Wall clock time and date at job start Tue Mar 31 2020 17:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.63972 * 2 1 4 4 C 1.54326 * 110.71616 * 236.85962 * 2 1 3 5 5 N 1.47019 * 107.27000 * 219.26520 * 4 2 1 6 6 C 1.34778 * 125.65025 * 178.97908 * 5 4 2 7 7 O 1.21575 * 120.00171 * 179.97438 * 6 5 4 8 8 N 1.34783 * 119.99562 * 359.97254 * 6 5 4 9 9 C 1.39243 * 119.99880 * 176.69072 * 8 6 5 10 10 C 1.39476 * 119.83789 * 217.52268 * 9 8 6 11 11 C 1.36372 * 120.17028 * 179.76449 * 10 9 8 12 12 C 1.40865 * 119.82883 * 0.50638 * 11 10 9 13 13 C 1.41153 * 120.16687 * 179.72189 * 12 11 10 14 14 H 1.07999 * 120.00031 * 157.96842 * 13 12 11 15 15 C 1.39898 * 120.00062 * 337.96848 * 13 12 11 16 16 N 1.30888 * 119.99729 * 327.60253 * 15 13 12 17 17 Si 1.86793 * 120.00357 * 147.59709 * 15 13 12 18 18 H 1.48500 * 109.47145 * 94.98620 * 17 15 13 19 19 H 1.48497 * 109.47421 * 214.99053 * 17 15 13 20 20 H 1.48502 * 109.47035 * 334.99019 * 17 15 13 21 21 C 1.40878 * 119.67243 * 359.74614 * 12 11 10 22 22 C 1.36370 * 119.82390 * 359.97438 * 21 12 11 23 23 C 1.47420 * 108.70414 * 358.93980 * 5 4 2 24 24 C 1.54915 * 104.83103 * 24.12990 * 23 5 4 25 25 H 1.08994 * 111.00070 * 81.06385 * 24 23 5 26 26 C 1.53001 * 111.00234 * 204.91376 * 24 23 5 27 27 C 1.50700 * 109.47314 * 287.19299 * 26 24 23 28 28 O 1.20822 * 119.99794 * 0.02562 * 27 26 24 29 29 O 1.34229 * 119.99902 * 179.97438 * 27 26 24 30 30 H 1.08998 * 109.47224 * 179.30050 * 1 2 3 31 31 H 1.09003 * 109.46665 * 299.29746 * 1 2 3 32 32 H 1.08998 * 109.47680 * 59.29435 * 1 2 3 33 33 H 1.08997 * 109.88575 * 338.68272 * 4 2 1 34 34 H 1.09001 * 109.87946 * 99.69347 * 4 2 1 35 35 H 0.97001 * 120.00157 * 356.69660 * 8 6 5 36 36 H 1.08001 * 119.91189 * 0.02562 * 10 9 8 37 37 H 1.08004 * 120.08567 * 180.25370 * 11 10 9 38 38 H 0.97001 * 119.99645 * 180.02562 * 16 15 13 39 39 H 1.07999 * 120.08525 * 179.97438 * 21 12 11 40 40 H 1.08002 * 119.91443 * 179.97438 * 22 21 12 41 41 H 1.09000 * 110.36710 * 142.96656 * 23 5 4 42 42 H 1.09000 * 110.36854 * 265.18293 * 23 5 4 43 43 H 1.09001 * 109.47415 * 47.20248 * 26 24 23 44 44 H 1.09003 * 109.47291 * 167.19367 * 26 24 23 45 45 H 0.96696 * 116.99920 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0759 -0.7891 -1.2087 5 7 3.2470 -1.5461 -0.7428 6 6 3.9956 -2.3767 -1.4953 7 8 4.9462 -2.9528 -1.0026 8 7 3.6904 -2.5687 -2.7940 9 6 4.5035 -3.3724 -3.5888 10 6 4.7384 -3.0222 -4.9183 11 6 5.5375 -3.8018 -5.7015 12 6 6.1178 -4.9690 -5.1676 13 6 6.9414 -5.7843 -5.9735 14 1 7.6563 -6.4509 -5.5144 15 6 6.8314 -5.7288 -7.3671 16 7 5.6724 -5.4816 -7.9227 17 14 8.3387 -6.0072 -8.4347 18 1 8.3947 -7.4318 -8.8501 19 1 8.2584 -5.1430 -9.6396 20 1 9.5614 -5.6682 -7.6631 21 6 5.8717 -5.3190 -3.8253 22 6 5.0750 -4.5264 -3.0529 23 6 3.4674 -1.2455 0.6835 24 6 2.0828 -0.7949 1.2123 25 1 1.4515 -1.6546 1.4365 26 6 2.2315 0.1082 2.4385 27 6 2.6520 -0.7207 3.6248 28 8 2.8164 -1.9113 3.5020 29 8 2.8449 -0.1359 4.8175 30 1 -0.3633 -1.0276 -0.0125 31 1 -0.3633 0.5029 0.8963 32 1 -0.3634 0.5247 -0.8835 33 1 1.3140 -1.4754 -1.5782 34 1 2.3685 -0.0992 -2.0002 35 1 2.9043 -2.1470 -3.1749 36 1 4.2895 -2.1291 -5.3273 37 1 5.7217 -3.5271 -6.7297 38 1 5.5962 -5.4435 -8.8890 39 1 6.3129 -6.2127 -3.4093 40 1 4.8850 -4.7936 -2.0238 41 1 3.8031 -2.1379 1.2118 42 1 4.1969 -0.4432 0.7938 43 1 2.9869 0.8686 2.2403 44 1 1.2777 0.5907 2.6522 45 1 3.1145 -0.7084 5.5486 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599859491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:07 Heat of formation + Delta-G solvation = -125.576291 kcal Electronic energy + Delta-G solvation = -27748.141245 eV Core-core repulsion = 23728.979504 eV Total energy + Delta-G solvation = -4019.161741 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.78060 -41.15488 -39.77061 -38.68011 -37.05412 -36.19956 -34.99375 -34.18631 -32.50664 -31.47993 -30.88561 -28.57653 -27.35168 -26.49061 -24.33240 -23.27390 -22.50890 -22.08808 -21.02358 -20.82978 -19.39898 -19.12040 -18.91188 -18.16387 -17.52357 -17.07119 -16.93136 -16.87291 -16.30132 -15.76669 -15.69345 -15.20221 -14.95945 -14.55334 -14.47142 -14.13922 -14.05526 -13.95468 -13.83758 -13.56328 -13.37258 -13.23556 -12.95250 -12.82980 -12.68380 -12.62827 -12.47788 -12.33294 -11.98151 -11.85558 -11.81634 -11.63257 -11.59417 -11.37292 -11.26654 -10.94824 -10.52823 -9.70982 -9.48953 -8.98038 -8.71087 -6.22783 0.85195 1.12456 1.28069 1.37900 1.44263 1.55481 1.63928 2.13518 2.19085 2.21013 2.65359 3.08928 3.42778 3.51772 3.69881 3.74169 4.08673 4.20165 4.30587 4.37351 4.47176 4.52071 4.55433 4.64906 4.66174 4.69901 4.83250 4.88555 4.91645 5.06318 5.08541 5.14192 5.15648 5.21369 5.30246 5.39559 5.44212 5.52232 5.62388 5.69623 5.79921 6.02591 6.11108 6.18019 6.35875 6.61375 6.88886 6.99488 7.02172 7.03534 7.62556 8.21192 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026896 B = 0.002162 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.806050 B =12948.789711 C =13696.545830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.079 4.079 3 H 0.117 0.883 4 C 0.090 3.910 5 N -0.636 5.636 6 C 0.706 3.294 7 O -0.629 6.629 8 N -0.654 5.654 9 C 0.010 3.990 10 C -0.099 4.099 11 C -0.187 4.187 12 C 0.083 3.917 13 C -0.505 4.505 14 H 0.073 0.927 15 C 0.052 3.948 16 N -0.798 5.798 17 Si 0.973 3.027 18 H -0.260 1.260 19 H -0.259 1.259 20 H -0.263 1.263 21 C -0.245 4.245 22 C -0.078 4.078 23 C 0.124 3.876 24 C -0.079 4.079 25 H 0.081 0.919 26 C -0.095 4.095 27 C 0.474 3.526 28 O -0.558 6.558 29 O -0.515 6.515 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.410 0.590 36 H 0.125 0.875 37 H 0.102 0.898 38 H 0.295 0.705 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.044 0.956 42 H 0.071 0.929 43 H 0.134 0.866 44 H 0.150 0.850 45 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.531 18.406 15.452 27.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.098 4.098 3 H 0.136 0.864 4 C -0.032 4.032 5 N -0.374 5.374 6 C 0.408 3.592 7 O -0.510 6.510 8 N -0.302 5.302 9 C -0.083 4.083 10 C -0.119 4.119 11 C -0.206 4.206 12 C 0.081 3.919 13 C -0.533 4.533 14 H 0.092 0.908 15 C -0.168 4.168 16 N -0.421 5.421 17 Si 0.793 3.207 18 H -0.184 1.184 19 H -0.183 1.183 20 H -0.187 1.187 21 C -0.265 4.265 22 C -0.099 4.099 23 C 0.001 3.999 24 C -0.098 4.098 25 H 0.099 0.901 26 C -0.133 4.133 27 C 0.319 3.681 28 O -0.449 6.449 29 O -0.328 6.328 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.247 0.753 36 H 0.143 0.857 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.152 0.848 44 H 0.167 0.833 45 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -13.057 17.920 15.206 26.886 hybrid contribution 0.742 -1.185 -0.051 1.400 sum -12.315 16.734 15.155 25.717 Atomic orbital electron populations 1.21796 0.91810 1.02345 1.03916 1.22248 0.97560 0.99661 0.90292 0.86449 1.22479 0.86578 0.95101 0.99039 1.47515 1.31874 1.46507 1.11518 1.15757 0.81981 0.79896 0.81564 1.90878 1.32831 1.54404 1.72916 1.41800 1.28999 1.51463 1.07900 1.16903 1.05604 0.94520 0.91309 1.20400 0.99465 0.99450 0.92565 1.20642 1.04167 0.96501 0.99336 1.17900 0.90273 0.92047 0.91722 1.19679 1.19202 1.22371 0.92020 0.90842 1.26735 0.99181 0.91360 0.99510 1.69948 1.25855 1.32265 1.14044 0.85354 0.78462 0.79527 0.77375 1.18412 1.18260 1.18690 1.20706 1.07671 1.01826 0.96298 1.20395 0.98199 0.93501 0.97754 1.22255 0.98418 1.00029 0.79178 1.22225 0.94684 0.98709 0.94215 0.90056 1.21427 1.07458 0.97590 0.86794 1.24085 0.72214 0.86899 0.84945 1.90794 1.49317 1.19288 1.85451 1.84489 1.80575 1.47008 1.20757 0.93311 0.89944 0.90790 0.91053 0.89923 0.75344 0.85697 0.87988 0.89421 0.89197 0.88843 0.93769 0.91048 0.84824 0.83250 0.71414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.15 71.98 0.66 -0.17 16 2 C -0.08 -0.74 3.01 -9.61 -0.03 -0.77 16 3 H 0.12 0.55 8.04 -2.39 -0.02 0.53 16 4 C 0.09 1.52 5.75 86.73 0.50 2.02 16 5 N -0.64 -18.05 3.33 -829.77 -2.76 -20.81 16 6 C 0.71 28.16 8.30 179.05 1.49 29.64 16 7 O -0.63 -31.80 14.21 -3.95 -0.06 -31.86 16 8 N -0.65 -24.91 5.26 -316.78 -1.66 -26.58 16 9 C 0.01 0.49 6.25 38.56 0.24 0.73 16 10 C -0.10 -4.62 9.90 22.13 0.22 -4.40 16 11 C -0.19 -9.96 8.74 22.48 0.20 -9.76 16 12 C 0.08 4.78 5.57 -21.27 -0.12 4.66 16 13 C -0.51 -28.41 8.94 23.39 0.21 -28.20 16 14 H 0.07 4.08 8.02 -2.91 -0.02 4.05 16 15 C 0.05 2.63 4.77 85.24 0.41 3.03 16 16 N -0.80 -41.14 11.78 21.82 0.26 -40.88 16 17 Si 0.97 38.16 29.66 68.60 2.03 40.19 16 18 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 19 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 20 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 21 C -0.24 -13.76 9.74 22.48 0.22 -13.55 16 22 C -0.08 -4.17 8.59 22.13 0.19 -3.98 16 23 C 0.12 3.09 5.88 86.86 0.51 3.60 16 24 C -0.08 -1.14 2.03 -9.40 -0.02 -1.15 16 25 H 0.08 1.49 7.78 -2.39 -0.02 1.47 16 26 C -0.10 -0.76 5.33 29.85 0.16 -0.60 16 27 C 0.47 7.12 8.18 71.24 0.58 7.70 16 28 O -0.56 -14.06 15.71 21.98 0.35 -13.72 16 29 O -0.51 -5.19 13.42 -51.41 -0.69 -5.88 16 30 H 0.05 0.43 8.12 -2.39 -0.02 0.41 16 31 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.07 0.32 8.14 -2.39 -0.02 0.31 16 33 H 0.07 1.17 7.79 -2.39 -0.02 1.15 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.41 12.08 7.81 -92.71 -0.72 11.36 16 36 H 0.13 4.85 8.06 -2.91 -0.02 4.82 16 37 H 0.10 5.46 6.53 -2.91 -0.02 5.44 16 38 H 0.29 13.42 8.30 -92.71 -0.77 12.65 16 39 H 0.09 4.92 8.06 -2.91 -0.02 4.89 16 40 H 0.09 5.10 6.45 -2.91 -0.02 5.08 16 41 H 0.04 1.48 7.39 -2.39 -0.02 1.46 16 42 H 0.07 1.60 7.91 -2.39 -0.02 1.58 16 43 H 0.13 0.55 7.97 -2.39 -0.02 0.53 16 44 H 0.15 0.17 8.14 -2.39 -0.02 0.15 16 45 H 0.42 1.63 9.10 -74.06 -0.67 0.96 16 Total: -1.00 -82.52 374.69 2.51 -80.00 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: -0.36 Total: 30.73 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 5.41 Total: -11.20 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -4.17 Total: -88.27 kcal Atomic # 8 Polarization: -51.06 SS G_CDS: -0.40 Total: -51.46 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.19 kcal Total: -82.52 2.51 -80.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599859491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.573 kcal (2) G-P(sol) polarization free energy of solvation -82.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds