Wall clock time and date at job start Tue Mar 31 2020 17:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.74687 * 2 1 4 4 C 1.53809 * 109.75965 * 239.37311 * 2 1 3 5 5 N 1.46970 * 108.57775 * 289.94549 * 4 2 1 6 6 C 1.34772 * 120.59225 * 124.67112 * 5 4 2 7 7 O 1.21527 * 120.00206 * 0.29223 * 6 5 4 8 8 C 1.48048 * 120.00145 * 180.29457 * 6 5 4 9 9 C 1.39550 * 119.98944 * 327.91434 * 8 6 5 10 10 C 1.37818 * 120.00274 * 179.72115 * 9 8 6 11 11 C 1.39601 * 119.99440 * 0.55095 * 10 9 8 12 12 C 1.47923 * 120.00642 * 179.69757 * 11 10 9 13 13 O 1.21446 * 120.00184 * 180.02562 * 12 11 10 14 14 O 1.34688 * 120.00305 * 0.02562 * 12 11 10 15 15 C 1.39597 * 119.98782 * 359.72430 * 11 10 9 16 16 C 1.37820 * 119.99655 * 359.97438 * 15 11 10 17 17 C 1.46964 * 118.81324 * 304.64995 * 5 4 2 18 18 C 1.53366 * 108.63532 * 55.22077 * 17 5 4 19 19 H 1.09007 * 109.60467 * 70.32300 * 18 17 5 20 20 C 1.52998 * 109.75180 * 190.74781 * 18 17 5 21 21 N 1.46960 * 109.60962 * 120.42472 * 2 1 3 22 22 C 1.36949 * 120.59486 * 244.54227 * 21 2 1 23 23 H 1.07995 * 120.00039 * 208.24254 * 22 21 2 24 24 C 1.38808 * 119.99547 * 28.51499 * 22 21 2 25 25 N 1.31617 * 120.00271 * 15.71520 * 24 22 21 26 26 Si 1.86803 * 119.99705 * 195.71222 * 24 22 21 27 27 H 1.48504 * 109.46854 * 90.00307 * 26 24 22 28 28 H 1.48493 * 109.47040 * 210.00103 * 26 24 22 29 29 H 1.48500 * 109.47265 * 330.00349 * 26 24 22 30 30 H 1.08992 * 109.46955 * 299.57560 * 1 2 3 31 31 H 1.09003 * 109.46563 * 59.57464 * 1 2 3 32 32 H 1.08997 * 109.46915 * 179.57368 * 1 2 3 33 33 H 1.09001 * 109.74256 * 170.16196 * 4 2 1 34 34 H 1.08997 * 109.67544 * 49.69514 * 4 2 1 35 35 H 1.08001 * 120.00117 * 359.97438 * 9 8 6 36 36 H 1.08007 * 120.00423 * 180.24943 * 10 9 8 37 37 H 0.96693 * 117.00275 * 179.97438 * 14 12 11 38 38 H 1.08005 * 120.00361 * 180.02562 * 15 11 10 39 39 H 1.07999 * 119.99484 * 180.02562 * 16 15 11 40 40 H 1.09004 * 109.60824 * 295.47845 * 17 5 4 41 41 H 1.09000 * 109.75220 * 175.05214 * 17 5 4 42 42 H 1.09006 * 109.47378 * 179.23582 * 20 18 17 43 43 H 1.09004 * 109.47157 * 299.23354 * 20 18 17 44 44 H 1.09001 * 109.47226 * 59.23184 * 20 18 17 45 45 H 0.97001 * 120.00247 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0501 -0.7374 -1.2456 5 7 1.7611 -2.1707 -1.0959 6 6 1.0612 -2.8314 -2.0392 7 8 0.6674 -2.2434 -3.0271 8 6 0.7719 -4.2737 -1.8719 9 6 1.6809 -5.0944 -1.2028 10 6 1.4092 -6.4359 -1.0419 11 6 0.2301 -6.9761 -1.5584 12 6 -0.0586 -8.4172 -1.3917 13 8 -1.0841 -8.8871 -1.8415 14 8 0.8160 -9.2084 -0.7411 15 6 -0.6762 -6.1560 -2.2328 16 6 -0.4071 -4.8132 -2.3880 17 6 2.2495 -2.8705 0.1006 18 6 1.7344 -2.1342 1.3434 19 1 0.6585 -2.2827 1.4368 20 6 2.4372 -2.6721 2.5914 21 7 2.0233 -0.7011 1.1937 22 6 2.7345 -0.0296 2.1523 23 1 3.4596 -0.5565 2.7548 24 6 2.5194 1.3269 2.3532 25 7 1.4427 1.9024 1.8615 26 14 3.7580 2.3356 3.3217 27 1 4.7788 2.8880 2.3954 28 1 3.0587 3.4504 4.0095 29 1 4.4210 1.4701 4.3299 30 1 -0.3633 0.5072 0.8937 31 1 -0.3632 0.5205 -0.8862 32 1 -0.3633 -1.0276 -0.0076 33 1 3.1259 -0.5890 -1.3390 34 1 1.5493 -0.3542 -2.1347 35 1 2.5953 -4.6774 -0.8074 36 1 2.1108 -7.0703 -0.5205 37 1 0.5837 -10.1433 -0.6569 38 1 -1.5887 -6.5735 -2.6322 39 1 -1.1085 -4.1787 -2.9094 40 1 3.3395 -2.8739 0.1030 41 1 1.8805 -3.8961 0.1038 42 1 2.0778 -2.1366 3.4702 43 1 2.2214 -3.7350 2.7003 44 1 3.5132 -2.5281 2.4930 45 1 1.2925 2.8504 2.0016 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594493564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:54 Heat of formation + Delta-G solvation = -63.001126 kcal Electronic energy + Delta-G solvation = -29304.043457 eV Core-core repulsion = 25287.595179 eV Total energy + Delta-G solvation = -4016.448278 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.90791 -41.17219 -39.49206 -38.73220 -37.10601 -35.85021 -34.41669 -33.48613 -32.46234 -32.07821 -29.75870 -27.96455 -27.58855 -26.13597 -25.32530 -23.98107 -22.68073 -22.47096 -21.31187 -20.40872 -19.17621 -18.64167 -18.40074 -17.87550 -17.19379 -16.91724 -16.69643 -16.42257 -16.07424 -15.83035 -15.68971 -15.28565 -15.18759 -14.97480 -14.53345 -14.37387 -14.28594 -13.74925 -13.59496 -13.55585 -13.46174 -12.92419 -12.83615 -12.80386 -12.58712 -12.50522 -12.31610 -12.25976 -12.08608 -11.94288 -11.80957 -11.69731 -11.51171 -11.41727 -10.89129 -10.45703 -10.22582 -10.02322 -9.75029 -8.51024 -7.76771 -5.23889 -0.72754 0.21954 1.18021 1.50983 1.53846 1.60118 1.77643 1.97460 2.02849 2.56149 2.68627 3.33553 3.37682 3.54951 3.65668 3.82320 4.03379 4.12205 4.17127 4.22160 4.33741 4.35905 4.48761 4.56219 4.62858 4.67730 4.72049 4.80096 4.88238 4.90067 4.95752 5.02948 5.08380 5.16925 5.18170 5.20150 5.32326 5.44544 5.55861 5.59668 5.61518 5.72880 5.75340 5.85142 6.43926 6.47894 6.95229 7.05139 7.22869 7.92370 8.44678 9.27205 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020448 B = 0.003142 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.008117 B = 8908.350881 C = 9742.378893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.181 3.819 3 H 0.076 0.924 4 C 0.104 3.896 5 N -0.584 5.584 6 C 0.544 3.456 7 O -0.582 6.582 8 C -0.099 4.099 9 C -0.113 4.113 10 C -0.049 4.049 11 C -0.118 4.118 12 C 0.537 3.463 13 O -0.545 6.545 14 O -0.498 6.498 15 C -0.060 4.060 16 C -0.086 4.086 17 C 0.067 3.933 18 C 0.145 3.855 19 H 0.012 0.988 20 C -0.128 4.128 21 N -0.595 5.595 22 C -0.247 4.247 23 H 0.082 0.918 24 C -0.049 4.049 25 N -0.927 5.927 26 Si 0.958 3.042 27 H -0.291 1.291 28 H -0.305 1.305 29 H -0.268 1.268 30 H 0.043 0.957 31 H 0.032 0.968 32 H 0.023 0.977 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.174 0.826 36 H 0.178 0.822 37 H 0.436 0.564 38 H 0.150 0.850 39 H 0.135 0.865 40 H 0.087 0.913 41 H 0.134 0.866 42 H 0.040 0.960 43 H 0.083 0.917 44 H 0.060 0.940 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.303 -20.968 -3.842 21.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.073 3.927 3 H 0.094 0.906 4 C -0.021 4.021 5 N -0.313 5.313 6 C 0.333 3.667 7 O -0.464 6.464 8 C -0.102 4.102 9 C -0.130 4.130 10 C -0.067 4.067 11 C -0.120 4.120 12 C 0.382 3.618 13 O -0.437 6.437 14 O -0.312 6.312 15 C -0.078 4.078 16 C -0.105 4.105 17 C -0.055 4.055 18 C 0.039 3.961 19 H 0.030 0.970 20 C -0.186 4.186 21 N -0.318 5.318 22 C -0.377 4.377 23 H 0.099 0.901 24 C -0.245 4.245 25 N -0.574 5.574 26 Si 0.788 3.212 27 H -0.218 1.218 28 H -0.233 1.233 29 H -0.193 1.193 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.191 0.809 36 H 0.195 0.805 37 H 0.299 0.701 38 H 0.167 0.833 39 H 0.153 0.847 40 H 0.106 0.894 41 H 0.151 0.849 42 H 0.059 0.941 43 H 0.102 0.898 44 H 0.079 0.921 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.932 -20.224 -4.430 20.794 hybrid contribution -0.182 0.964 0.455 1.082 sum 1.750 -19.260 -3.975 19.744 Atomic orbital electron populations 1.21758 0.98524 0.97995 0.99671 1.20667 0.91851 0.96073 0.84087 0.90572 1.22287 1.00122 0.80109 0.99532 1.47946 1.52502 1.10139 1.20755 1.18834 0.77775 0.87496 0.82546 1.90723 1.54321 1.69945 1.31397 1.20176 0.97348 0.92356 1.00353 1.21993 1.00635 0.93567 0.96834 1.21705 0.95210 0.94423 0.95382 1.19353 0.98075 0.90115 1.04433 1.20802 0.79990 0.87412 0.73593 1.90893 1.28100 1.76428 1.48249 1.84493 1.49214 1.27608 1.69885 1.21267 0.99134 0.92010 0.95361 1.21166 0.96164 0.95147 0.98007 1.23487 1.00304 0.98081 0.83641 1.21038 0.96020 0.84695 0.94393 0.96985 1.21698 1.00488 1.00388 0.95980 1.44426 1.62897 1.04733 1.19785 1.19523 1.13503 0.91755 1.12933 0.90081 1.25716 0.97937 0.99765 1.01057 1.70145 1.26140 1.10435 1.50639 0.85406 0.78851 0.78438 0.78515 1.21840 1.23258 1.19261 0.93815 0.94909 0.95773 0.91434 0.90855 0.80906 0.80489 0.70145 0.83279 0.84683 0.89447 0.84882 0.94091 0.89819 0.92130 0.94597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 8.95 71.98 0.64 -4.88 16 2 C 0.18 8.20 2.36 45.18 0.11 8.30 16 3 H 0.08 4.01 5.95 -2.39 -0.01 4.00 16 4 C 0.10 4.01 5.99 86.56 0.52 4.53 16 5 N -0.58 -19.44 2.59 -820.34 -2.13 -21.57 16 6 C 0.54 18.14 7.46 86.85 0.65 18.78 16 7 O -0.58 -23.56 16.15 -3.80 -0.06 -23.62 16 8 C -0.10 -2.50 5.53 -20.04 -0.11 -2.61 16 9 C -0.11 -2.01 7.42 22.49 0.17 -1.84 16 10 C -0.05 -0.70 9.60 22.50 0.22 -0.48 16 11 C -0.12 -2.06 5.88 -20.05 -0.12 -2.18 16 12 C 0.54 8.96 8.28 70.39 0.58 9.54 16 13 O -0.54 -12.55 17.12 20.01 0.34 -12.21 16 14 O -0.50 -4.62 12.67 -55.97 -0.71 -5.33 16 15 C -0.06 -1.18 9.58 22.50 0.22 -0.97 16 16 C -0.09 -2.03 9.58 22.49 0.22 -1.81 16 17 C 0.07 1.85 4.37 86.41 0.38 2.23 16 18 C 0.14 5.12 3.22 45.03 0.14 5.27 16 19 H 0.01 0.49 7.38 -2.38 -0.02 0.47 16 20 C -0.13 -3.79 7.95 71.98 0.57 -3.22 16 21 N -0.60 -26.62 2.68 -649.89 -1.74 -28.36 16 22 C -0.25 -12.12 8.60 84.03 0.72 -11.39 16 23 H 0.08 3.78 6.20 -2.91 -0.02 3.76 16 24 C -0.05 -2.57 4.95 84.86 0.42 -2.15 16 25 N -0.93 -51.67 10.07 21.65 0.22 -51.46 16 26 Si 0.96 42.73 29.58 68.60 2.03 44.76 16 27 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 28 H -0.31 -14.15 7.11 99.48 0.71 -13.44 16 29 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 30 H 0.04 2.26 7.23 -2.39 -0.02 2.24 16 31 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.02 1.04 7.00 -2.39 -0.02 1.03 16 33 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.07 2.96 6.97 -2.39 -0.02 2.94 16 35 H 0.17 2.52 5.32 -2.91 -0.02 2.50 16 36 H 0.18 1.41 7.60 -2.91 -0.02 1.39 16 37 H 0.44 0.26 9.11 -74.06 -0.67 -0.42 16 38 H 0.15 2.73 7.64 -2.91 -0.02 2.71 16 39 H 0.14 3.32 7.94 -2.91 -0.02 3.30 16 40 H 0.09 2.19 8.12 -2.38 -0.02 2.17 16 41 H 0.13 2.76 3.54 -3.99 -0.01 2.75 16 42 H 0.04 1.42 7.67 -2.38 -0.02 1.40 16 43 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.06 1.76 7.37 -2.39 -0.02 1.74 16 45 H 0.24 13.55 8.31 -92.71 -0.77 12.78 16 Total: -1.00 -70.20 359.69 3.63 -66.56 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.36 Total: 14.10 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: 5.32 Total: 17.12 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -3.65 Total: -101.39 kcal Atomic # 8 Polarization: -40.72 SS G_CDS: -0.43 Total: -41.15 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -70.20 3.63 -66.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594493564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.563 kcal (2) G-P(sol) polarization free energy of solvation -70.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds