Wall clock time and date at job start Tue Mar 31 2020 18:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47408 * 2 1 4 4 C 1.53003 * 109.47473 * 120.00889 * 2 1 3 5 5 C 1.50691 * 109.47235 * 185.00074 * 4 2 1 6 6 O 1.20827 * 120.00142 * 359.97438 * 5 4 2 7 7 O 1.34235 * 119.99719 * 179.97438 * 5 4 2 8 8 N 1.46509 * 109.46929 * 240.00281 * 2 1 3 9 9 C 1.34776 * 119.99787 * 85.00044 * 8 2 1 10 10 O 1.21585 * 120.00060 * 354.98689 * 9 8 2 11 11 N 1.34773 * 120.00077 * 174.99233 * 9 8 2 12 12 C 1.47240 * 121.34629 * 184.65408 * 11 9 8 13 13 C 1.53277 * 107.60422 * 116.01434 * 12 11 9 14 14 C 1.50567 * 110.85481 * 47.53804 * 13 12 11 15 15 C 1.41417 * 117.63574 * 160.30293 * 14 13 12 16 16 C 1.41396 * 119.96425 * 358.27398 * 15 14 13 17 17 H 1.08002 * 120.00090 * 328.16073 * 16 15 14 18 18 C 1.39944 * 120.00150 * 148.16475 * 16 15 14 19 19 N 1.30829 * 120.00081 * 167.36463 * 18 16 15 20 20 Si 1.86804 * 119.99841 * 347.37252 * 18 16 15 21 21 H 1.48497 * 109.47255 * 92.49217 * 20 18 16 22 22 H 1.48499 * 109.46761 * 212.49442 * 20 18 16 23 23 H 1.48501 * 109.46807 * 332.49053 * 20 18 16 24 24 C 1.40406 * 120.06788 * 178.31984 * 15 14 13 25 25 C 1.37644 * 119.53529 * 0.40017 * 24 15 14 26 26 C 1.38328 * 119.99375 * 0.17716 * 25 24 15 27 27 C 1.37047 * 122.99739 * 339.60268 * 14 13 12 28 28 C 1.46665 * 121.34591 * 4.92916 * 11 9 8 29 29 H 1.08996 * 109.46699 * 299.99241 * 1 2 3 30 30 H 1.09000 * 109.47204 * 59.99804 * 1 2 3 31 31 H 1.08998 * 109.47330 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47060 * 64.98947 * 4 2 1 33 33 H 1.09001 * 109.46529 * 304.99808 * 4 2 1 34 34 H 0.96707 * 116.99642 * 179.97438 * 7 5 4 35 35 H 0.96993 * 120.00240 * 264.99882 * 8 2 1 36 36 H 1.09006 * 109.78083 * 235.60020 * 12 11 9 37 37 H 1.08993 * 109.78425 * 356.41112 * 12 11 9 38 38 H 1.09001 * 109.30162 * 287.12531 * 13 12 11 39 39 H 1.09004 * 109.08221 * 167.80699 * 13 12 11 40 40 H 0.96993 * 119.99677 * 180.02562 * 19 18 16 41 41 H 1.07993 * 120.23170 * 180.43142 * 24 15 14 42 42 H 1.08008 * 119.99900 * 180.19760 * 25 24 15 43 43 H 1.08002 * 119.47370 * 179.82629 * 26 25 24 44 44 H 1.09007 * 109.42930 * 344.46150 * 28 11 9 45 45 H 1.09003 * 109.43060 * 104.35873 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5419 -0.6151 1.3126 6 8 4.1428 -0.0234 0.4472 7 8 4.2122 -1.1777 2.3305 8 7 2.0183 -0.6906 -1.1963 9 6 2.1470 -0.0182 -2.3572 10 8 1.7728 1.1360 -2.4359 11 7 2.6904 -0.6251 -3.4309 12 6 2.9382 0.1099 -4.6824 13 6 4.4529 0.1294 -4.9165 14 6 5.0415 -1.2441 -4.7321 15 6 6.3073 -1.4982 -5.3092 16 6 6.9566 -0.4907 -6.0592 17 1 6.3741 0.2216 -6.6247 18 6 8.3540 -0.4164 -6.0689 19 7 8.9627 0.3434 -6.9429 20 14 9.3503 -1.4025 -4.8342 21 1 9.7165 -2.7135 -5.4276 22 1 10.5850 -0.6550 -4.4848 23 1 8.5414 -1.6225 -3.6084 24 6 6.9196 -2.7502 -5.1388 25 6 6.2754 -3.7276 -4.4148 26 6 5.0321 -3.4741 -3.8640 27 6 4.4135 -2.2366 -4.0259 28 6 3.0534 -2.0458 -3.4018 29 1 -0.3632 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -1.7716 1.2054 33 1 1.6055 -0.2620 2.1369 34 1 5.1746 -1.0833 2.3278 35 1 2.2490 -1.6317 -1.1528 36 1 2.4411 -0.3945 -5.5110 37 1 2.5633 1.1293 -4.5920 38 1 4.9179 0.8164 -4.2094 39 1 4.6521 0.4713 -5.9321 40 1 9.9312 0.3945 -6.9499 41 1 7.8893 -2.9448 -5.5725 42 1 6.7409 -4.6924 -4.2764 43 1 4.5329 -4.2480 -3.2998 44 1 3.0765 -2.3931 -2.3687 45 1 2.3148 -2.6203 -3.9609 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603127546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:40 Heat of formation + Delta-G solvation = -98.963238 kcal Electronic energy + Delta-G solvation = -29241.653108 eV Core-core repulsion = 25223.645396 eV Total energy + Delta-G solvation = -4018.007713 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.65629 -39.94482 -38.44105 -36.64919 -35.86970 -35.24732 -33.66286 -32.52412 -31.27862 -30.40070 -29.00324 -28.56753 -25.33972 -24.93641 -23.42343 -22.61840 -21.02973 -20.70840 -20.31391 -19.07098 -18.16799 -17.53714 -17.19882 -16.72018 -16.61645 -15.88828 -15.64734 -15.32044 -14.69802 -14.38105 -14.23872 -14.01320 -13.78097 -13.46808 -13.24676 -13.02611 -12.85359 -12.72933 -12.67795 -12.33389 -12.12747 -11.95655 -11.74598 -11.62084 -11.58593 -11.38253 -11.19900 -10.95752 -10.80486 -10.66781 -10.52287 -10.07506 -9.87377 -9.73921 -9.45194 -9.15886 -9.03550 -8.15767 -7.54163 -7.51884 -6.91957 -4.49688 2.08033 2.51330 2.56284 2.80717 2.83909 3.09722 3.21296 3.31618 3.52578 3.98155 4.05599 4.28813 4.45667 4.74471 4.88045 5.13866 5.21349 5.22149 5.28903 5.30196 5.50789 5.53783 5.68643 5.76673 5.82565 5.85530 5.93692 6.05553 6.06373 6.19551 6.36861 6.39714 6.53005 6.58458 6.59956 6.77521 6.85353 6.96580 7.14565 7.22696 7.41602 7.61570 7.64641 7.74819 7.84578 8.01998 8.21309 8.34749 8.61985 8.78950 8.86729 10.10195 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013437 B = 0.003831 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.236519 B = 7306.918213 C = 8001.425811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.171 3.829 3 H 0.097 0.903 4 C -0.122 4.122 5 C 0.465 3.535 6 O -0.488 6.488 7 O -0.524 6.524 8 N -0.741 5.741 9 C 0.720 3.280 10 O -0.596 6.596 11 N -0.622 5.622 12 C 0.131 3.869 13 C -0.072 4.072 14 C -0.148 4.148 15 C 0.094 3.906 16 C -0.444 4.444 17 H 0.095 0.905 18 C 0.083 3.917 19 N -0.813 5.813 20 Si 0.914 3.086 21 H -0.272 1.272 22 H -0.294 1.294 23 H -0.245 1.245 24 C -0.240 4.240 25 C -0.078 4.078 26 C -0.237 4.237 27 C -0.070 4.070 28 C 0.164 3.836 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.411 0.589 35 H 0.392 0.608 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.285 0.715 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.070 0.930 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.555 -5.064 15.162 20.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.066 3.934 3 H 0.115 0.885 4 C -0.160 4.160 5 C 0.306 3.694 6 O -0.374 6.374 7 O -0.337 6.337 8 N -0.398 5.398 9 C 0.422 3.578 10 O -0.475 6.475 11 N -0.358 5.358 12 C 0.008 3.992 13 C -0.110 4.110 14 C -0.149 4.149 15 C 0.091 3.909 16 C -0.473 4.473 17 H 0.113 0.887 18 C -0.135 4.135 19 N -0.438 5.438 20 Si 0.741 3.259 21 H -0.198 1.198 22 H -0.222 1.222 23 H -0.169 1.169 24 C -0.260 4.260 25 C -0.097 4.097 26 C -0.257 4.257 27 C -0.071 4.071 28 C 0.040 3.960 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.128 0.872 33 H 0.138 0.862 34 H 0.270 0.730 35 H 0.227 0.773 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.118 0.882 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.088 0.912 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.870 -3.894 14.711 19.931 hybrid contribution 1.659 -1.060 0.486 2.028 sum -11.211 -4.954 15.197 19.524 Atomic orbital electron populations 1.22196 0.94389 1.02311 1.03162 1.20551 0.93764 0.97691 0.81439 0.88546 1.21759 0.88141 1.04896 1.01224 1.23423 0.91688 0.75664 0.78645 1.90880 1.70082 1.38546 1.37862 1.84491 1.27336 1.73074 1.48771 1.45161 1.72358 1.13395 1.08857 1.15586 0.78088 0.84236 0.79883 1.90860 1.56570 1.16419 1.83619 1.47192 1.64638 1.10882 1.13103 1.21695 0.96694 0.97226 0.83563 1.20579 0.92678 0.95377 1.02380 1.19279 0.97845 0.94363 1.03426 1.17743 0.91493 0.92007 0.89689 1.19527 0.91409 1.12509 1.23845 0.88707 1.26117 0.98428 0.94020 0.94913 1.69650 1.11466 1.32834 1.29838 0.86300 0.78106 0.78651 0.82826 1.19824 1.22155 1.16884 1.20966 1.01699 0.94638 1.08650 1.20468 0.94852 0.97341 0.97009 1.20168 0.98077 0.96726 1.10691 1.19192 0.94233 0.94492 0.99161 1.20298 0.94745 0.81267 0.99651 0.91568 0.91015 0.92352 0.87224 0.86159 0.72951 0.77254 0.91637 0.89253 0.91697 0.90076 0.90506 0.88215 0.88828 0.88969 0.91208 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.48 37.16 0.35 -1.01 16 2 C 0.17 1.82 2.10 -67.92 -0.14 1.68 16 3 H 0.10 1.31 7.47 -51.93 -0.39 0.92 16 4 C -0.12 -0.90 5.35 -27.89 -0.15 -1.05 16 5 C 0.47 5.01 8.19 36.00 0.29 5.30 16 6 O -0.49 -7.77 16.11 -18.75 -0.30 -8.07 16 7 O -0.52 -4.44 13.42 -39.27 -0.53 -4.97 16 8 N -0.74 -9.77 4.13 -58.67 -0.24 -10.01 16 9 C 0.72 12.52 8.28 -86.92 -0.72 11.80 16 10 O -0.60 -12.12 15.51 5.29 0.08 -12.04 16 11 N -0.62 -10.79 2.93 -179.80 -0.53 -11.31 16 12 C 0.13 2.34 6.48 -3.49 -0.02 2.31 16 13 C -0.07 -1.51 5.30 -27.80 -0.15 -1.65 16 14 C -0.15 -3.35 5.82 -103.91 -0.60 -3.96 16 15 C 0.09 2.34 5.13 -106.67 -0.55 1.80 16 16 C -0.44 -11.84 8.80 -37.74 -0.33 -12.18 16 17 H 0.10 2.61 6.56 -52.49 -0.34 2.27 16 18 C 0.08 2.19 5.46 -17.34 -0.09 2.10 16 19 N -0.81 -21.82 13.93 55.55 0.77 -21.04 16 20 Si 0.91 21.30 24.42 -169.99 -4.15 17.15 16 21 H -0.27 -6.11 6.66 56.52 0.38 -5.73 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.25 -5.95 6.72 56.52 0.38 -5.57 16 24 C -0.24 -5.75 7.02 -38.98 -0.27 -6.03 16 25 C -0.08 -1.66 10.03 -39.76 -0.40 -2.06 16 26 C -0.24 -4.66 9.63 -39.16 -0.38 -5.04 16 27 C -0.07 -1.40 5.82 -104.59 -0.61 -2.01 16 28 C 0.16 2.61 6.15 -5.03 -0.03 2.58 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.41 2.31 9.10 45.56 0.41 2.73 16 35 H 0.39 4.46 6.19 -40.82 -0.25 4.21 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.61 7.07 -51.93 -0.37 1.24 16 38 H 0.06 1.46 8.14 -51.93 -0.42 1.03 16 39 H 0.08 1.69 6.46 -51.93 -0.34 1.36 16 40 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 41 H 0.10 2.40 4.47 -52.49 -0.23 2.17 16 42 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 43 H 0.09 1.53 8.05 -52.49 -0.42 1.10 16 44 H 0.07 0.96 5.81 -51.93 -0.30 0.66 16 45 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 362.60 15.07 5.46 5.46 Total: -1.00 -33.93 362.60 -8.44 -42.37 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -5.21 Total: 9.88 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -3.80 Total: -7.42 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.00 Total: -42.37 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.75 Total: -25.08 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.15 Total: 17.15 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.93 -8.44 -42.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603127546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.593 kcal (2) G-P(sol) polarization free energy of solvation -33.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds