Wall clock time and date at job start Tue Mar 31 2020 18:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47023 * 2 1 4 4 C 1.52997 * 109.47350 * 239.99724 * 2 1 3 5 5 C 1.50699 * 109.47206 * 175.00426 * 4 2 1 6 6 O 1.20824 * 120.00058 * 359.97438 * 5 4 2 7 7 O 1.34237 * 119.99659 * 179.97438 * 5 4 2 8 8 N 1.46501 * 109.46741 * 119.99652 * 2 1 3 9 9 C 1.34775 * 120.00435 * 274.99899 * 8 2 1 10 10 O 1.21591 * 119.99513 * 4.91313 * 9 8 2 11 11 N 1.34769 * 120.00554 * 184.91103 * 9 8 2 12 12 C 1.47234 * 121.34868 * 174.80827 * 11 9 8 13 13 C 1.52781 * 107.85873 * 115.95034 * 12 11 9 14 14 C 1.50566 * 110.87766 * 47.37176 * 13 12 11 15 15 C 1.41413 * 117.63234 * 160.36205 * 14 13 12 16 16 C 1.41393 * 119.96902 * 358.87045 * 15 14 13 17 17 H 1.08000 * 119.99930 * 331.76585 * 16 15 14 18 18 C 1.39949 * 120.00387 * 151.47767 * 16 15 14 19 19 N 1.30827 * 120.00126 * 344.76104 * 18 16 15 20 20 Si 1.86804 * 119.99952 * 164.75334 * 18 16 15 21 21 H 1.48497 * 109.46806 * 94.63547 * 20 18 16 22 22 H 1.48502 * 109.46958 * 214.63208 * 20 18 16 23 23 H 1.48500 * 109.47214 * 334.63326 * 20 18 16 24 24 C 1.40414 * 120.06935 * 179.14624 * 15 14 13 25 25 C 1.37647 * 119.53899 * 359.61134 * 24 15 14 26 26 C 1.38331 * 119.98761 * 0.66964 * 25 24 15 27 27 C 1.37046 * 123.00150 * 339.81024 * 14 13 12 28 28 C 1.46670 * 121.33975 * 354.78731 * 11 9 8 29 29 H 1.09003 * 109.47370 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47313 * 300.00203 * 1 2 3 31 31 H 1.09000 * 109.47122 * 60.00656 * 1 2 3 32 32 H 1.09002 * 109.46982 * 295.00315 * 4 2 1 33 33 H 1.09002 * 109.47075 * 54.99710 * 4 2 1 34 34 H 0.96703 * 116.99328 * 179.97438 * 7 5 4 35 35 H 0.97002 * 119.99954 * 95.00186 * 8 2 1 36 36 H 1.09009 * 109.78238 * 356.35825 * 12 11 9 37 37 H 1.09002 * 109.78630 * 235.54042 * 12 11 9 38 38 H 1.09006 * 109.19705 * 287.01287 * 13 12 11 39 39 H 1.09005 * 109.16224 * 167.70755 * 13 12 11 40 40 H 0.96996 * 119.99956 * 179.97438 * 19 18 16 41 41 H 1.07995 * 120.23275 * 179.82860 * 24 15 14 42 42 H 1.07996 * 120.00601 * 180.40840 * 25 24 15 43 43 H 1.07993 * 119.47824 * 179.72475 * 26 25 24 44 44 H 1.08992 * 109.42990 * 344.43890 * 28 11 9 45 45 H 1.09004 * 109.42941 * 104.34486 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 8 4.1427 -0.0227 -0.4476 7 8 4.2122 -1.1784 -2.3300 8 7 2.0182 -0.6906 1.1962 9 6 2.1470 -0.0182 2.3572 10 8 1.7744 1.1366 2.4354 11 7 2.6885 -0.6258 3.4314 12 6 2.9471 0.1118 4.6792 13 6 2.0645 -0.4907 5.7711 14 6 2.1541 -1.9937 5.7650 15 6 1.7590 -2.6790 6.9372 16 6 1.3228 -1.9508 8.0680 17 1 1.6915 -0.9506 8.2412 18 6 0.4088 -2.5239 8.9595 19 7 -0.2667 -3.5883 8.6097 20 14 0.1535 -1.7692 10.6491 21 1 -1.0020 -0.8375 10.6055 22 1 -0.1152 -2.8453 11.6364 23 1 1.3749 -1.0247 11.0484 24 6 1.8048 -4.0817 6.9813 25 6 2.2286 -4.7820 5.8746 26 6 2.6187 -4.1029 4.7343 27 6 2.5865 -2.7113 4.6804 28 6 3.0437 -2.0486 3.4047 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.7516 -1.7716 -1.2055 33 1 1.6054 -0.2618 -2.1369 34 1 5.1746 -1.0834 -2.3277 35 1 2.2489 -1.6317 1.1527 36 1 2.6994 1.1646 4.5435 37 1 3.9966 0.0118 4.9562 38 1 1.0299 -0.1927 5.6007 39 1 2.3901 -0.1162 6.7416 40 1 -0.8999 -3.9856 9.2277 41 1 1.5063 -4.6077 7.8760 42 1 2.2605 -5.8612 5.8980 43 1 2.9540 -4.6604 3.8724 44 1 2.5594 -2.5273 2.5537 45 1 4.1249 -2.1507 3.3113 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603127544.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:34 Heat of formation + Delta-G solvation = -123.806032 kcal Electronic energy + Delta-G solvation = -28814.994808 eV Core-core repulsion = 24795.909831 eV Total energy + Delta-G solvation = -4019.084977 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.69245 -41.03737 -39.81835 -37.59107 -36.95407 -36.49226 -35.42696 -33.93407 -32.37675 -31.60253 -30.27501 -29.29158 -27.07598 -26.39410 -24.70180 -23.61081 -22.40482 -22.05376 -21.46216 -20.32191 -18.96421 -18.87510 -18.74120 -17.68612 -17.49679 -17.18114 -16.72914 -16.63727 -16.16574 -15.76361 -15.64232 -15.30375 -15.02595 -14.66086 -14.60997 -14.30097 -13.94741 -13.77996 -13.47518 -13.37655 -13.22773 -13.14179 -13.10825 -12.93895 -12.84599 -12.71749 -12.43620 -12.27215 -12.16128 -12.01284 -11.97978 -11.53184 -11.48078 -11.19249 -11.06605 -10.99064 -10.20068 -9.48575 -9.16188 -9.04373 -8.59508 -6.30011 0.99115 1.05869 1.31033 1.37142 1.47631 1.52225 1.67806 2.16487 2.20602 2.21181 2.75009 2.95653 3.57883 3.65874 3.94486 4.10336 4.13326 4.23928 4.29451 4.36731 4.47045 4.53397 4.56929 4.62488 4.65021 4.69405 4.74382 4.85666 4.88263 4.98852 5.08913 5.16569 5.27633 5.31502 5.36432 5.40206 5.57553 5.61920 5.71369 5.77478 5.95086 6.08595 6.16472 6.18656 6.41465 6.73879 6.97412 6.99717 7.07298 7.07561 7.58748 8.37981 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019416 B = 0.002946 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.783208 B = 9503.158041 C =10035.449007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.167 3.833 3 H 0.066 0.934 4 C -0.113 4.113 5 C 0.475 3.525 6 O -0.548 6.548 7 O -0.514 6.514 8 N -0.727 5.727 9 C 0.712 3.288 10 O -0.635 6.635 11 N -0.627 5.627 12 C 0.138 3.862 13 C -0.059 4.059 14 C -0.183 4.183 15 C 0.081 3.919 16 C -0.496 4.496 17 H 0.078 0.922 18 C 0.035 3.965 19 N -0.833 5.833 20 Si 0.974 3.026 21 H -0.267 1.267 22 H -0.268 1.268 23 H -0.258 1.258 24 C -0.191 4.191 25 C -0.110 4.110 26 C -0.224 4.224 27 C -0.083 4.083 28 C 0.170 3.830 29 H 0.074 0.926 30 H 0.032 0.968 31 H 0.096 0.904 32 H 0.141 0.859 33 H 0.157 0.843 34 H 0.425 0.575 35 H 0.402 0.598 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.036 0.964 39 H 0.071 0.929 40 H 0.284 0.716 41 H 0.092 0.908 42 H 0.111 0.889 43 H 0.127 0.873 44 H 0.098 0.902 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.671 0.888 -19.748 20.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.062 3.938 3 H 0.084 0.916 4 C -0.151 4.151 5 C 0.318 3.682 6 O -0.438 6.438 7 O -0.327 6.327 8 N -0.384 5.384 9 C 0.414 3.586 10 O -0.517 6.517 11 N -0.362 5.362 12 C 0.015 3.985 13 C -0.097 4.097 14 C -0.185 4.185 15 C 0.079 3.921 16 C -0.526 4.526 17 H 0.096 0.904 18 C -0.179 4.179 19 N -0.460 5.460 20 Si 0.795 3.205 21 H -0.192 1.192 22 H -0.192 1.192 23 H -0.181 1.181 24 C -0.210 4.210 25 C -0.129 4.129 26 C -0.243 4.243 27 C -0.084 4.084 28 C 0.048 3.952 29 H 0.093 0.907 30 H 0.051 0.949 31 H 0.114 0.886 32 H 0.158 0.842 33 H 0.174 0.826 34 H 0.286 0.714 35 H 0.240 0.760 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.055 0.945 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.129 0.871 43 H 0.145 0.855 44 H 0.116 0.884 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.980 1.692 -19.428 19.904 hybrid contribution 0.341 -0.248 1.451 1.511 sum 4.321 1.444 -17.977 18.545 Atomic orbital electron populations 1.22149 0.93366 1.03369 1.02739 1.20697 0.94624 0.96486 0.81954 0.91587 1.21811 0.86426 1.06572 1.00265 1.23850 0.92558 0.73971 0.77776 1.90823 1.71350 1.41371 1.40212 1.84495 1.28591 1.72046 1.47596 1.45141 1.71338 1.13634 1.08273 1.15844 0.77790 0.84125 0.80860 1.90825 1.57705 1.18547 1.84579 1.47211 1.65434 1.10815 1.12780 1.21434 0.99164 0.96017 0.81862 1.20315 0.98352 0.92647 0.98393 1.19607 1.10248 0.94672 0.93935 1.17952 0.89554 0.92559 0.92004 1.19811 1.23490 1.02194 1.07062 0.90387 1.26658 0.93567 0.94688 1.02983 1.69882 1.19030 1.20046 1.37003 0.85311 0.79443 0.78778 0.76920 1.19227 1.19244 1.18137 1.21162 1.06569 0.94723 0.98587 1.20881 0.99315 0.98632 0.94034 1.20603 1.11680 0.92771 0.99268 1.19551 1.00400 0.93873 0.94583 1.20375 1.00285 0.78937 0.95614 0.90680 0.94862 0.88572 0.84164 0.82559 0.71399 0.76011 0.89968 0.90181 0.94538 0.91035 0.90532 0.88946 0.87113 0.85471 0.88381 0.89585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.48 71.98 0.68 -2.12 16 2 C 0.17 3.35 2.10 44.99 0.09 3.44 16 3 H 0.07 1.75 7.47 -2.39 -0.02 1.73 16 4 C -0.11 -1.16 5.35 29.85 0.16 -1.00 16 5 C 0.47 7.51 8.19 71.24 0.58 8.09 16 6 O -0.55 -14.19 16.11 21.97 0.35 -13.84 16 7 O -0.51 -5.32 13.42 -51.48 -0.69 -6.01 16 8 N -0.73 -18.65 4.12 -457.82 -1.89 -20.54 16 9 C 0.71 25.46 8.28 179.06 1.48 26.94 16 10 O -0.63 -27.32 15.52 -4.00 -0.06 -27.38 16 11 N -0.63 -22.20 2.94 -842.00 -2.47 -24.67 16 12 C 0.14 5.15 6.44 86.17 0.55 5.70 16 13 C -0.06 -2.56 5.27 29.73 0.16 -2.40 16 14 C -0.18 -8.66 5.82 -19.40 -0.11 -8.77 16 15 C 0.08 4.34 5.54 -21.19 -0.12 4.22 16 16 C -0.50 -26.68 8.30 23.46 0.19 -26.48 16 17 H 0.08 4.06 6.29 -2.91 -0.02 4.04 16 18 C 0.03 1.78 5.15 85.26 0.44 2.22 16 19 N -0.83 -44.52 11.08 21.83 0.24 -44.28 16 20 Si 0.97 39.33 29.59 68.60 2.03 41.36 16 21 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 22 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 23 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 24 C -0.19 -9.96 8.65 22.66 0.20 -9.76 16 25 C -0.11 -4.90 10.03 22.15 0.22 -4.68 16 26 C -0.22 -8.81 9.63 22.55 0.22 -8.59 16 27 C -0.08 -3.38 5.82 -19.84 -0.12 -3.49 16 28 C 0.17 5.35 6.06 85.65 0.52 5.87 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.03 0.86 8.10 -2.39 -0.02 0.84 16 31 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.16 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.42 1.71 9.10 -74.05 -0.67 1.04 16 35 H 0.40 8.36 6.26 -92.71 -0.58 7.78 16 36 H 0.08 3.12 7.10 -2.38 -0.02 3.10 16 37 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.07 3.08 6.44 -2.38 -0.02 3.07 16 40 H 0.28 13.85 8.30 -92.71 -0.77 13.08 16 41 H 0.09 5.12 6.36 -2.91 -0.02 5.10 16 42 H 0.11 4.31 8.06 -2.91 -0.02 4.28 16 43 H 0.13 3.96 8.05 -2.91 -0.02 3.94 16 44 H 0.10 2.48 5.97 -2.39 -0.01 2.47 16 45 H 0.09 2.40 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -76.88 368.71 2.46 -74.42 By element: Atomic # 1 Polarization: 31.98 SS G_CDS: -0.21 Total: 31.77 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 5.16 Total: -10.83 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -4.12 Total: -89.49 kcal Atomic # 8 Polarization: -46.83 SS G_CDS: -0.40 Total: -47.23 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -76.88 2.46 -74.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603127544.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.386 kcal (2) G-P(sol) polarization free energy of solvation -76.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds