Wall clock time and date at job start Tue Mar 31 2020 17:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.74687 * 2 1 4 4 C 1.53809 * 109.75965 * 239.37311 * 2 1 3 5 5 N 1.46970 * 108.57775 * 289.94549 * 4 2 1 6 6 C 1.34772 * 120.59225 * 124.67112 * 5 4 2 7 7 O 1.21527 * 120.00206 * 0.29223 * 6 5 4 8 8 C 1.48048 * 120.00145 * 180.29457 * 6 5 4 9 9 C 1.39550 * 119.98944 * 327.91434 * 8 6 5 10 10 C 1.37818 * 120.00274 * 179.72115 * 9 8 6 11 11 C 1.39601 * 119.99440 * 0.55095 * 10 9 8 12 12 C 1.47923 * 120.00642 * 179.69757 * 11 10 9 13 13 O 1.21446 * 120.00184 * 180.02562 * 12 11 10 14 14 O 1.34688 * 120.00305 * 0.02562 * 12 11 10 15 15 C 1.39597 * 119.98782 * 359.72430 * 11 10 9 16 16 C 1.37820 * 119.99655 * 359.97438 * 15 11 10 17 17 C 1.46964 * 118.81324 * 304.64995 * 5 4 2 18 18 C 1.53366 * 108.63532 * 55.22077 * 17 5 4 19 19 H 1.09007 * 109.60467 * 70.32300 * 18 17 5 20 20 C 1.52998 * 109.75180 * 190.74781 * 18 17 5 21 21 N 1.46960 * 109.60962 * 120.42472 * 2 1 3 22 22 C 1.36949 * 120.59486 * 244.54227 * 21 2 1 23 23 H 1.07995 * 120.00039 * 208.24254 * 22 21 2 24 24 C 1.38808 * 119.99547 * 28.51499 * 22 21 2 25 25 N 1.31617 * 120.00271 * 15.71520 * 24 22 21 26 26 Si 1.86803 * 119.99705 * 195.71222 * 24 22 21 27 27 H 1.48504 * 109.46854 * 90.00307 * 26 24 22 28 28 H 1.48493 * 109.47040 * 210.00103 * 26 24 22 29 29 H 1.48500 * 109.47265 * 330.00349 * 26 24 22 30 30 H 1.08992 * 109.46955 * 299.57560 * 1 2 3 31 31 H 1.09003 * 109.46563 * 59.57464 * 1 2 3 32 32 H 1.08997 * 109.46915 * 179.57368 * 1 2 3 33 33 H 1.09001 * 109.74256 * 170.16196 * 4 2 1 34 34 H 1.08997 * 109.67544 * 49.69514 * 4 2 1 35 35 H 1.08001 * 120.00117 * 359.97438 * 9 8 6 36 36 H 1.08007 * 120.00423 * 180.24943 * 10 9 8 37 37 H 0.96693 * 117.00275 * 179.97438 * 14 12 11 38 38 H 1.08005 * 120.00361 * 180.02562 * 15 11 10 39 39 H 1.07999 * 119.99484 * 180.02562 * 16 15 11 40 40 H 1.09004 * 109.60824 * 295.47845 * 17 5 4 41 41 H 1.09000 * 109.75220 * 175.05214 * 17 5 4 42 42 H 1.09006 * 109.47378 * 179.23582 * 20 18 17 43 43 H 1.09004 * 109.47157 * 299.23354 * 20 18 17 44 44 H 1.09001 * 109.47226 * 59.23184 * 20 18 17 45 45 H 0.97001 * 120.00247 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0501 -0.7374 -1.2456 5 7 1.7611 -2.1707 -1.0959 6 6 1.0612 -2.8314 -2.0392 7 8 0.6674 -2.2434 -3.0271 8 6 0.7719 -4.2737 -1.8719 9 6 1.6809 -5.0944 -1.2028 10 6 1.4092 -6.4359 -1.0419 11 6 0.2301 -6.9761 -1.5584 12 6 -0.0586 -8.4172 -1.3917 13 8 -1.0841 -8.8871 -1.8415 14 8 0.8160 -9.2084 -0.7411 15 6 -0.6762 -6.1560 -2.2328 16 6 -0.4071 -4.8132 -2.3880 17 6 2.2495 -2.8705 0.1006 18 6 1.7344 -2.1342 1.3434 19 1 0.6585 -2.2827 1.4368 20 6 2.4372 -2.6721 2.5914 21 7 2.0233 -0.7011 1.1937 22 6 2.7345 -0.0296 2.1523 23 1 3.4596 -0.5565 2.7548 24 6 2.5194 1.3269 2.3532 25 7 1.4427 1.9024 1.8615 26 14 3.7580 2.3356 3.3217 27 1 4.7788 2.8880 2.3954 28 1 3.0587 3.4504 4.0095 29 1 4.4210 1.4701 4.3299 30 1 -0.3633 0.5072 0.8937 31 1 -0.3632 0.5205 -0.8862 32 1 -0.3633 -1.0276 -0.0076 33 1 3.1259 -0.5890 -1.3390 34 1 1.5493 -0.3542 -2.1347 35 1 2.5953 -4.6774 -0.8074 36 1 2.1108 -7.0703 -0.5205 37 1 0.5837 -10.1433 -0.6569 38 1 -1.5887 -6.5735 -2.6322 39 1 -1.1085 -4.1787 -2.9094 40 1 3.3395 -2.8739 0.1030 41 1 1.8805 -3.8961 0.1038 42 1 2.0778 -2.1366 3.4702 43 1 2.2214 -3.7350 2.7003 44 1 3.5132 -2.5281 2.4930 45 1 1.2925 2.8504 2.0016 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594493564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:55 Heat of formation + Delta-G solvation = -43.993823 kcal Electronic energy + Delta-G solvation = -29303.219239 eV Core-core repulsion = 25287.595179 eV Total energy + Delta-G solvation = -4015.624060 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.89750 -40.16994 -38.38333 -37.30293 -36.41923 -34.30299 -32.93329 -31.99072 -31.46616 -30.84892 -28.02444 -26.56079 -26.30823 -24.80909 -23.79196 -23.01813 -21.74805 -21.00278 -20.02094 -18.86417 -18.42454 -17.65938 -17.27613 -16.34791 -15.94649 -15.84429 -15.21342 -15.18680 -14.95286 -14.67281 -14.17539 -14.11007 -13.86309 -13.52820 -13.42742 -13.15354 -13.02781 -12.60276 -12.44428 -12.04811 -11.90411 -11.77606 -11.66492 -11.34092 -11.15993 -11.03833 -10.97204 -10.76335 -10.66941 -10.63778 -10.18722 -10.09971 -9.84883 -9.74769 -9.51734 -9.29959 -9.06924 -8.55616 -8.26325 -6.70250 -5.85292 -3.31214 0.16944 1.05273 2.06871 2.64858 2.94835 3.25212 3.32584 3.39952 3.41099 3.64320 4.39492 4.46648 4.47899 4.62644 4.82984 4.98816 5.11218 5.14492 5.29443 5.38447 5.54970 5.57693 5.69697 5.79899 5.81430 5.94245 6.01382 6.07025 6.09424 6.14563 6.16411 6.20763 6.28843 6.42572 6.45593 6.58086 6.71081 6.82715 6.87105 6.97155 7.01019 7.53928 7.54397 7.60705 7.73364 7.81765 8.36197 8.39193 9.12700 9.74300 10.30550 11.21185 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020448 B = 0.003142 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.008117 B = 8908.350881 C = 9742.378893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.179 3.821 3 H 0.111 0.889 4 C 0.091 3.909 5 N -0.580 5.580 6 C 0.545 3.455 7 O -0.544 6.544 8 C -0.080 4.080 9 C -0.117 4.117 10 C -0.068 4.068 11 C -0.117 4.117 12 C 0.529 3.471 13 O -0.513 6.513 14 O -0.511 6.511 15 C -0.061 4.061 16 C -0.078 4.078 17 C 0.060 3.940 18 C 0.154 3.846 19 H 0.031 0.969 20 C -0.136 4.136 21 N -0.581 5.581 22 C -0.254 4.254 23 H 0.073 0.927 24 C 0.005 3.995 25 N -0.897 5.897 26 Si 0.902 3.098 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.280 1.280 30 H 0.074 0.926 31 H 0.029 0.971 32 H 0.020 0.980 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.157 0.843 36 H 0.145 0.855 37 H 0.415 0.585 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.066 0.934 43 H 0.041 0.959 44 H 0.056 0.944 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.600 -17.332 -4.503 17.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.072 3.928 3 H 0.128 0.872 4 C -0.032 4.032 5 N -0.310 5.310 6 C 0.332 3.668 7 O -0.424 6.424 8 C -0.083 4.083 9 C -0.135 4.135 10 C -0.086 4.086 11 C -0.118 4.118 12 C 0.373 3.627 13 O -0.403 6.403 14 O -0.322 6.322 15 C -0.079 4.079 16 C -0.097 4.097 17 C -0.064 4.064 18 C 0.046 3.954 19 H 0.049 0.951 20 C -0.194 4.194 21 N -0.304 5.304 22 C -0.383 4.383 23 H 0.090 0.910 24 C -0.194 4.194 25 N -0.542 5.542 26 Si 0.732 3.268 27 H -0.215 1.215 28 H -0.219 1.219 29 H -0.205 1.205 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.174 0.826 36 H 0.162 0.838 37 H 0.274 0.726 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.089 0.911 41 H 0.117 0.883 42 H 0.085 0.915 43 H 0.060 0.940 44 H 0.075 0.925 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.198 -16.516 -5.118 17.293 hybrid contribution 0.382 -0.007 0.663 0.766 sum 0.581 -16.524 -4.455 17.124 Atomic orbital electron populations 1.21963 0.98080 0.98458 1.01187 1.20874 0.92332 0.97125 0.82488 0.87176 1.22669 1.00197 0.78668 1.01667 1.47920 1.52187 1.11049 1.19864 1.18289 0.79026 0.86067 0.83417 1.90749 1.53083 1.68654 1.29886 1.20385 0.95759 0.94351 0.97791 1.21886 1.00904 0.93205 0.97481 1.21423 0.95530 0.94953 0.96715 1.19156 0.97958 0.89633 1.05061 1.20957 0.80285 0.87448 0.74014 1.90889 1.26679 1.75905 1.46806 1.84553 1.50464 1.26081 1.71142 1.21217 0.98587 0.92654 0.95411 1.21199 0.96312 0.94507 0.97701 1.23378 0.99393 0.97247 0.86419 1.20780 0.96524 0.86658 0.91446 0.95109 1.21770 1.00844 0.98237 0.98523 1.44211 1.62962 1.03049 1.20172 1.19196 1.13931 0.91660 1.13556 0.90971 1.25075 0.96513 0.98498 0.99355 1.69979 1.24477 1.11020 1.48674 0.86303 0.80851 0.80019 0.79612 1.21501 1.21859 1.20529 0.90685 0.95184 0.96042 0.91953 0.89976 0.82551 0.83764 0.72639 0.83920 0.83863 0.91090 0.88350 0.91511 0.94045 0.92480 0.93567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.95 37.16 0.33 -2.71 16 2 C 0.18 3.95 2.36 -67.26 -0.16 3.79 16 3 H 0.11 2.77 5.95 -51.93 -0.31 2.46 16 4 C 0.09 1.75 5.99 -3.36 -0.02 1.73 16 5 N -0.58 -9.99 2.59 -173.25 -0.45 -10.44 16 6 C 0.54 9.29 7.46 -12.24 -0.09 9.20 16 7 O -0.54 -10.88 16.15 5.34 0.09 -10.80 16 8 C -0.08 -1.08 5.53 -104.89 -0.58 -1.66 16 9 C -0.12 -1.28 7.42 -39.25 -0.29 -1.57 16 10 C -0.07 -0.65 9.60 -39.23 -0.38 -1.02 16 11 C -0.12 -1.22 5.88 -104.92 -0.62 -1.84 16 12 C 0.53 5.33 8.28 34.70 0.29 5.62 16 13 O -0.51 -6.52 17.12 -19.22 -0.33 -6.85 16 14 O -0.51 -3.53 12.67 -40.46 -0.51 -4.05 16 15 C -0.06 -0.66 9.58 -39.23 -0.38 -1.04 16 16 C -0.08 -0.97 9.58 -39.24 -0.38 -1.34 16 17 C 0.06 0.91 4.37 -3.60 -0.02 0.89 16 18 C 0.15 2.84 3.22 -67.49 -0.22 2.62 16 19 H 0.03 0.63 7.38 -51.92 -0.38 0.24 16 20 C -0.14 -2.21 7.95 37.16 0.30 -1.92 16 21 N -0.58 -13.00 2.68 -156.77 -0.42 -13.42 16 22 C -0.25 -6.24 8.60 -15.06 -0.13 -6.37 16 23 H 0.07 1.73 6.20 -52.49 -0.33 1.40 16 24 C 0.00 0.12 4.95 -17.43 -0.09 0.03 16 25 N -0.90 -24.03 10.07 55.49 0.56 -23.47 16 26 Si 0.90 20.47 29.58 -169.99 -5.03 15.44 16 27 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 30 H 0.07 1.85 7.23 -51.93 -0.38 1.48 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.02 0.45 7.00 -51.93 -0.36 0.09 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.08 1.61 6.97 -51.93 -0.36 1.25 16 35 H 0.16 1.54 5.32 -52.49 -0.28 1.26 16 36 H 0.14 1.05 7.60 -52.48 -0.40 0.65 16 37 H 0.41 1.02 9.11 45.56 0.42 1.43 16 38 H 0.14 1.40 7.64 -52.48 -0.40 1.00 16 39 H 0.14 1.73 7.94 -52.49 -0.42 1.32 16 40 H 0.07 1.04 8.12 -51.93 -0.42 0.61 16 41 H 0.10 1.23 3.54 -53.63 -0.19 1.05 16 42 H 0.07 1.22 7.67 -51.93 -0.40 0.82 16 43 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.92 7.37 -51.93 -0.38 0.54 16 45 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 359.69 15.07 5.42 5.42 Total: -1.00 -31.07 359.69 -8.09 -39.16 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.00 Total: 4.59 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -2.42 Total: 4.42 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: -0.31 Total: -47.33 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.76 Total: -21.69 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.44 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.07 -8.09 -39.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594493564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.830 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds