.820 -16.149 12.816 22.050 Atomic orbital electron populations 1.22064 0.97585 1.00427 1.00620 1.21184 0.92452 0.96010 0.86459 0.90511 1.22080 1.00747 0.79545 0.98945 1.47919 1.52811 1.10265 1.20903 1.18698 0.77754 0.87613 0.81852 1.90729 1.50057 1.69683 1.34748 1.20215 0.97106 0.92323 1.00924 1.21331 0.96508 0.95155 0.97314 1.21591 0.98850 0.92277 0.94546 1.19364 0.97285 0.89763 1.05528 1.20836 0.79205 0.88783 0.73135 1.90898 1.43467 1.65320 1.43633 1.84499 1.38530 1.31823 1.76674 1.21352 0.96443 0.94209 0.95745 1.21670 0.99705 0.93320 0.97461 1.23105 0.99995 0.97068 0.83670 1.21305 0.96446 0.84269 0.93850 0.95115 1.21831 1.01267 0.99667 0.96099 1.44410 1.63143 1.03595 1.21438 1.18262 1.06924 1.28018 0.86291 0.94603 1.26190 0.98725 0.96162 0.96147 1.70007 1.34657 1.52118 1.00331 0.86495 0.84647 0.76937 0.77835 1.23800 1.22699 1.16438 0.91496 0.94601 0.94350 0.89031 0.90928 0.83851 0.81413 0.70168 0.82794 0.82379 0.89815 0.86496 0.92439 0.90355 0.95079 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.22 9.15 71.98 0.66 -4.56 16 2 C 0.15 5.37 3.30 45.03 0.15 5.52 16 3 H 0.08 2.91 7.93 -2.39 -0.02 2.90 16 4 C 0.11 3.51 5.97 86.42 0.52 4.03 16 5 N -0.59 -17.68 2.61 -820.32 -2.14 -19.82 16 6 C 0.55 16.30 7.41 86.85 0.64 16.94 16 7 O -0.57 -20.00 16.20 -3.80 -0.06 -20.07 16 8 C -0.10 -2.39 5.38 -20.04 -0.11 -2.50 16 9 C -0.08 -1.67 9.59 22.49 0.22 -1.46 16 10 C -0.05 -0.86 9.60 22.50 0.22 -0.64 16 11 C -0.12 -2.05 5.88 -20.05 -0.12 -2.16 16 12 C 0.54 9.06 8.28 70.39 0.58 9.65 16 13 O -0.54 -12.40 17.12 20.02 0.34 -12.05 16 14 O -0.50 -5.05 12.67 -55.99 -0.71 -5.76 16 15 C -0.06 -1.06 9.58 22.50 0.22 -0.84 16 16 C -0.10 -2.00 7.34 22.49 0.16 -1.83 16 17 C 0.08 2.42 4.28 86.57 0.37 2.79 16 18 C 0.15 5.44 2.03 45.18 0.09 5.54 16 19 H 0.03 1.22 5.86 -2.39 -0.01 1.20 16 20 C -0.13 -5.01 7.67 71.98 0.55 -4.46 16 21 N -0.60 -25.58 1.96 -649.87 -1.27 -26.85 16 22 C -0.27 -13.75 8.69 84.03 0.73 -13.02 16 23 H 0.04 2.11 8.06 -2.91 -0.02 2.08 16 24 C 0.03 1.47 3.83 84.86 0.33 1.80 16 25 N -0.93 -53.98 13.97 21.65 0.30 -53.67 16 26 Si 0.91 43.70 24.95 68.60 1.71 45.41 16 27 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 28 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 29 H -0.24 -10.76 5.13 99.48 0.51 -10.25 16 30 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.04 1.38 7.02 -2.39 -0.02 1.36 16 33 H 0.09 2.85 6.96 -2.39 -0.02 2.84 16 34 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.14 2.76 7.97 -2.91 -0.02 2.74 16 36 H 0.17 1.78 7.60 -2.91 -0.02 1.76 16 37 H 0.44 0.54 9.11 -74.06 -0.67 -0.14 16 38 H 0.15 2.46 7.64 -2.91 -0.02 2.44 16 39 H 0.16 2.75 5.82 -2.91 -0.02 2.74 16 40 H 0.08 2.31 8.07 -2.39 -0.02 2.29 16 41 H 0.12 2.71 4.18 -2.38 -0.01 2.70 16 42 H 0.06 2.43 7.52 -2.39 -0.02 2.41 16 43 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.03 1.35 3.24 -2.39 -0.01 1.35 16 45 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -69.79 354.63 3.55 -66.23 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.17 Total: 11.79 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 5.21 Total: 14.79 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -3.11 Total: -100.34 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -0.43 Total: -37.88 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.71 Total: 45.41 kcal Total: -69.79 3.55 -66.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594493558.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.215 kcal (2) G-P(sol) polarization free energy of solvation -69.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds