Wall clock time and date at job start Tue Mar 31 2020 17:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.63972 * 2 1 4 4 C 1.54326 * 110.71616 * 236.85962 * 2 1 3 5 5 N 1.47019 * 107.27000 * 219.26520 * 4 2 1 6 6 C 1.34778 * 125.65025 * 178.97908 * 5 4 2 7 7 O 1.21575 * 120.00171 * 179.97438 * 6 5 4 8 8 N 1.34783 * 119.99562 * 359.97254 * 6 5 4 9 9 C 1.39243 * 119.99880 * 176.69072 * 8 6 5 10 10 C 1.39476 * 119.83789 * 217.52268 * 9 8 6 11 11 C 1.36372 * 120.17028 * 179.76449 * 10 9 8 12 12 C 1.40865 * 119.82883 * 0.50638 * 11 10 9 13 13 C 1.41153 * 120.16687 * 179.72189 * 12 11 10 14 14 H 1.07999 * 120.00031 * 157.96842 * 13 12 11 15 15 C 1.39898 * 120.00062 * 337.96848 * 13 12 11 16 16 N 1.30888 * 119.99729 * 327.60253 * 15 13 12 17 17 Si 1.86793 * 120.00357 * 147.59709 * 15 13 12 18 18 H 1.48500 * 109.47145 * 94.98620 * 17 15 13 19 19 H 1.48497 * 109.47421 * 214.99053 * 17 15 13 20 20 H 1.48502 * 109.47035 * 334.99019 * 17 15 13 21 21 C 1.40878 * 119.67243 * 359.74614 * 12 11 10 22 22 C 1.36370 * 119.82390 * 359.97438 * 21 12 11 23 23 C 1.47420 * 108.70414 * 358.93980 * 5 4 2 24 24 C 1.54915 * 104.83103 * 24.12990 * 23 5 4 25 25 H 1.08994 * 111.00070 * 81.06385 * 24 23 5 26 26 C 1.53001 * 111.00234 * 204.91376 * 24 23 5 27 27 C 1.50700 * 109.47314 * 287.19299 * 26 24 23 28 28 O 1.20822 * 119.99794 * 0.02562 * 27 26 24 29 29 O 1.34229 * 119.99902 * 179.97438 * 27 26 24 30 30 H 1.08998 * 109.47224 * 179.30050 * 1 2 3 31 31 H 1.09003 * 109.46665 * 299.29746 * 1 2 3 32 32 H 1.08998 * 109.47680 * 59.29435 * 1 2 3 33 33 H 1.08997 * 109.88575 * 338.68272 * 4 2 1 34 34 H 1.09001 * 109.87946 * 99.69347 * 4 2 1 35 35 H 0.97001 * 120.00157 * 356.69660 * 8 6 5 36 36 H 1.08001 * 119.91189 * 0.02562 * 10 9 8 37 37 H 1.08004 * 120.08567 * 180.25370 * 11 10 9 38 38 H 0.97001 * 119.99645 * 180.02562 * 16 15 13 39 39 H 1.07999 * 120.08525 * 179.97438 * 21 12 11 40 40 H 1.08002 * 119.91443 * 179.97438 * 22 21 12 41 41 H 1.09000 * 110.36710 * 142.96656 * 23 5 4 42 42 H 1.09000 * 110.36854 * 265.18293 * 23 5 4 43 43 H 1.09001 * 109.47415 * 47.20248 * 26 24 23 44 44 H 1.09003 * 109.47291 * 167.19367 * 26 24 23 45 45 H 0.96696 * 116.99920 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0759 -0.7891 -1.2087 5 7 3.2470 -1.5461 -0.7428 6 6 3.9956 -2.3767 -1.4953 7 8 4.9462 -2.9528 -1.0026 8 7 3.6904 -2.5687 -2.7940 9 6 4.5035 -3.3724 -3.5888 10 6 4.7384 -3.0222 -4.9183 11 6 5.5375 -3.8018 -5.7015 12 6 6.1178 -4.9690 -5.1676 13 6 6.9414 -5.7843 -5.9735 14 1 7.6563 -6.4509 -5.5144 15 6 6.8314 -5.7288 -7.3671 16 7 5.6724 -5.4816 -7.9227 17 14 8.3387 -6.0072 -8.4347 18 1 8.3947 -7.4318 -8.8501 19 1 8.2584 -5.1430 -9.6396 20 1 9.5614 -5.6682 -7.6631 21 6 5.8717 -5.3190 -3.8253 22 6 5.0750 -4.5264 -3.0529 23 6 3.4674 -1.2455 0.6835 24 6 2.0828 -0.7949 1.2123 25 1 1.4515 -1.6546 1.4365 26 6 2.2315 0.1082 2.4385 27 6 2.6520 -0.7207 3.6248 28 8 2.8164 -1.9113 3.5020 29 8 2.8449 -0.1359 4.8175 30 1 -0.3633 -1.0276 -0.0125 31 1 -0.3633 0.5029 0.8963 32 1 -0.3634 0.5247 -0.8835 33 1 1.3140 -1.4754 -1.5782 34 1 2.3685 -0.0992 -2.0002 35 1 2.9043 -2.1470 -3.1749 36 1 4.2895 -2.1291 -5.3273 37 1 5.7217 -3.5271 -6.7297 38 1 5.5962 -5.4435 -8.8890 39 1 6.3129 -6.2127 -3.4093 40 1 4.8850 -4.7936 -2.0238 41 1 3.8031 -2.1379 1.2118 42 1 4.1969 -0.4432 0.7938 43 1 2.9869 0.8686 2.2403 44 1 1.2777 0.5907 2.6522 45 1 3.1145 -0.7084 5.5486 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599859491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:08 Heat of formation + Delta-G solvation = -102.093630 kcal Electronic energy + Delta-G solvation = -27747.122961 eV Core-core repulsion = 23728.979504 eV Total energy + Delta-G solvation = -4018.143457 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.85826 -40.04254 -38.47528 -37.04260 -36.41046 -34.37897 -33.57990 -32.75728 -31.89923 -29.51692 -29.04755 -27.54761 -26.54652 -24.80573 -23.28433 -21.62872 -21.26718 -20.68147 -20.31790 -19.39597 -18.35378 -17.80766 -17.25558 -17.12210 -16.44908 -16.17168 -15.83744 -15.14986 -14.89446 -14.51843 -14.25272 -13.93259 -13.90801 -13.49088 -13.35286 -12.94084 -12.83787 -12.68591 -12.48455 -12.32408 -12.05185 -11.99708 -11.92874 -11.83547 -11.36363 -11.32319 -11.17974 -11.10157 -10.99204 -10.88796 -10.70240 -10.47503 -10.13096 -9.67448 -9.52998 -9.07665 -8.65442 -8.47101 -7.47850 -7.06662 -6.81551 -4.20579 1.88278 2.62828 2.70634 2.93322 3.07632 3.09342 3.16691 3.23951 3.73487 3.93659 4.03268 4.15157 4.33759 4.50908 4.57274 4.65454 4.79553 4.94471 5.01356 5.13292 5.19804 5.23561 5.29587 5.51897 5.55054 5.67101 5.73271 5.80452 5.90390 5.99433 6.18286 6.23413 6.31167 6.50354 6.84586 7.00025 7.06504 7.17977 7.34306 7.39011 7.55177 7.66046 7.93673 8.00834 8.09645 8.33054 8.53273 8.62003 8.90457 8.97681 9.19888 10.07975 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026896 B = 0.002162 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.806050 B =12948.789711 C =13696.545830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.089 0.911 4 C 0.103 3.897 5 N -0.642 5.642 6 C 0.713 3.287 7 O -0.575 6.575 8 N -0.662 5.662 9 C -0.001 4.001 10 C -0.104 4.104 11 C -0.171 4.171 12 C 0.111 3.889 13 C -0.467 4.467 14 H 0.081 0.919 15 C 0.088 3.912 16 N -0.772 5.772 17 Si 0.895 3.105 18 H -0.270 1.270 19 H -0.275 1.275 20 H -0.258 1.258 21 C -0.222 4.222 22 C -0.066 4.066 23 C 0.132 3.868 24 C -0.091 4.091 25 H 0.098 0.902 26 C -0.101 4.101 27 C 0.474 3.526 28 O -0.505 6.505 29 O -0.521 6.521 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.389 0.611 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.282 0.718 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.060 0.940 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.886 15.068 15.836 24.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.108 0.892 4 C -0.020 4.020 5 N -0.382 5.382 6 C 0.416 3.584 7 O -0.452 6.452 8 N -0.308 5.308 9 C -0.093 4.093 10 C -0.125 4.125 11 C -0.190 4.190 12 C 0.108 3.892 13 C -0.495 4.495 14 H 0.099 0.901 15 C -0.133 4.133 16 N -0.395 5.395 17 Si 0.718 3.282 18 H -0.195 1.195 19 H -0.199 1.199 20 H -0.181 1.181 21 C -0.242 4.242 22 C -0.087 4.087 23 C 0.008 3.992 24 C -0.110 4.110 25 H 0.116 0.884 26 C -0.139 4.139 27 C 0.315 3.685 28 O -0.392 6.392 29 O -0.333 6.333 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.222 0.778 36 H 0.106 0.894 37 H 0.125 0.875 38 H 0.093 0.907 39 H 0.112 0.888 40 H 0.121 0.879 41 H 0.104 0.896 42 H 0.078 0.922 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -11.329 14.512 15.549 24.098 hybrid contribution 0.330 -0.201 -0.328 0.506 sum -10.999 14.312 15.221 23.611 Atomic orbital electron populations 1.21790 0.93500 1.02593 1.02259 1.22228 0.96445 0.99359 0.93404 0.89249 1.22038 0.88308 0.94813 0.96875 1.47502 1.31692 1.47907 1.11082 1.15536 0.81917 0.79509 0.81487 1.90916 1.30200 1.52155 1.71908 1.42051 1.28767 1.51899 1.08112 1.16867 1.06437 0.95152 0.90872 1.20137 1.00507 0.98859 0.92948 1.20594 1.02994 0.96269 0.99187 1.17587 0.89325 0.90959 0.91280 1.19479 1.18390 1.21159 0.90454 0.90082 1.25928 0.96220 0.92112 0.99052 1.69962 1.24134 1.32501 1.12884 0.86526 0.83347 0.78987 0.79293 1.19522 1.19948 1.18132 1.20605 1.06500 1.01257 0.95853 1.20342 0.97624 0.92433 0.98254 1.22057 0.95147 1.01424 0.80537 1.22339 0.98040 0.98316 0.92308 0.88352 1.21318 1.04846 0.98377 0.89395 1.23517 0.73567 0.87410 0.83966 1.90792 1.46822 1.16924 1.84651 1.84517 1.81135 1.46931 1.20765 0.92060 0.92091 0.91912 0.91522 0.91537 0.77754 0.89402 0.87498 0.90713 0.88775 0.87888 0.89579 0.92188 0.87123 0.87023 0.73020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 9.15 37.16 0.34 -0.39 16 2 C -0.10 -0.63 3.01 -88.79 -0.27 -0.90 16 3 H 0.09 0.47 8.04 -51.93 -0.42 0.05 16 4 C 0.10 1.01 5.75 -3.06 -0.02 0.99 16 5 N -0.64 -9.28 3.33 -176.24 -0.59 -9.86 16 6 C 0.71 14.01 8.30 -86.91 -0.72 13.29 16 7 O -0.58 -13.86 14.21 5.30 0.08 -13.79 16 8 N -0.66 -12.76 5.26 -14.10 -0.07 -12.84 16 9 C 0.00 -0.02 6.25 -83.57 -0.52 -0.54 16 10 C -0.10 -2.46 9.90 -39.79 -0.39 -2.86 16 11 C -0.17 -4.47 8.74 -39.26 -0.34 -4.82 16 12 C 0.11 3.06 5.57 -106.80 -0.60 2.47 16 13 C -0.47 -12.64 8.94 -37.86 -0.34 -12.98 16 14 H 0.08 2.13 8.02 -52.49 -0.42 1.71 16 15 C 0.09 2.22 4.77 -17.33 -0.08 2.14 16 16 N -0.77 -19.83 11.78 55.55 0.65 -19.17 16 17 Si 0.89 18.59 29.66 -169.99 -5.04 13.55 16 18 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 20 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 21 C -0.22 -5.90 9.74 -39.26 -0.38 -6.28 16 22 C -0.07 -1.69 8.59 -39.79 -0.34 -2.04 16 23 C 0.13 1.65 5.88 -2.53 -0.01 1.63 16 24 C -0.09 -0.74 2.03 -88.47 -0.18 -0.92 16 25 H 0.10 0.94 7.78 -51.93 -0.40 0.53 16 26 C -0.10 -0.57 5.33 -27.88 -0.15 -0.72 16 27 C 0.47 3.87 8.18 36.01 0.29 4.17 16 28 O -0.50 -6.19 15.71 -18.75 -0.29 -6.48 16 29 O -0.52 -3.13 13.42 -39.25 -0.53 -3.66 16 30 H 0.06 0.36 8.12 -51.93 -0.42 -0.06 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.62 7.79 -51.93 -0.40 0.22 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.39 6.09 7.81 -40.82 -0.32 5.77 16 36 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.11 2.82 6.53 -52.48 -0.34 2.48 16 38 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 39 H 0.09 2.38 8.06 -52.49 -0.42 1.96 16 40 H 0.10 2.64 6.45 -52.49 -0.34 2.30 16 41 H 0.09 1.34 7.39 -51.93 -0.38 0.96 16 42 H 0.06 0.70 7.91 -51.93 -0.41 0.29 16 43 H 0.11 0.48 7.97 -51.93 -0.41 0.06 16 44 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.41 1.03 9.10 45.56 0.41 1.45 16 LS Contribution 374.69 15.07 5.65 5.65 Total: -1.00 -35.12 374.69 -9.39 -44.52 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -5.53 Total: 9.85 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -3.71 Total: -7.76 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: -0.01 Total: -41.87 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.75 Total: -23.93 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.04 Total: 13.55 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.12 -9.39 -44.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599859491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.577 kcal (2) G-P(sol) polarization free energy of solvation -35.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds