Wall clock time and date at job start Tue Mar 31 2020 18:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47023 * 2 1 4 4 C 1.52997 * 109.47350 * 239.99724 * 2 1 3 5 5 C 1.50699 * 109.47206 * 175.00426 * 4 2 1 6 6 O 1.20824 * 120.00058 * 359.97438 * 5 4 2 7 7 O 1.34237 * 119.99659 * 179.97438 * 5 4 2 8 8 N 1.46501 * 109.46741 * 119.99652 * 2 1 3 9 9 C 1.34775 * 120.00435 * 274.99899 * 8 2 1 10 10 O 1.21591 * 119.99513 * 4.91313 * 9 8 2 11 11 N 1.34769 * 120.00554 * 184.91103 * 9 8 2 12 12 C 1.47234 * 121.34868 * 174.80827 * 11 9 8 13 13 C 1.52781 * 107.85873 * 115.95034 * 12 11 9 14 14 C 1.50566 * 110.87766 * 47.37176 * 13 12 11 15 15 C 1.41413 * 117.63234 * 160.36205 * 14 13 12 16 16 C 1.41393 * 119.96902 * 358.87045 * 15 14 13 17 17 H 1.08000 * 119.99930 * 331.76585 * 16 15 14 18 18 C 1.39949 * 120.00387 * 151.47767 * 16 15 14 19 19 N 1.30827 * 120.00126 * 344.76104 * 18 16 15 20 20 Si 1.86804 * 119.99952 * 164.75334 * 18 16 15 21 21 H 1.48497 * 109.46806 * 94.63547 * 20 18 16 22 22 H 1.48502 * 109.46958 * 214.63208 * 20 18 16 23 23 H 1.48500 * 109.47214 * 334.63326 * 20 18 16 24 24 C 1.40414 * 120.06935 * 179.14624 * 15 14 13 25 25 C 1.37647 * 119.53899 * 359.61134 * 24 15 14 26 26 C 1.38331 * 119.98761 * 0.66964 * 25 24 15 27 27 C 1.37046 * 123.00150 * 339.81024 * 14 13 12 28 28 C 1.46670 * 121.33975 * 354.78731 * 11 9 8 29 29 H 1.09003 * 109.47370 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47313 * 300.00203 * 1 2 3 31 31 H 1.09000 * 109.47122 * 60.00656 * 1 2 3 32 32 H 1.09002 * 109.46982 * 295.00315 * 4 2 1 33 33 H 1.09002 * 109.47075 * 54.99710 * 4 2 1 34 34 H 0.96703 * 116.99328 * 179.97438 * 7 5 4 35 35 H 0.97002 * 119.99954 * 95.00186 * 8 2 1 36 36 H 1.09009 * 109.78238 * 356.35825 * 12 11 9 37 37 H 1.09002 * 109.78630 * 235.54042 * 12 11 9 38 38 H 1.09006 * 109.19705 * 287.01287 * 13 12 11 39 39 H 1.09005 * 109.16224 * 167.70755 * 13 12 11 40 40 H 0.96996 * 119.99956 * 179.97438 * 19 18 16 41 41 H 1.07995 * 120.23275 * 179.82860 * 24 15 14 42 42 H 1.07996 * 120.00601 * 180.40840 * 25 24 15 43 43 H 1.07993 * 119.47824 * 179.72475 * 26 25 24 44 44 H 1.08992 * 109.42990 * 344.43890 * 28 11 9 45 45 H 1.09004 * 109.42941 * 104.34486 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 8 4.1427 -0.0227 -0.4476 7 8 4.2122 -1.1784 -2.3300 8 7 2.0182 -0.6906 1.1962 9 6 2.1470 -0.0182 2.3572 10 8 1.7744 1.1366 2.4354 11 7 2.6885 -0.6258 3.4314 12 6 2.9471 0.1118 4.6792 13 6 2.0645 -0.4907 5.7711 14 6 2.1541 -1.9937 5.7650 15 6 1.7590 -2.6790 6.9372 16 6 1.3228 -1.9508 8.0680 17 1 1.6915 -0.9506 8.2412 18 6 0.4088 -2.5239 8.9595 19 7 -0.2667 -3.5883 8.6097 20 14 0.1535 -1.7692 10.6491 21 1 -1.0020 -0.8375 10.6055 22 1 -0.1152 -2.8453 11.6364 23 1 1.3749 -1.0247 11.0484 24 6 1.8048 -4.0817 6.9813 25 6 2.2286 -4.7820 5.8746 26 6 2.6187 -4.1029 4.7343 27 6 2.5865 -2.7113 4.6804 28 6 3.0437 -2.0486 3.4047 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.7516 -1.7716 -1.2055 33 1 1.6054 -0.2618 -2.1369 34 1 5.1746 -1.0834 -2.3277 35 1 2.2489 -1.6317 1.1527 36 1 2.6994 1.1646 4.5435 37 1 3.9966 0.0118 4.9562 38 1 1.0299 -0.1927 5.6007 39 1 2.3901 -0.1162 6.7416 40 1 -0.8999 -3.9856 9.2277 41 1 1.5063 -4.6077 7.8760 42 1 2.2605 -5.8612 5.8980 43 1 2.9540 -4.6604 3.8724 44 1 2.5594 -2.5273 2.5537 45 1 4.1249 -2.1507 3.3113 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603127544.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:36 Heat of formation + Delta-G solvation = -102.682886 kcal Electronic energy + Delta-G solvation = -28814.078840 eV Core-core repulsion = 24795.909831 eV Total energy + Delta-G solvation = -4018.169009 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.69370 -39.90309 -38.23832 -36.65874 -35.85906 -35.15931 -33.63449 -32.47188 -31.01934 -29.99838 -28.76668 -28.42381 -25.26363 -24.84881 -23.36602 -22.55330 -20.98312 -20.58455 -20.29684 -18.86665 -18.27942 -17.35199 -17.10854 -16.77142 -16.54506 -15.80683 -15.40476 -15.18708 -14.73566 -14.31556 -14.23650 -13.78354 -13.72549 -13.32735 -13.23250 -12.96388 -12.73263 -12.64084 -12.40145 -12.34610 -12.03379 -11.73145 -11.72085 -11.48222 -11.42405 -11.30011 -11.15589 -11.06250 -10.76251 -10.57814 -10.47029 -10.28506 -9.82647 -9.61000 -9.28987 -9.17023 -8.97901 -8.05478 -7.33105 -7.27950 -6.75585 -4.37463 1.98016 2.73654 2.74539 2.86069 2.92166 3.07247 3.11082 3.17947 3.57907 3.93199 4.14630 4.30300 4.59285 4.74875 4.88620 5.14411 5.25770 5.33201 5.39411 5.48919 5.57619 5.65677 5.83173 5.88840 5.91253 5.97998 6.04709 6.18115 6.25231 6.30186 6.35660 6.49196 6.66122 6.71412 6.85410 6.96416 7.10171 7.17473 7.31630 7.33450 7.58966 7.64844 7.82062 7.98189 8.02279 8.19642 8.31681 8.60136 8.86515 8.92819 8.94302 10.19912 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019416 B = 0.002946 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.783208 B = 9503.158041 C =10035.449007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.173 3.827 3 H 0.096 0.904 4 C -0.123 4.123 5 C 0.470 3.530 6 O -0.496 6.496 7 O -0.522 6.522 8 N -0.741 5.741 9 C 0.720 3.280 10 O -0.597 6.597 11 N -0.621 5.621 12 C 0.131 3.869 13 C -0.069 4.069 14 C -0.165 4.165 15 C 0.114 3.886 16 C -0.463 4.463 17 H 0.081 0.919 18 C 0.076 3.924 19 N -0.797 5.797 20 Si 0.905 3.095 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.260 1.260 24 C -0.162 4.162 25 C -0.104 4.104 26 C -0.235 4.235 27 C -0.081 4.081 28 C 0.166 3.834 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.410 0.590 35 H 0.392 0.608 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.279 0.721 41 H 0.114 0.886 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.071 1.917 -16.852 17.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.067 3.933 3 H 0.114 0.886 4 C -0.161 4.161 5 C 0.311 3.689 6 O -0.382 6.382 7 O -0.335 6.335 8 N -0.398 5.398 9 C 0.422 3.578 10 O -0.476 6.476 11 N -0.356 5.356 12 C 0.009 3.991 13 C -0.107 4.107 14 C -0.167 4.167 15 C 0.111 3.889 16 C -0.492 4.492 17 H 0.099 0.901 18 C -0.141 4.141 19 N -0.423 5.423 20 Si 0.730 3.270 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.181 4.181 25 C -0.122 4.122 26 C -0.255 4.255 27 C -0.082 4.082 28 C 0.043 3.957 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.129 0.871 33 H 0.139 0.861 34 H 0.269 0.731 35 H 0.227 0.773 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.132 0.868 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.364 2.767 -16.464 17.031 hybrid contribution 0.465 -0.512 0.751 1.022 sum 3.830 2.255 -15.713 16.329 Atomic orbital electron populations 1.22213 0.94328 1.02564 1.03184 1.20530 0.93922 0.97469 0.81372 0.88618 1.21792 0.87876 1.05122 1.01355 1.23471 0.91740 0.75254 0.78423 1.90823 1.70199 1.38960 1.38169 1.84527 1.27165 1.72962 1.48830 1.45156 1.72478 1.13276 1.08885 1.15582 0.78000 0.84301 0.79918 1.90855 1.56211 1.16728 1.83850 1.47167 1.65257 1.10325 1.12885 1.21571 0.98984 0.96364 0.82208 1.20441 0.99261 0.93493 0.97460 1.19276 1.10068 0.93606 0.93714 1.17588 0.88524 0.91941 0.90819 1.19589 1.22176 1.01853 1.05622 0.90116 1.25872 0.94237 0.94302 0.99672 1.69817 1.18190 1.18612 1.35665 0.86345 0.79618 0.79546 0.81516 1.19604 1.20145 1.18417 1.21192 1.04408 0.94512 0.97994 1.20566 1.00040 0.97316 0.94296 1.20149 1.13902 0.92592 0.98811 1.19087 1.01984 0.93383 0.93707 1.20266 0.98798 0.79821 0.96839 0.92203 0.90876 0.91632 0.87068 0.86089 0.73149 0.77252 0.89553 0.91832 0.92095 0.90639 0.90982 0.86776 0.89377 0.89587 0.91424 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.48 37.16 0.35 -1.28 16 2 C 0.17 1.91 2.10 -67.93 -0.14 1.76 16 3 H 0.10 1.28 7.47 -51.93 -0.39 0.90 16 4 C -0.12 -0.88 5.35 -27.89 -0.15 -1.03 16 5 C 0.47 4.42 8.19 36.01 0.29 4.71 16 6 O -0.50 -6.79 16.11 -18.75 -0.30 -7.09 16 7 O -0.52 -3.62 13.42 -39.27 -0.53 -4.15 16 8 N -0.74 -10.24 4.12 -58.68 -0.24 -10.48 16 9 C 0.72 13.09 8.28 -86.93 -0.72 12.37 16 10 O -0.60 -12.61 15.52 5.29 0.08 -12.53 16 11 N -0.62 -11.33 2.94 -180.11 -0.53 -11.86 16 12 C 0.13 2.43 6.44 -3.75 -0.02 2.41 16 13 C -0.07 -1.44 5.27 -28.06 -0.15 -1.59 16 14 C -0.17 -3.85 5.82 -103.91 -0.60 -4.45 16 15 C 0.11 2.92 5.54 -106.67 -0.59 2.33 16 16 C -0.46 -11.88 8.30 -37.74 -0.31 -12.19 16 17 H 0.08 1.98 6.29 -52.49 -0.33 1.65 16 18 C 0.08 1.89 5.15 -17.34 -0.09 1.80 16 19 N -0.80 -20.47 11.08 55.55 0.62 -19.85 16 20 Si 0.91 18.58 29.59 -169.99 -5.03 13.55 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 23 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 24 C -0.16 -4.10 8.65 -38.98 -0.34 -4.43 16 25 C -0.10 -2.35 10.03 -39.76 -0.40 -2.75 16 26 C -0.23 -4.94 9.63 -39.15 -0.38 -5.32 16 27 C -0.08 -1.71 5.82 -104.58 -0.61 -2.32 16 28 C 0.17 2.85 6.06 -5.02 -0.03 2.82 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.41 1.43 9.10 45.56 0.41 1.84 16 35 H 0.39 4.75 6.26 -40.82 -0.26 4.49 16 36 H 0.09 1.60 7.10 -51.92 -0.37 1.23 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.08 1.54 6.44 -51.93 -0.33 1.21 16 40 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 41 H 0.11 3.00 6.36 -52.49 -0.33 2.67 16 42 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.09 1.56 8.05 -52.49 -0.42 1.14 16 44 H 0.07 1.01 5.97 -51.93 -0.31 0.69 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 368.71 15.07 5.56 5.56 Total: -1.00 -33.04 368.71 -9.53 -42.57 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -5.27 Total: 11.44 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -3.89 Total: -7.15 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: -0.16 Total: -42.19 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.75 Total: -23.77 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.04 -9.53 -42.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603127544.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.117 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds