Wall clock time and date at job start Tue Mar 31 2020 17:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.74743 * 2 1 4 4 C 1.53371 * 109.61291 * 239.56680 * 2 1 3 5 5 N 1.46968 * 108.63528 * 190.83044 * 4 2 1 6 6 C 1.34777 * 120.59323 * 235.20881 * 5 4 2 7 7 O 1.21524 * 119.99624 * 185.96338 * 6 5 4 8 8 C 1.48044 * 120.00168 * 5.95793 * 6 5 4 9 9 C 1.39557 * 119.99261 * 33.04165 * 8 6 5 10 10 C 1.37820 * 120.00207 * 179.71952 * 9 8 6 11 11 C 1.39592 * 119.99518 * 0.55475 * 10 9 8 12 12 C 1.47934 * 120.00752 * 179.70185 * 11 10 9 13 13 O 1.21440 * 120.00092 * 180.02562 * 12 11 10 14 14 O 1.34685 * 119.99660 * 0.02562 * 12 11 10 15 15 C 1.39603 * 119.99146 * 359.71462 * 11 10 9 16 16 C 1.37814 * 119.99419 * 0.02562 * 15 11 10 17 17 C 1.46958 * 118.81052 * 55.23311 * 5 4 2 18 18 C 1.53820 * 108.57894 * 304.64625 * 17 5 4 19 19 H 1.09005 * 109.75502 * 289.94745 * 18 17 5 20 20 C 1.52992 * 109.69522 * 169.29320 * 18 17 5 21 21 N 1.46955 * 108.39873 * 49.63577 * 18 17 5 22 22 C 1.36943 * 120.59390 * 124.76130 * 21 18 17 23 23 H 1.08001 * 119.99285 * 300.45691 * 22 21 18 24 24 C 1.38809 * 120.00075 * 120.45516 * 22 21 18 25 25 N 1.31618 * 119.99981 * 332.17211 * 24 22 21 26 26 Si 1.86798 * 119.99860 * 152.16807 * 24 22 21 27 27 H 1.48502 * 109.47047 * 180.02562 * 26 24 22 28 28 H 1.48505 * 109.47316 * 299.99950 * 26 24 22 29 29 H 1.48496 * 109.47238 * 59.99971 * 26 24 22 30 30 H 1.09002 * 109.47678 * 306.90878 * 1 2 3 31 31 H 1.09004 * 109.46955 * 66.91121 * 1 2 3 32 32 H 1.09001 * 109.47512 * 186.90485 * 1 2 3 33 33 H 1.08991 * 109.61386 * 310.57958 * 4 2 1 34 34 H 1.09006 * 109.60470 * 70.91795 * 4 2 1 35 35 H 1.08004 * 119.99865 * 359.97438 * 9 8 6 36 36 H 1.07995 * 120.00023 * 180.29189 * 10 9 8 37 37 H 0.96695 * 116.99844 * 179.97438 * 14 12 11 38 38 H 1.08000 * 120.00297 * 180.02562 * 15 11 10 39 39 H 1.08003 * 119.99984 * 180.02562 * 16 15 11 40 40 H 1.09000 * 109.61499 * 64.51287 * 17 5 4 41 41 H 1.09000 * 109.61002 * 184.85899 * 17 5 4 42 42 H 1.09003 * 109.46981 * 304.40300 * 20 18 17 43 43 H 1.09003 * 109.47554 * 64.40505 * 20 18 17 44 44 H 1.09000 * 109.46903 * 184.40538 * 20 18 17 45 45 H 0.97007 * 119.99886 * 175.05937 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 6 2.0448 -0.7318 -1.2457 5 7 3.4909 -0.9489 -1.0987 6 6 4.3493 -0.5133 -2.0420 7 8 5.5295 -0.7922 -1.9648 8 6 3.8543 0.3048 -3.1722 9 6 2.7869 1.1835 -2.9825 10 6 2.3298 1.9495 -4.0331 11 6 2.9269 1.8377 -5.2899 12 6 2.4321 2.6549 -6.4194 13 8 2.9514 2.5573 -7.5128 14 8 1.4057 3.5072 -6.2350 15 6 3.9910 0.9545 -5.4808 16 6 4.4514 0.1927 -4.4287 17 6 3.9840 -1.6500 0.0950 18 6 3.4696 -0.9134 1.3435 19 1 3.9729 0.0490 1.4370 20 6 3.7382 -1.7602 2.5891 21 7 2.0232 -0.7011 1.1938 22 6 1.1509 -1.1436 2.1523 23 1 1.1068 -2.1943 2.3984 24 6 0.3237 -0.2419 2.8074 25 7 0.6991 1.0115 2.9506 26 14 -1.3225 -0.8071 3.4857 27 1 -2.0101 0.3381 4.1344 28 1 -2.1634 -1.3250 2.3767 29 1 -1.1029 -1.8837 4.4847 30 1 -0.3634 0.6171 0.8217 31 1 -0.3633 0.4030 -0.9454 32 1 -0.3634 -1.0202 0.1235 33 1 1.5385 -1.6923 -1.3411 34 1 1.8513 -0.1267 -2.1315 35 1 2.3218 1.2664 -2.0113 36 1 1.5068 2.6329 -3.8851 37 1 1.1177 4.0201 -7.0025 38 1 4.4535 0.8682 -6.4530 39 1 5.2749 -0.4904 -4.5762 40 1 3.6157 -2.6759 0.0951 41 1 5.0740 -1.6526 0.0936 42 1 3.2889 -2.7452 2.4625 43 1 4.8137 -1.8668 2.7311 44 1 3.3033 -1.2718 3.4611 45 1 0.0920 1.6577 3.3441 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594493562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:50 Heat of formation + Delta-G solvation = -70.451733 kcal Electronic energy + Delta-G solvation = -29273.034768 eV Core-core repulsion = 25256.263407 eV Total energy + Delta-G solvation = -4016.771361 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.91578 -41.17748 -39.45022 -38.79319 -37.12666 -35.90341 -34.78225 -33.24574 -32.66625 -32.20176 -29.55202 -27.98422 -27.55732 -26.43859 -25.10587 -23.89059 -22.62267 -22.07681 -21.59788 -20.60372 -19.19918 -18.62888 -18.51798 -17.77819 -17.45595 -16.70606 -16.69884 -16.53078 -16.39296 -15.91957 -15.69202 -15.49667 -15.21598 -14.90671 -14.53900 -14.46043 -14.21917 -13.81867 -13.62111 -13.43180 -13.37056 -13.15926 -12.94859 -12.67177 -12.59823 -12.49865 -12.34281 -12.28760 -12.10953 -12.08367 -11.82149 -11.73011 -11.66685 -11.54393 -10.97759 -10.28792 -10.21919 -10.06842 -9.71171 -8.39343 -7.60351 -5.65973 -0.76275 0.18992 1.13867 1.47379 1.52906 1.56733 1.79022 1.91452 1.99164 2.52184 2.63698 3.18566 3.31069 3.51916 3.63966 3.80444 4.00889 4.09054 4.12024 4.23053 4.31409 4.33334 4.48261 4.50421 4.52663 4.61336 4.75971 4.81676 4.83816 4.88780 4.95993 4.97917 5.04131 5.13008 5.17669 5.19465 5.38254 5.41654 5.53830 5.56224 5.59717 5.64727 5.73854 5.82372 6.37800 6.63479 6.93778 6.98673 7.27800 7.75530 8.55844 9.08891 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014819 B = 0.003555 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.074381 B = 7874.744420 C = 9408.379210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.173 3.827 3 H 0.011 0.989 4 C 0.072 3.928 5 N -0.591 5.591 6 C 0.547 3.453 7 O -0.577 6.577 8 C -0.100 4.100 9 C -0.113 4.113 10 C -0.054 4.054 11 C -0.116 4.116 12 C 0.537 3.463 13 O -0.541 6.541 14 O -0.500 6.500 15 C -0.056 4.056 16 C -0.078 4.078 17 C 0.110 3.890 18 C 0.153 3.847 19 H 0.001 0.999 20 C -0.115 4.115 21 N -0.588 5.588 22 C -0.276 4.276 23 H 0.042 0.958 24 C 0.021 3.979 25 N -0.893 5.893 26 Si 0.921 3.079 27 H -0.297 1.297 28 H -0.266 1.266 29 H -0.279 1.279 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.123 0.877 35 H 0.150 0.850 36 H 0.168 0.832 37 H 0.436 0.564 38 H 0.156 0.844 39 H 0.146 0.854 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.041 0.959 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.034 1.850 -16.107 16.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.066 3.934 3 H 0.029 0.971 4 C -0.051 4.051 5 N -0.320 5.320 6 C 0.336 3.664 7 O -0.459 6.459 8 C -0.103 4.103 9 C -0.131 4.131 10 C -0.072 4.072 11 C -0.117 4.117 12 C 0.383 3.617 13 O -0.433 6.433 14 O -0.314 6.314 15 C -0.074 4.074 16 C -0.097 4.097 17 C -0.014 4.014 18 C 0.046 3.954 19 H 0.019 0.981 20 C -0.173 4.173 21 N -0.313 5.313 22 C -0.406 4.406 23 H 0.059 0.941 24 C -0.182 4.182 25 N -0.532 5.532 26 Si 0.748 3.252 27 H -0.223 1.223 28 H -0.191 1.191 29 H -0.205 1.205 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.140 0.860 35 H 0.167 0.833 36 H 0.186 0.814 37 H 0.299 0.701 38 H 0.174 0.826 39 H 0.164 0.836 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.846 1.593 -15.845 15.947 hybrid contribution -0.930 0.345 0.504 1.113 sum -0.084 1.939 -15.341 15.463 Atomic orbital electron populations 1.21715 0.94244 1.01831 1.00776 1.20718 0.94290 0.92664 0.85704 0.97125 1.23223 0.78562 1.02467 1.00833 1.47989 1.08002 1.55641 1.20402 1.18789 0.85406 0.79603 0.82585 1.90714 1.17601 1.59786 1.77763 1.20174 0.97594 0.98353 0.94207 1.21773 0.94879 0.95295 1.01128 1.21607 0.98827 0.96567 0.90151 1.19348 0.99654 0.99845 0.92847 1.20767 0.76884 0.77249 0.86843 1.90884 1.58176 1.66618 1.27602 1.84517 1.47437 1.52231 1.47257 1.21326 0.93742 0.92415 0.99927 1.21214 0.99096 0.99061 0.90319 1.22242 0.99247 0.95693 0.84176 1.21030 0.86551 0.94681 0.93117 0.98136 1.21494 0.99754 0.99245 0.96762 1.44191 0.99901 1.67660 1.19539 1.18505 1.16540 0.90340 1.15231 0.94067 1.26017 1.01741 0.95838 0.94557 1.70375 1.34361 1.04551 1.43877 0.86146 0.82781 0.77465 0.78823 1.22298 1.19117 1.20510 0.93696 0.91135 0.92916 0.90929 0.85975 0.83272 0.81431 0.70123 0.82595 0.83598 0.90998 0.90146 0.92650 0.91880 0.93974 0.93875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 7.97 71.98 0.57 -4.16 16 2 C 0.17 6.71 3.22 45.02 0.15 6.85 16 3 H 0.01 0.47 7.41 -2.39 -0.02 0.45 16 4 C 0.07 2.25 4.99 86.41 0.43 2.68 16 5 N -0.59 -20.18 2.95 -820.33 -2.42 -22.60 16 6 C 0.55 18.44 7.41 86.85 0.64 19.08 16 7 O -0.58 -22.69 16.21 -3.79 -0.06 -22.75 16 8 C -0.10 -2.67 5.46 -20.04 -0.11 -2.78 16 9 C -0.11 -2.60 7.38 22.49 0.17 -2.43 16 10 C -0.05 -0.99 9.60 22.50 0.22 -0.78 16 11 C -0.12 -2.21 5.88 -20.05 -0.12 -2.33 16 12 C 0.54 9.74 8.28 70.39 0.58 10.32 16 13 O -0.54 -12.67 17.12 20.03 0.34 -12.33 16 14 O -0.50 -5.87 12.67 -55.95 -0.71 -6.57 16 15 C -0.06 -1.10 9.58 22.50 0.22 -0.88 16 16 C -0.08 -1.77 9.59 22.49 0.22 -1.56 16 17 C 0.11 3.98 5.91 86.57 0.51 4.49 16 18 C 0.15 6.35 3.67 45.18 0.17 6.52 16 19 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 20 C -0.11 -4.42 8.23 71.98 0.59 -3.82 16 21 N -0.59 -26.39 2.72 -649.88 -1.77 -28.16 16 22 C -0.28 -13.53 6.18 84.03 0.52 -13.01 16 23 H 0.04 2.09 7.58 -2.91 -0.02 2.07 16 24 C 0.02 1.04 3.04 84.86 0.26 1.30 16 25 N -0.89 -48.15 13.16 21.65 0.28 -47.86 16 26 Si 0.92 40.04 29.49 68.60 2.02 42.06 16 27 H -0.30 -13.14 7.11 99.48 0.71 -12.44 16 28 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 29 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 30 H 0.04 1.94 5.65 -2.39 -0.01 1.93 16 31 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.05 2.01 7.60 -2.39 -0.02 1.99 16 33 H 0.07 2.24 8.12 -2.39 -0.02 2.22 16 34 H 0.12 3.12 3.57 -2.39 -0.01 3.11 16 35 H 0.15 3.71 4.73 -2.91 -0.01 3.70 16 36 H 0.17 2.36 7.60 -2.91 -0.02 2.34 16 37 H 0.44 1.13 9.11 -74.06 -0.67 0.45 16 38 H 0.16 2.64 7.64 -2.91 -0.02 2.62 16 39 H 0.15 3.16 7.97 -2.91 -0.02 3.13 16 40 H 0.07 2.49 8.12 -2.39 -0.02 2.47 16 41 H 0.08 2.91 7.02 -2.39 -0.02 2.89 16 42 H 0.05 2.05 7.77 -2.39 -0.02 2.03 16 43 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.04 1.85 7.55 -2.39 -0.02 1.84 16 45 H 0.25 13.24 8.32 -92.70 -0.77 12.47 16 Total: -1.00 -66.24 362.20 3.07 -63.17 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.36 Total: 15.54 kcal Atomic # 6 Polarization: 14.50 SS G_CDS: 5.01 Total: 19.51 kcal Atomic # 7 Polarization: -94.72 SS G_CDS: -3.90 Total: -98.62 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -0.43 Total: -41.65 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.02 Total: 42.06 kcal Total: -66.24 3.07 -63.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594493562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.285 kcal (2) G-P(sol) polarization free energy of solvation -66.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds