Wall clock time and date at job start Tue Mar 31 2020 17:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.30199 * 2 1 4 4 C 1.54384 * 110.34232 * 122.17874 * 2 1 3 5 5 N 1.48146 * 104.61994 * 95.00606 * 4 2 1 6 6 C 1.34771 * 127.83606 * 219.58851 * 5 4 2 7 7 O 1.21583 * 120.00235 * 180.02562 * 6 5 4 8 8 N 1.34774 * 120.00311 * 0.02562 * 6 5 4 9 9 C 1.39245 * 120.00234 * 175.58311 * 8 6 5 10 10 C 1.39486 * 119.83469 * 215.20291 * 9 8 6 11 11 C 1.36367 * 120.16788 * 179.76040 * 10 9 8 12 12 C 1.40870 * 119.82959 * 0.53442 * 11 10 9 13 13 C 1.41154 * 120.16452 * 179.73937 * 12 11 10 14 14 H 1.08001 * 119.99563 * 148.74729 * 13 12 11 15 15 C 1.39889 * 120.00252 * 328.74213 * 13 12 11 16 16 N 1.30880 * 120.00172 * 167.74977 * 15 13 12 17 17 Si 1.86800 * 119.99943 * 347.75783 * 15 13 12 18 18 H 1.48493 * 109.47387 * 92.58812 * 17 15 13 19 19 H 1.48501 * 109.46872 * 212.58738 * 17 15 13 20 20 H 1.48498 * 109.47015 * 332.58716 * 17 15 13 21 21 C 1.40870 * 119.67130 * 359.72077 * 12 11 10 22 22 C 1.36377 * 119.82768 * 359.97438 * 21 12 11 23 23 C 1.48146 * 104.32400 * 39.83906 * 5 4 2 24 24 C 1.54285 * 110.33881 * 237.71482 * 2 1 3 25 25 C 1.53002 * 110.34490 * 0.10417 * 24 2 1 26 26 C 1.50706 * 110.34296 * 122.25831 * 24 2 1 27 27 O 1.20829 * 119.99883 * 359.97438 * 26 24 2 28 28 O 1.34226 * 119.99864 * 179.97438 * 26 24 2 29 29 H 1.09009 * 109.46853 * 299.27465 * 1 2 3 30 30 H 1.08999 * 109.47293 * 59.27683 * 1 2 3 31 31 H 1.08999 * 109.47034 * 179.27722 * 1 2 3 32 32 H 1.09001 * 110.41083 * 336.21284 * 4 2 1 33 33 H 1.09005 * 110.50367 * 213.83951 * 4 2 1 34 34 H 0.97003 * 120.00043 * 355.31409 * 8 6 5 35 35 H 1.08002 * 119.91009 * 359.97438 * 10 9 8 36 36 H 1.07997 * 120.08559 * 180.27474 * 11 10 9 37 37 H 0.96995 * 120.00267 * 180.02562 * 16 15 13 38 38 H 1.08001 * 120.08691 * 180.02562 * 21 12 11 39 39 H 1.08000 * 119.91248 * 179.97438 * 22 21 12 40 40 H 1.08999 * 110.40194 * 78.94105 * 23 5 4 41 41 H 1.08998 * 110.40942 * 201.36987 * 23 5 4 42 42 H 1.09002 * 109.46906 * 59.99900 * 25 24 2 43 43 H 1.08999 * 109.47064 * 179.97438 * 25 24 2 44 44 H 1.08991 * 109.46899 * 299.99811 * 25 24 2 45 45 H 0.96707 * 116.99284 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7709 1.2252 5 7 2.3140 -2.1431 0.7246 6 6 2.0773 -3.3092 1.3576 7 8 2.3371 -4.3625 0.8088 8 7 1.5527 -3.3077 2.5991 9 6 1.2227 -4.5112 3.2169 10 6 0.1075 -4.5796 4.0520 11 6 -0.2248 -5.7558 4.6566 12 6 0.5680 -6.9009 4.4450 13 6 0.2337 -8.1207 5.0717 14 1 0.4609 -9.0578 4.5851 15 6 -0.3918 -8.1159 6.3229 16 7 -0.9164 -9.2174 6.7966 17 14 -0.4784 -6.5372 7.3177 18 1 -1.7502 -5.8319 7.0172 19 1 -0.4223 -6.8610 8.7659 20 1 0.6683 -5.6638 6.9609 21 6 1.6958 -6.8227 3.6045 22 6 2.0119 -5.6409 3.0018 23 6 2.8861 -1.9427 -0.6271 24 6 2.0662 -0.7727 -1.2230 25 6 0.9060 -1.3032 -2.0676 26 6 2.9555 0.1151 -2.0550 27 8 3.1527 1.2587 -1.7182 28 8 3.5285 -0.3645 -3.1700 29 1 -0.3633 0.5026 0.8965 30 1 -0.3634 0.5250 -0.8834 31 1 -0.3633 -1.0276 -0.0130 32 1 1.3223 -0.7850 2.0214 33 1 2.9946 -0.3233 1.5815 34 1 1.4087 -2.4685 3.0638 35 1 -0.4963 -3.6994 4.2173 36 1 -1.0911 -5.8083 5.2994 37 1 -1.3505 -9.2140 7.6640 38 1 2.3080 -7.6965 3.4372 39 1 2.8765 -5.5792 2.3575 40 1 3.9403 -1.6746 -0.5576 41 1 2.7607 -2.8419 -1.2301 42 1 0.2970 -0.4681 -2.4138 43 1 1.3004 -1.8456 -2.9269 44 1 0.2941 -1.9735 -1.4641 45 1 4.0904 0.2427 -3.6708 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599922744.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:49 Heat of formation + Delta-G solvation = -106.560275 kcal Electronic energy + Delta-G solvation = -28538.461532 eV Core-core repulsion = 24520.124387 eV Total energy + Delta-G solvation = -4018.337145 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.25404 -41.25485 -39.80599 -38.78518 -37.14357 -36.16600 -35.04339 -34.34606 -32.22447 -31.71664 -31.33964 -28.57158 -26.98816 -26.48191 -25.21355 -23.76781 -23.23001 -22.43876 -21.11178 -20.07563 -19.54061 -19.22359 -18.98082 -18.34748 -17.90110 -17.07423 -16.73237 -16.62716 -16.25928 -15.72943 -15.62307 -15.18624 -15.08167 -14.78666 -14.63090 -14.48579 -14.25827 -14.11777 -14.06412 -13.80037 -13.48354 -13.35197 -12.98759 -12.68384 -12.63852 -12.60817 -12.48347 -12.38675 -12.07038 -11.96844 -11.73288 -11.70848 -11.61412 -11.51006 -11.24113 -10.92400 -10.72998 -9.87880 -9.59287 -8.89635 -8.83418 -6.42312 0.67494 0.88590 1.04823 1.29010 1.41760 1.48386 1.54211 2.02982 2.09450 2.16804 2.66730 2.97485 3.21170 3.35055 3.51542 3.68749 4.01690 4.11857 4.24513 4.26035 4.33181 4.42767 4.50884 4.57128 4.59749 4.68076 4.70746 4.76587 4.80290 4.91523 4.94915 5.02675 5.08547 5.11393 5.13146 5.25937 5.40228 5.44394 5.50054 5.56434 5.69835 5.84499 5.95154 6.07998 6.27412 6.39669 6.74710 6.83074 6.93632 6.95393 7.56243 8.24977 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028842 B = 0.002512 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.569977 B =11145.310903 C =11587.938501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.112 0.888 4 C 0.099 3.901 5 N -0.635 5.635 6 C 0.721 3.279 7 O -0.618 6.618 8 N -0.656 5.656 9 C 0.042 3.958 10 C -0.087 4.087 11 C -0.230 4.230 12 C 0.066 3.934 13 C -0.482 4.482 14 H 0.050 0.950 15 C 0.039 3.961 16 N -0.860 5.860 17 Si 0.974 3.026 18 H -0.251 1.251 19 H -0.283 1.283 20 H -0.246 1.246 21 C -0.209 4.209 22 C -0.079 4.079 23 C 0.140 3.860 24 C -0.061 4.061 25 C -0.135 4.135 26 C 0.504 3.496 27 O -0.534 6.534 28 O -0.507 6.507 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.414 0.586 35 H 0.141 0.859 36 H 0.109 0.891 37 H 0.293 0.707 38 H 0.097 0.903 39 H 0.113 0.887 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.110 25.398 -14.131 29.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.130 0.870 4 C -0.023 4.023 5 N -0.373 5.373 6 C 0.424 3.576 7 O -0.498 6.498 8 N -0.304 5.304 9 C -0.052 4.052 10 C -0.108 4.108 11 C -0.250 4.250 12 C 0.063 3.937 13 C -0.512 4.512 14 H 0.068 0.932 15 C -0.174 4.174 16 N -0.487 5.487 17 Si 0.797 3.203 18 H -0.176 1.176 19 H -0.211 1.211 20 H -0.170 1.170 21 C -0.229 4.229 22 C -0.099 4.099 23 C 0.016 3.984 24 C -0.064 4.064 25 C -0.192 4.192 26 C 0.346 3.654 27 O -0.424 6.424 28 O -0.320 6.320 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.252 0.748 35 H 0.159 0.841 36 H 0.126 0.874 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.131 0.869 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 3.964 24.409 -14.026 28.430 hybrid contribution 0.378 0.282 0.249 0.533 sum 4.342 24.691 -13.777 28.606 Atomic orbital electron populations 1.21952 0.92586 1.02230 1.03322 1.22222 0.97749 1.00186 0.90805 0.87019 1.22770 1.02257 0.79901 0.97420 1.47855 1.66978 1.04426 1.18060 1.15438 0.78578 0.82571 0.80995 1.90910 1.59914 1.30926 1.68004 1.41823 1.66075 1.08158 1.14352 1.17024 0.98333 0.86336 1.03556 1.20436 0.94586 0.97857 0.97893 1.20753 1.01984 0.94345 1.07908 1.17895 0.90848 0.92803 0.92110 1.19420 1.34796 0.93277 1.03689 0.93154 1.26943 0.90582 1.01265 0.98603 1.69721 1.28206 1.31093 1.19644 0.85394 0.81202 0.78036 0.75678 1.17637 1.21050 1.16968 1.20833 0.99119 0.97564 1.05394 1.20641 0.98703 0.92722 0.97870 1.22181 0.96365 0.97413 0.82400 1.21488 0.95302 0.94480 0.95091 1.21925 0.95985 1.01990 0.99309 1.22962 0.77261 0.86011 0.79155 1.90702 1.60298 1.20643 1.70708 1.84520 1.61241 1.49551 1.36700 0.90699 0.91271 0.92847 0.88311 0.89317 0.74830 0.84089 0.87379 0.89689 0.88518 0.86927 0.90187 0.89694 0.90117 0.90999 0.91325 0.70767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 7.92 71.98 0.57 -1.03 16 2 C -0.09 -1.15 3.24 -9.89 -0.03 -1.18 16 3 H 0.11 1.47 6.47 -2.39 -0.02 1.45 16 4 C 0.10 1.36 6.43 86.53 0.56 1.92 16 5 N -0.64 -13.86 3.31 -825.12 -2.73 -16.60 16 6 C 0.72 22.69 8.40 179.06 1.50 24.20 16 7 O -0.62 -25.39 14.03 -3.98 -0.06 -25.44 16 8 N -0.66 -19.55 5.27 -316.79 -1.67 -21.22 16 9 C 0.04 1.63 6.30 38.56 0.24 1.87 16 10 C -0.09 -3.37 9.90 22.13 0.22 -3.15 16 11 C -0.23 -10.59 6.93 22.48 0.16 -10.43 16 12 C 0.07 3.46 5.13 -21.27 -0.11 3.36 16 13 C -0.48 -27.79 9.59 23.39 0.22 -27.57 16 14 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 15 C 0.04 2.11 5.47 85.23 0.47 2.58 16 16 N -0.86 -48.06 13.93 21.82 0.30 -47.76 16 17 Si 0.97 42.18 24.40 68.60 1.67 43.85 16 18 H -0.25 -9.97 6.66 99.48 0.66 -9.31 16 19 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.25 -10.67 6.67 99.48 0.66 -10.01 16 21 C -0.21 -10.42 9.74 22.48 0.22 -10.20 16 22 C -0.08 -3.57 8.61 22.13 0.19 -3.38 16 23 C 0.14 2.65 6.15 86.67 0.53 3.19 16 24 C -0.06 -0.88 0.97 -51.88 -0.05 -0.94 16 25 C -0.14 -1.81 7.21 71.98 0.52 -1.29 16 26 C 0.50 7.25 6.85 71.24 0.49 7.74 16 27 O -0.53 -10.11 16.02 21.95 0.35 -9.76 16 28 O -0.51 -5.12 13.28 -51.38 -0.68 -5.80 16 29 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.07 0.67 6.98 -2.39 -0.02 0.66 16 31 H 0.05 0.75 6.62 -2.39 -0.02 0.73 16 32 H 0.10 1.07 6.65 -2.39 -0.02 1.05 16 33 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.41 8.86 7.26 -92.71 -0.67 8.19 16 35 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 36 H 0.11 4.84 4.40 -2.91 -0.01 4.83 16 37 H 0.29 14.66 8.30 -92.71 -0.77 13.89 16 38 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 39 H 0.11 5.12 6.23 -2.91 -0.02 5.11 16 40 H 0.08 1.38 7.86 -2.39 -0.02 1.36 16 41 H 0.08 1.89 7.62 -2.39 -0.02 1.87 16 42 H 0.08 0.85 6.89 -2.39 -0.02 0.84 16 43 H 0.07 0.95 8.07 -2.39 -0.02 0.93 16 44 H 0.07 1.11 6.72 -2.39 -0.02 1.10 16 45 H 0.43 0.65 9.10 -74.05 -0.67 -0.02 16 Total: -1.00 -74.13 359.16 2.51 -71.62 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: -0.38 Total: 25.43 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: 5.70 Total: -14.32 kcal Atomic # 7 Polarization: -81.48 SS G_CDS: -4.10 Total: -85.58 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -0.39 Total: -41.00 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.67 Total: 43.85 kcal Total: -74.13 2.51 -71.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599922744.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.938 kcal (2) G-P(sol) polarization free energy of solvation -74.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds