Wall clock time and date at job start Tue Mar 31 2020 17:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.74743 * 2 1 4 4 C 1.53371 * 109.61291 * 239.56680 * 2 1 3 5 5 N 1.46968 * 108.63528 * 190.83044 * 4 2 1 6 6 C 1.34777 * 120.59323 * 235.20881 * 5 4 2 7 7 O 1.21524 * 119.99624 * 185.96338 * 6 5 4 8 8 C 1.48044 * 120.00168 * 5.95793 * 6 5 4 9 9 C 1.39557 * 119.99261 * 33.04165 * 8 6 5 10 10 C 1.37820 * 120.00207 * 179.71952 * 9 8 6 11 11 C 1.39592 * 119.99518 * 0.55475 * 10 9 8 12 12 C 1.47934 * 120.00752 * 179.70185 * 11 10 9 13 13 O 1.21440 * 120.00092 * 180.02562 * 12 11 10 14 14 O 1.34685 * 119.99660 * 0.02562 * 12 11 10 15 15 C 1.39603 * 119.99146 * 359.71462 * 11 10 9 16 16 C 1.37814 * 119.99419 * 0.02562 * 15 11 10 17 17 C 1.46958 * 118.81052 * 55.23311 * 5 4 2 18 18 C 1.53820 * 108.57894 * 304.64625 * 17 5 4 19 19 H 1.09005 * 109.75502 * 289.94745 * 18 17 5 20 20 C 1.52992 * 109.69522 * 169.29320 * 18 17 5 21 21 N 1.46955 * 108.39873 * 49.63577 * 18 17 5 22 22 C 1.36943 * 120.59390 * 124.76130 * 21 18 17 23 23 H 1.08001 * 119.99285 * 300.45691 * 22 21 18 24 24 C 1.38809 * 120.00075 * 120.45516 * 22 21 18 25 25 N 1.31618 * 119.99981 * 332.17211 * 24 22 21 26 26 Si 1.86798 * 119.99860 * 152.16807 * 24 22 21 27 27 H 1.48502 * 109.47047 * 180.02562 * 26 24 22 28 28 H 1.48505 * 109.47316 * 299.99950 * 26 24 22 29 29 H 1.48496 * 109.47238 * 59.99971 * 26 24 22 30 30 H 1.09002 * 109.47678 * 306.90878 * 1 2 3 31 31 H 1.09004 * 109.46955 * 66.91121 * 1 2 3 32 32 H 1.09001 * 109.47512 * 186.90485 * 1 2 3 33 33 H 1.08991 * 109.61386 * 310.57958 * 4 2 1 34 34 H 1.09006 * 109.60470 * 70.91795 * 4 2 1 35 35 H 1.08004 * 119.99865 * 359.97438 * 9 8 6 36 36 H 1.07995 * 120.00023 * 180.29189 * 10 9 8 37 37 H 0.96695 * 116.99844 * 179.97438 * 14 12 11 38 38 H 1.08000 * 120.00297 * 180.02562 * 15 11 10 39 39 H 1.08003 * 119.99984 * 180.02562 * 16 15 11 40 40 H 1.09000 * 109.61499 * 64.51287 * 17 5 4 41 41 H 1.09000 * 109.61002 * 184.85899 * 17 5 4 42 42 H 1.09003 * 109.46981 * 304.40300 * 20 18 17 43 43 H 1.09003 * 109.47554 * 64.40505 * 20 18 17 44 44 H 1.09000 * 109.46903 * 184.40538 * 20 18 17 45 45 H 0.97007 * 119.99886 * 175.05937 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 6 2.0448 -0.7318 -1.2457 5 7 3.4909 -0.9489 -1.0987 6 6 4.3493 -0.5133 -2.0420 7 8 5.5295 -0.7922 -1.9648 8 6 3.8543 0.3048 -3.1722 9 6 2.7869 1.1835 -2.9825 10 6 2.3298 1.9495 -4.0331 11 6 2.9269 1.8377 -5.2899 12 6 2.4321 2.6549 -6.4194 13 8 2.9514 2.5573 -7.5128 14 8 1.4057 3.5072 -6.2350 15 6 3.9910 0.9545 -5.4808 16 6 4.4514 0.1927 -4.4287 17 6 3.9840 -1.6500 0.0950 18 6 3.4696 -0.9134 1.3435 19 1 3.9729 0.0490 1.4370 20 6 3.7382 -1.7602 2.5891 21 7 2.0232 -0.7011 1.1938 22 6 1.1509 -1.1436 2.1523 23 1 1.1068 -2.1943 2.3984 24 6 0.3237 -0.2419 2.8074 25 7 0.6991 1.0115 2.9506 26 14 -1.3225 -0.8071 3.4857 27 1 -2.0101 0.3381 4.1344 28 1 -2.1634 -1.3250 2.3767 29 1 -1.1029 -1.8837 4.4847 30 1 -0.3634 0.6171 0.8217 31 1 -0.3633 0.4030 -0.9454 32 1 -0.3634 -1.0202 0.1235 33 1 1.5385 -1.6923 -1.3411 34 1 1.8513 -0.1267 -2.1315 35 1 2.3218 1.2664 -2.0113 36 1 1.5068 2.6329 -3.8851 37 1 1.1177 4.0201 -7.0025 38 1 4.4535 0.8682 -6.4530 39 1 5.2749 -0.4904 -4.5762 40 1 3.6157 -2.6759 0.0951 41 1 5.0740 -1.6526 0.0936 42 1 3.2889 -2.7452 2.4625 43 1 4.8137 -1.8668 2.7311 44 1 3.3033 -1.2718 3.4611 45 1 0.0920 1.6577 3.3441 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594493562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:51 Heat of formation + Delta-G solvation = -52.034356 kcal Electronic energy + Delta-G solvation = -29272.236130 eV Core-core repulsion = 25256.263407 eV Total energy + Delta-G solvation = -4015.972724 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.86205 -40.13972 -38.31894 -37.33373 -36.38029 -34.34687 -33.25455 -31.69801 -31.40938 -31.22429 -27.88635 -26.61783 -26.09867 -25.10241 -23.65780 -22.93082 -21.66891 -20.51545 -20.16094 -19.14074 -18.41080 -17.68958 -17.25282 -16.21258 -16.04117 -15.89440 -15.26688 -15.18788 -14.88920 -14.62051 -14.34731 -14.28809 -13.92999 -13.54914 -13.43321 -13.14340 -12.97531 -12.60249 -12.42043 -12.08619 -11.84741 -11.69059 -11.60025 -11.47200 -11.21349 -11.00593 -10.91646 -10.85594 -10.61655 -10.56757 -10.41161 -10.19956 -10.05004 -9.90840 -9.63510 -9.27746 -9.06672 -8.46467 -8.14791 -6.52138 -5.78750 -3.74290 0.19357 1.09767 2.08854 2.69087 2.94390 3.23838 3.25750 3.33565 3.37031 3.62775 4.34425 4.48674 4.54688 4.68290 4.85152 4.98217 5.06597 5.16723 5.17951 5.45343 5.60228 5.62395 5.75410 5.80535 5.93328 5.95165 5.99586 6.02041 6.10936 6.12975 6.18198 6.28738 6.36970 6.40809 6.46975 6.49751 6.53523 6.69501 6.84699 7.05834 7.16182 7.26523 7.33626 7.57908 7.72648 7.76302 8.34141 8.55631 9.06613 9.56640 10.39557 10.98775 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014819 B = 0.003555 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.074381 B = 7874.744420 C = 9408.379210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.175 3.825 3 H 0.032 0.968 4 C 0.059 3.941 5 N -0.585 5.585 6 C 0.547 3.453 7 O -0.546 6.546 8 C -0.083 4.083 9 C -0.109 4.109 10 C -0.067 4.067 11 C -0.116 4.116 12 C 0.529 3.471 13 O -0.515 6.515 14 O -0.509 6.509 15 C -0.063 4.063 16 C -0.080 4.080 17 C 0.099 3.901 18 C 0.156 3.844 19 H 0.030 0.970 20 C -0.125 4.125 21 N -0.573 5.573 22 C -0.281 4.281 23 H 0.051 0.949 24 C 0.052 3.948 25 N -0.858 5.858 26 Si 0.871 3.129 27 H -0.290 1.290 28 H -0.276 1.276 29 H -0.277 1.277 30 H 0.074 0.926 31 H 0.030 0.970 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.158 0.842 36 H 0.146 0.854 37 H 0.415 0.585 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.050 0.950 43 H 0.036 0.964 44 H 0.072 0.928 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.996 1.810 -13.865 14.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.068 3.932 3 H 0.049 0.951 4 C -0.065 4.065 5 N -0.315 5.315 6 C 0.335 3.665 7 O -0.426 6.426 8 C -0.086 4.086 9 C -0.127 4.127 10 C -0.085 4.085 11 C -0.117 4.117 12 C 0.374 3.626 13 O -0.404 6.404 14 O -0.321 6.321 15 C -0.081 4.081 16 C -0.099 4.099 17 C -0.024 4.024 18 C 0.050 3.950 19 H 0.048 0.952 20 C -0.183 4.183 21 N -0.297 5.297 22 C -0.410 4.410 23 H 0.068 0.932 24 C -0.153 4.153 25 N -0.494 5.494 26 Si 0.698 3.302 27 H -0.216 1.216 28 H -0.202 1.202 29 H -0.203 1.203 30 H 0.093 0.907 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.175 0.825 36 H 0.164 0.836 37 H 0.274 0.726 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.091 0.909 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.841 1.550 -13.580 13.792 hybrid contribution -1.262 0.277 -0.138 1.299 sum 0.579 1.827 -13.718 13.852 Atomic orbital electron populations 1.21808 0.94826 1.02779 0.99823 1.20691 0.93749 0.93579 0.85223 0.95081 1.23343 0.79351 1.02273 1.01511 1.47923 1.07450 1.55613 1.20508 1.18318 0.85933 0.80104 0.82178 1.90740 1.16344 1.58586 1.76908 1.20352 0.96126 0.97461 0.94684 1.21890 0.95009 0.94884 1.00939 1.21459 0.98824 0.97197 0.91011 1.19173 0.99933 1.00122 0.92484 1.20955 0.76738 0.77291 0.87663 1.90881 1.57145 1.65675 1.26728 1.84568 1.48797 1.52801 1.45929 1.21190 0.93981 0.93124 0.99808 1.21168 0.99154 0.98825 0.90737 1.22502 0.99416 0.95728 0.84788 1.20995 0.87327 0.95465 0.91229 0.95219 1.21615 0.98158 0.99827 0.98698 1.43916 0.99480 1.67528 1.18802 1.18449 1.16593 0.90799 1.15139 0.93162 1.25568 0.99581 0.95927 0.94235 1.70292 1.33609 1.03575 1.41927 0.86942 0.85599 0.78383 0.79301 1.21577 1.20179 1.20304 0.90728 0.95075 0.92142 0.91357 0.88935 0.82513 0.83640 0.72640 0.83959 0.83975 0.91755 0.90083 0.93122 0.94528 0.90945 0.93422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 7.97 37.15 0.30 -2.26 16 2 C 0.17 3.42 3.22 -67.48 -0.22 3.20 16 3 H 0.03 0.66 7.41 -51.93 -0.38 0.28 16 4 C 0.06 0.96 4.99 -3.59 -0.02 0.94 16 5 N -0.59 -10.16 2.95 -173.25 -0.51 -10.67 16 6 C 0.55 9.39 7.41 -12.24 -0.09 9.29 16 7 O -0.55 -10.77 16.21 5.34 0.09 -10.68 16 8 C -0.08 -1.17 5.46 -104.89 -0.57 -1.74 16 9 C -0.11 -1.37 7.38 -39.24 -0.29 -1.66 16 10 C -0.07 -0.72 9.60 -39.23 -0.38 -1.10 16 11 C -0.12 -1.28 5.88 -104.91 -0.62 -1.90 16 12 C 0.53 5.63 8.28 34.70 0.29 5.91 16 13 O -0.51 -6.69 17.12 -19.22 -0.33 -7.02 16 14 O -0.51 -3.93 12.67 -40.45 -0.51 -4.44 16 15 C -0.06 -0.69 9.58 -39.23 -0.38 -1.07 16 16 C -0.08 -0.98 9.59 -39.24 -0.38 -1.35 16 17 C 0.10 1.80 5.91 -3.37 -0.02 1.78 16 18 C 0.16 3.19 3.67 -67.26 -0.25 2.95 16 19 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 20 C -0.13 -2.38 8.23 37.15 0.31 -2.07 16 21 N -0.57 -12.70 2.72 -156.76 -0.43 -13.13 16 22 C -0.28 -6.80 6.18 -15.06 -0.09 -6.89 16 23 H 0.05 1.26 7.58 -52.49 -0.40 0.86 16 24 C 0.05 1.29 3.04 -17.43 -0.05 1.24 16 25 N -0.86 -22.57 13.16 55.49 0.73 -21.84 16 26 Si 0.87 19.36 29.49 -169.99 -5.01 14.35 16 27 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 28 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 29 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 30 H 0.07 1.63 5.65 -51.93 -0.29 1.34 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 1.19 7.60 -51.93 -0.39 0.80 16 33 H 0.07 1.12 8.12 -51.93 -0.42 0.70 16 34 H 0.09 1.28 3.57 -51.93 -0.19 1.10 16 35 H 0.16 2.08 4.73 -52.48 -0.25 1.83 16 36 H 0.15 1.31 7.60 -52.49 -0.40 0.92 16 37 H 0.41 1.30 9.11 45.56 0.42 1.71 16 38 H 0.14 1.39 7.64 -52.49 -0.40 0.99 16 39 H 0.14 1.63 7.97 -52.48 -0.42 1.21 16 40 H 0.06 1.14 8.12 -51.93 -0.42 0.72 16 41 H 0.08 1.47 7.02 -51.93 -0.36 1.10 16 42 H 0.05 0.94 7.77 -51.93 -0.40 0.54 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 1.56 7.55 -51.93 -0.39 1.16 16 45 H 0.26 6.55 8.32 -40.82 -0.34 6.21 16 LS Contribution 362.20 15.07 5.46 5.46 Total: -1.00 -30.30 362.20 -8.09 -38.39 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.11 Total: 4.33 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -2.46 Total: 5.26 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.21 Total: -45.64 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.75 Total: -22.14 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.01 Total: 14.35 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.30 -8.09 -38.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594493562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.648 kcal (2) G-P(sol) polarization free energy of solvation -30.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds