Wall clock time and date at job start Tue Mar 31 2020 18:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47408 * 2 1 4 4 C 1.53003 * 109.47473 * 120.00889 * 2 1 3 5 5 C 1.50691 * 109.47235 * 185.00074 * 4 2 1 6 6 O 1.20827 * 120.00142 * 359.97438 * 5 4 2 7 7 O 1.34235 * 119.99719 * 179.97438 * 5 4 2 8 8 N 1.46509 * 109.46929 * 240.00281 * 2 1 3 9 9 C 1.34776 * 119.99787 * 85.00044 * 8 2 1 10 10 O 1.21585 * 120.00060 * 354.98689 * 9 8 2 11 11 N 1.34773 * 120.00077 * 174.99233 * 9 8 2 12 12 C 1.47240 * 121.34629 * 184.65408 * 11 9 8 13 13 C 1.53277 * 107.60422 * 116.01434 * 12 11 9 14 14 C 1.50567 * 110.85481 * 47.53804 * 13 12 11 15 15 C 1.41417 * 117.63574 * 160.30293 * 14 13 12 16 16 C 1.41396 * 119.96425 * 358.27398 * 15 14 13 17 17 H 1.08002 * 120.00090 * 328.16073 * 16 15 14 18 18 C 1.39944 * 120.00150 * 148.16475 * 16 15 14 19 19 N 1.30829 * 120.00081 * 167.36463 * 18 16 15 20 20 Si 1.86804 * 119.99841 * 347.37252 * 18 16 15 21 21 H 1.48497 * 109.47255 * 92.49217 * 20 18 16 22 22 H 1.48499 * 109.46761 * 212.49442 * 20 18 16 23 23 H 1.48501 * 109.46807 * 332.49053 * 20 18 16 24 24 C 1.40406 * 120.06788 * 178.31984 * 15 14 13 25 25 C 1.37644 * 119.53529 * 0.40017 * 24 15 14 26 26 C 1.38328 * 119.99375 * 0.17716 * 25 24 15 27 27 C 1.37047 * 122.99739 * 339.60268 * 14 13 12 28 28 C 1.46665 * 121.34591 * 4.92916 * 11 9 8 29 29 H 1.08996 * 109.46699 * 299.99241 * 1 2 3 30 30 H 1.09000 * 109.47204 * 59.99804 * 1 2 3 31 31 H 1.08998 * 109.47330 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47060 * 64.98947 * 4 2 1 33 33 H 1.09001 * 109.46529 * 304.99808 * 4 2 1 34 34 H 0.96707 * 116.99642 * 179.97438 * 7 5 4 35 35 H 0.96993 * 120.00240 * 264.99882 * 8 2 1 36 36 H 1.09006 * 109.78083 * 235.60020 * 12 11 9 37 37 H 1.08993 * 109.78425 * 356.41112 * 12 11 9 38 38 H 1.09001 * 109.30162 * 287.12531 * 13 12 11 39 39 H 1.09004 * 109.08221 * 167.80699 * 13 12 11 40 40 H 0.96993 * 119.99677 * 180.02562 * 19 18 16 41 41 H 1.07993 * 120.23170 * 180.43142 * 24 15 14 42 42 H 1.08008 * 119.99900 * 180.19760 * 25 24 15 43 43 H 1.08002 * 119.47370 * 179.82629 * 26 25 24 44 44 H 1.09007 * 109.42930 * 344.46150 * 28 11 9 45 45 H 1.09003 * 109.43060 * 104.35873 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5419 -0.6151 1.3126 6 8 4.1428 -0.0234 0.4472 7 8 4.2122 -1.1777 2.3305 8 7 2.0183 -0.6906 -1.1963 9 6 2.1470 -0.0182 -2.3572 10 8 1.7728 1.1360 -2.4359 11 7 2.6904 -0.6251 -3.4309 12 6 2.9382 0.1099 -4.6824 13 6 4.4529 0.1294 -4.9165 14 6 5.0415 -1.2441 -4.7321 15 6 6.3073 -1.4982 -5.3092 16 6 6.9566 -0.4907 -6.0592 17 1 6.3741 0.2216 -6.6247 18 6 8.3540 -0.4164 -6.0689 19 7 8.9627 0.3434 -6.9429 20 14 9.3503 -1.4025 -4.8342 21 1 9.7165 -2.7135 -5.4276 22 1 10.5850 -0.6550 -4.4848 23 1 8.5414 -1.6225 -3.6084 24 6 6.9196 -2.7502 -5.1388 25 6 6.2754 -3.7276 -4.4148 26 6 5.0321 -3.4741 -3.8640 27 6 4.4135 -2.2366 -4.0259 28 6 3.0534 -2.0458 -3.4018 29 1 -0.3632 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -1.7716 1.2054 33 1 1.6055 -0.2620 2.1369 34 1 5.1746 -1.0833 2.3278 35 1 2.2490 -1.6317 -1.1528 36 1 2.4411 -0.3945 -5.5110 37 1 2.5633 1.1293 -4.5920 38 1 4.9179 0.8164 -4.2094 39 1 4.6521 0.4713 -5.9321 40 1 9.9312 0.3945 -6.9499 41 1 7.8893 -2.9448 -5.5725 42 1 6.7409 -4.6924 -4.2764 43 1 4.5329 -4.2480 -3.2998 44 1 3.0765 -2.3931 -2.3687 45 1 2.3148 -2.6203 -3.9609 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603127546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:39 Heat of formation + Delta-G solvation = -122.862016 kcal Electronic energy + Delta-G solvation = -29242.689437 eV Core-core repulsion = 25223.645396 eV Total energy + Delta-G solvation = -4019.044041 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.72730 -41.08722 -39.98852 -37.63387 -37.00826 -36.51764 -35.50316 -33.99485 -32.73082 -31.84495 -30.54877 -29.29087 -27.02413 -26.54462 -24.77144 -23.66424 -22.43153 -22.17347 -21.47488 -20.46518 -19.09680 -18.97259 -18.78804 -17.78645 -17.54504 -17.41475 -16.83680 -16.73048 -16.22896 -15.87073 -15.57684 -15.48159 -14.99211 -14.86073 -14.61871 -14.54692 -14.21273 -13.85115 -13.65782 -13.41331 -13.36285 -13.22367 -13.17744 -12.98092 -12.84039 -12.65449 -12.61295 -12.47482 -12.26555 -11.97572 -11.79198 -11.63639 -11.56753 -11.30222 -11.18821 -10.97733 -10.20228 -9.54254 -9.31777 -9.19954 -8.86989 -6.48746 0.77580 0.78730 1.20202 1.29246 1.35599 1.42780 1.62792 2.08371 2.16199 2.22474 2.59766 2.93786 3.41669 3.57453 3.86105 4.04461 4.11490 4.19706 4.24284 4.27038 4.38610 4.48285 4.51498 4.55397 4.62638 4.68071 4.69708 4.77634 4.88128 4.90853 4.92746 5.04625 5.11782 5.13869 5.28662 5.39530 5.47735 5.61108 5.65559 5.69529 5.82676 5.90268 5.98795 6.02087 6.26662 6.41960 6.76246 6.84732 6.98359 7.03282 7.58264 8.21445 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013437 B = 0.003831 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.236519 B = 7306.918213 C = 8001.425811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.165 3.835 3 H 0.057 0.943 4 C -0.111 4.111 5 C 0.468 3.532 6 O -0.552 6.552 7 O -0.515 6.515 8 N -0.726 5.726 9 C 0.712 3.288 10 O -0.634 6.634 11 N -0.628 5.628 12 C 0.140 3.860 13 C -0.065 4.065 14 C -0.167 4.167 15 C 0.068 3.932 16 C -0.478 4.478 17 H 0.062 0.938 18 C 0.044 3.956 19 N -0.860 5.860 20 Si 0.967 3.033 21 H -0.256 1.256 22 H -0.285 1.285 23 H -0.260 1.260 24 C -0.256 4.256 25 C -0.087 4.087 26 C -0.211 4.211 27 C -0.073 4.073 28 C 0.165 3.835 29 H 0.092 0.908 30 H 0.038 0.962 31 H 0.083 0.917 32 H 0.147 0.853 33 H 0.157 0.843 34 H 0.423 0.577 35 H 0.403 0.597 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.034 0.966 39 H 0.065 0.935 40 H 0.290 0.710 41 H 0.093 0.907 42 H 0.129 0.871 43 H 0.142 0.858 44 H 0.102 0.898 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.018 -9.151 18.796 25.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.060 3.940 3 H 0.075 0.925 4 C -0.148 4.148 5 C 0.312 3.688 6 O -0.442 6.442 7 O -0.328 6.328 8 N -0.383 5.383 9 C 0.414 3.586 10 O -0.516 6.516 11 N -0.363 5.363 12 C 0.017 3.983 13 C -0.103 4.103 14 C -0.169 4.169 15 C 0.066 3.934 16 C -0.508 4.508 17 H 0.080 0.920 18 C -0.169 4.169 19 N -0.487 5.487 20 Si 0.792 3.208 21 H -0.181 1.181 22 H -0.213 1.213 23 H -0.184 1.184 24 C -0.276 4.276 25 C -0.105 4.105 26 C -0.230 4.230 27 C -0.074 4.074 28 C 0.043 3.957 29 H 0.110 0.890 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.164 0.836 33 H 0.175 0.825 34 H 0.284 0.716 35 H 0.241 0.759 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.053 0.947 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.147 0.853 43 H 0.160 0.840 44 H 0.119 0.881 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.340 -8.040 18.400 25.269 hybrid contribution 2.238 0.092 -0.469 2.289 sum -13.102 -7.948 17.931 23.587 Atomic orbital electron populations 1.22109 0.92284 1.03798 1.02874 1.20732 0.95306 0.96117 0.81877 0.92464 1.21854 0.85550 1.06896 1.00529 1.24120 0.93005 0.73984 0.77687 1.90881 1.71552 1.41451 1.40326 1.84473 1.28484 1.72177 1.47679 1.45121 1.71287 1.13805 1.08104 1.15841 0.78018 0.83966 0.80766 1.90832 1.58192 1.18277 1.84304 1.47211 1.64760 1.11559 1.12818 1.21507 0.94147 0.97631 0.85011 1.20442 0.94906 0.94329 1.00604 1.19582 0.97534 0.95696 1.04051 1.17945 0.92818 0.92267 0.90379 1.19510 0.91925 1.13507 1.25896 0.91984 1.26744 0.99020 0.94957 0.96187 1.69694 1.11966 1.35271 1.31800 0.85487 0.76825 0.78274 0.80197 1.18137 1.21271 1.18408 1.21113 1.01873 0.94999 1.09582 1.20923 0.95475 0.98032 0.96051 1.20786 0.96994 0.97137 1.08113 1.19724 0.96035 0.93941 0.97673 1.20521 0.92821 0.80710 1.01642 0.88956 0.94273 0.89853 0.83566 0.82543 0.71637 0.75879 0.89498 0.90009 0.94734 0.91673 0.89959 0.88940 0.85320 0.83995 0.88064 0.87977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.48 71.98 0.68 -1.40 16 2 C 0.16 3.10 2.10 44.99 0.09 3.20 16 3 H 0.06 1.56 7.47 -2.39 -0.02 1.54 16 4 C -0.11 -1.14 5.35 29.85 0.16 -0.98 16 5 C 0.47 8.81 8.19 71.23 0.58 9.39 16 6 O -0.55 -17.21 16.11 21.96 0.35 -16.86 16 7 O -0.51 -7.05 13.42 -51.47 -0.69 -7.75 16 8 N -0.73 -17.27 4.13 -457.80 -1.89 -19.17 16 9 C 0.71 24.11 8.28 179.06 1.48 25.60 16 10 O -0.63 -26.35 15.51 -3.98 -0.06 -26.41 16 11 N -0.63 -20.80 2.93 -841.04 -2.46 -23.26 16 12 C 0.14 5.07 6.48 86.33 0.56 5.63 16 13 C -0.06 -2.86 5.30 29.90 0.16 -2.70 16 14 C -0.17 -7.67 5.82 -19.40 -0.11 -7.78 16 15 C 0.07 3.52 5.13 -21.19 -0.11 3.41 16 16 C -0.48 -27.43 8.80 23.46 0.21 -27.22 16 17 H 0.06 3.80 6.56 -2.91 -0.02 3.79 16 18 C 0.04 2.43 5.46 85.26 0.47 2.90 16 19 N -0.86 -49.20 13.93 21.83 0.30 -48.90 16 20 Si 0.97 45.30 24.42 68.60 1.68 46.98 16 21 H -0.26 -11.16 6.66 99.48 0.66 -10.50 16 22 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.26 -12.58 6.72 99.48 0.67 -11.91 16 24 C -0.26 -12.12 7.02 22.66 0.16 -11.96 16 25 C -0.09 -3.36 10.03 22.15 0.22 -3.14 16 26 C -0.21 -7.23 9.63 22.54 0.22 -7.01 16 27 C -0.07 -2.71 5.82 -19.84 -0.12 -2.82 16 28 C 0.17 4.56 6.15 85.65 0.53 5.09 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.04 0.81 8.10 -2.39 -0.02 0.79 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.15 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.16 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.42 3.77 9.10 -74.05 -0.67 3.09 16 35 H 0.40 7.39 6.19 -92.71 -0.57 6.81 16 36 H 0.09 2.76 8.14 -2.38 -0.02 2.74 16 37 H 0.08 3.07 7.07 -2.39 -0.02 3.06 16 38 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.06 3.01 6.46 -2.38 -0.02 3.00 16 40 H 0.29 15.06 8.30 -92.71 -0.77 14.29 16 41 H 0.09 4.44 4.47 -2.91 -0.01 4.42 16 42 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 43 H 0.14 3.55 8.05 -2.91 -0.02 3.52 16 44 H 0.10 2.19 5.81 -2.38 -0.01 2.17 16 45 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -81.97 362.60 2.13 -79.84 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -0.28 Total: 25.30 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 5.18 Total: -9.79 kcal Atomic # 7 Polarization: -87.27 SS G_CDS: -4.05 Total: -91.32 kcal Atomic # 8 Polarization: -50.61 SS G_CDS: -0.40 Total: -51.01 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.68 Total: 46.98 kcal Total: -81.97 2.13 -79.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603127546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.020 kcal (2) G-P(sol) polarization free energy of solvation -81.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds