Wall clock time and date at job start Tue Mar 31 2020 17:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.87036 * 2 1 4 4 C 1.54326 * 109.88003 * 121.17416 * 2 1 3 5 5 H 1.08998 * 110.71932 * 215.58570 * 4 2 1 6 6 C 1.50700 * 110.72177 * 338.86044 * 4 2 1 7 7 O 1.20833 * 119.99779 * 90.74936 * 6 4 2 8 8 O 1.34222 * 120.00126 * 270.74846 * 6 4 2 9 9 C 1.55157 * 102.93977 * 97.22574 * 4 2 1 10 10 C 1.54902 * 101.58521 * 35.50019 * 9 4 2 11 11 N 1.47019 * 109.88084 * 238.98226 * 2 1 3 12 12 C 1.34780 * 125.65178 * 59.56156 * 11 2 1 13 13 O 1.21591 * 119.99278 * 359.97438 * 12 11 2 14 14 N 1.34771 * 120.00277 * 179.97438 * 12 11 2 15 15 C 1.46501 * 120.00133 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47146 * 179.97438 * 15 14 12 17 17 C 1.38628 * 119.75155 * 269.72709 * 16 15 14 18 18 C 1.37624 * 120.24760 * 179.72624 * 17 16 15 19 19 C 1.40717 * 119.74394 * 0.52324 * 18 17 16 20 20 C 1.41390 * 120.24378 * 179.73060 * 19 18 17 21 21 H 1.07998 * 120.00153 * 207.85088 * 20 19 18 22 22 C 1.39945 * 120.00247 * 27.84916 * 20 19 18 23 23 N 1.30819 * 120.00161 * 14.42607 * 22 20 19 24 24 Si 1.86805 * 120.00097 * 194.42894 * 22 20 19 25 25 H 1.48497 * 109.47134 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47053 * 119.99895 * 24 22 20 27 27 H 1.48505 * 109.46997 * 239.99778 * 24 22 20 28 28 C 1.40713 * 119.50961 * 359.74965 * 19 18 17 29 29 C 1.37616 * 119.75015 * 0.02562 * 28 19 18 30 30 H 1.09003 * 109.47017 * 181.30821 * 1 2 3 31 31 H 1.09004 * 109.47198 * 61.31291 * 1 2 3 32 32 H 1.09000 * 109.47028 * 301.31338 * 1 2 3 33 33 H 0.96697 * 116.99923 * 179.97438 * 8 6 4 34 34 H 1.08998 * 111.00354 * 277.42174 * 9 4 2 35 35 H 1.08996 * 111.03505 * 153.59184 * 9 4 2 36 36 H 1.09002 * 110.37183 * 204.15012 * 10 9 4 37 37 H 1.09004 * 110.46203 * 81.87549 * 10 9 4 38 38 H 0.96997 * 120.00024 * 359.97438 * 14 12 11 39 39 H 1.08997 * 109.46763 * 300.00334 * 15 14 12 40 40 H 1.09000 * 109.47001 * 59.99932 * 15 14 12 41 41 H 1.08002 * 119.87471 * 359.97438 * 17 16 15 42 42 H 1.07995 * 120.12746 * 180.28212 * 18 17 16 43 43 H 0.97000 * 120.00850 * 180.02562 * 23 22 20 44 44 H 1.08005 * 120.12437 * 180.02562 * 28 19 18 45 45 H 1.07998 * 119.88176 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7513 1.2417 5 1 2.9656 -0.2854 1.6179 6 6 0.9998 -0.8073 2.3164 7 8 0.2306 -1.7382 2.3599 8 8 0.9146 0.1767 3.2252 9 6 2.3518 -2.1704 0.6894 10 6 2.8568 -1.8488 -0.7393 11 7 2.0300 -0.7124 -1.1849 12 6 1.7754 -0.3811 -2.4663 13 8 1.0767 0.5817 -2.7178 14 7 2.2951 -1.1170 -3.4686 15 6 2.0187 -0.7565 -4.8614 16 6 2.7119 -1.7302 -5.7793 17 6 4.0017 -1.4669 -6.2140 18 6 4.6464 -2.3518 -7.0478 19 6 3.9873 -3.5220 -7.4679 20 6 4.6376 -4.4355 -8.3291 21 1 4.0572 -5.0551 -8.9967 22 6 6.0333 -4.5369 -8.3166 23 7 6.7185 -4.0108 -7.3342 24 14 6.9179 -5.4232 -9.7027 25 1 5.9228 -5.9251 -10.6840 26 1 7.8483 -4.4828 -10.3774 27 1 7.6860 -6.5669 -9.1482 28 6 2.6761 -3.7759 -7.0250 29 6 2.0525 -2.8793 -6.1876 30 1 -0.3633 -1.0274 0.0235 31 1 -0.3634 0.4933 -0.9015 32 1 -0.3633 0.5341 0.8780 33 1 0.2216 0.0970 3.8949 34 1 1.4452 -2.7745 0.6566 35 1 3.1267 -2.6642 1.2757 36 1 2.7088 -2.7062 -1.3960 37 1 3.9093 -1.5664 -0.7168 38 1 2.8527 -1.8848 -3.2679 39 1 0.9439 -0.7910 -5.0392 40 1 2.3870 0.2508 -5.0559 41 1 4.5039 -0.5660 -5.8938 42 1 5.6529 -2.1471 -7.3816 43 1 7.6860 -4.0807 -7.3256 44 1 2.1610 -4.6711 -7.3409 45 1 1.0460 -3.0719 -5.8467 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604633083.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:56 Heat of formation + Delta-G solvation = -104.410806 kcal Electronic energy + Delta-G solvation = -27841.000798 eV Core-core repulsion = 23822.756861 eV Total energy + Delta-G solvation = -4018.243937 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.25844 -39.89088 -38.04488 -37.39707 -36.39409 -34.71749 -33.51114 -32.19143 -31.42494 -30.11846 -29.37691 -27.18276 -26.57901 -24.22016 -23.42359 -22.90474 -21.09420 -20.43210 -20.07538 -19.63311 -18.46816 -18.01082 -17.39257 -17.10604 -16.33528 -15.83165 -15.70916 -15.41671 -14.71569 -14.55872 -14.12915 -13.94232 -13.70705 -13.62755 -13.43490 -13.16296 -12.85648 -12.66403 -12.51750 -12.39731 -12.06209 -11.96704 -11.86124 -11.79194 -11.67897 -11.26952 -11.20076 -11.17224 -11.04663 -10.80583 -10.71376 -10.45126 -9.95859 -9.69247 -9.48573 -9.28498 -8.89953 -8.41680 -7.58684 -7.43953 -6.85335 -4.48477 1.77429 2.34326 2.60293 2.88216 2.96302 3.02242 3.07236 3.13617 3.40349 3.85799 3.92736 4.05446 4.32123 4.57051 4.61885 4.75775 4.90712 4.95556 5.12348 5.27558 5.34999 5.43536 5.50940 5.57651 5.71938 5.79133 5.83662 5.93205 6.04297 6.14334 6.22654 6.23336 6.33262 6.35033 6.85082 6.90047 6.98184 7.12658 7.18173 7.24822 7.50459 7.51053 7.71414 7.95008 7.99067 8.18051 8.21567 8.52995 8.78249 8.81282 8.84942 10.09316 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022918 B = 0.002191 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.433520 B =12774.757727 C =13342.696022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.174 3.826 3 H 0.087 0.913 4 C -0.097 4.097 5 H 0.119 0.881 6 C 0.497 3.503 7 O -0.507 6.507 8 O -0.515 6.515 9 C -0.118 4.118 10 C 0.099 3.901 11 N -0.637 5.637 12 C 0.720 3.280 13 O -0.594 6.594 14 N -0.731 5.731 15 C 0.202 3.798 16 C -0.241 4.241 17 C -0.082 4.082 18 C -0.164 4.164 19 C 0.117 3.883 20 C -0.460 4.460 21 H 0.079 0.921 22 C 0.074 3.926 23 N -0.793 5.793 24 Si 0.909 3.091 25 H -0.260 1.260 26 H -0.272 1.272 27 H -0.274 1.274 28 C -0.226 4.226 29 C -0.071 4.071 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.411 0.589 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.397 0.603 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.088 0.912 42 H 0.117 0.883 43 H 0.281 0.719 44 H 0.093 0.907 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.209 4.798 17.464 18.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.069 3.931 3 H 0.105 0.895 4 C -0.117 4.117 5 H 0.137 0.863 6 C 0.338 3.662 7 O -0.395 6.395 8 O -0.327 6.327 9 C -0.156 4.156 10 C -0.025 4.025 11 N -0.377 5.377 12 C 0.423 3.577 13 O -0.473 6.473 14 N -0.385 5.385 15 C 0.080 3.920 16 C -0.242 4.242 17 C -0.101 4.101 18 C -0.184 4.184 19 C 0.114 3.886 20 C -0.489 4.489 21 H 0.097 0.903 22 C -0.143 4.143 23 N -0.419 5.419 24 Si 0.734 3.266 25 H -0.184 1.184 26 H -0.197 1.197 27 H -0.199 1.199 28 C -0.246 4.246 29 C -0.090 4.090 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.270 0.730 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.231 0.769 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.107 0.893 42 H 0.135 0.865 43 H 0.092 0.908 44 H 0.111 0.889 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.409 5.338 16.933 18.293 hybrid contribution 0.410 -0.923 0.099 1.015 sum -3.999 4.414 17.032 18.043 Atomic orbital electron populations 1.22356 0.94517 1.03050 1.03408 1.21034 0.94837 0.95489 0.81709 0.89545 1.22143 0.97342 1.00253 0.91956 0.86276 1.22868 0.83715 0.78906 0.80670 1.90740 1.41597 1.34515 1.72615 1.84549 1.57671 1.48885 1.41608 1.22842 1.03598 0.93997 0.95144 1.22318 0.95306 0.89799 0.95030 1.47598 1.54449 1.31901 1.03780 1.15540 0.80436 0.82790 0.78984 1.90879 1.43655 1.30175 1.82555 1.45750 1.54547 1.32526 1.05678 1.19832 0.98461 0.96753 0.76933 1.19017 0.96937 0.99612 1.08677 1.20575 0.93604 0.97960 0.97959 1.21298 1.00644 0.94259 1.02151 1.17684 0.90730 0.90938 0.89215 1.19672 0.91275 1.18977 1.18984 0.90290 1.25924 0.98039 0.94625 0.95740 1.69801 1.08686 1.35759 1.27626 0.86239 0.79577 0.79428 0.81379 1.18379 1.19665 1.19943 1.21022 0.98032 1.00297 1.05246 1.20428 0.97256 0.93887 0.97421 0.91702 0.89708 0.92356 0.73018 0.88592 0.88882 0.89874 0.90742 0.76879 0.92562 0.92477 0.89337 0.86478 0.90838 0.88857 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 8.10 37.16 0.30 -1.77 16 2 C 0.17 1.89 3.43 -66.95 -0.23 1.66 16 3 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 4 C -0.10 -0.78 3.38 -89.94 -0.30 -1.09 16 5 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 6 C 0.50 4.33 5.41 36.01 0.19 4.53 16 7 O -0.51 -5.86 15.84 -18.76 -0.30 -6.16 16 8 O -0.52 -3.28 13.42 -39.24 -0.53 -3.81 16 9 C -0.12 -0.94 6.38 -24.59 -0.16 -1.10 16 10 C 0.10 0.94 6.57 -2.53 -0.02 0.92 16 11 N -0.64 -8.06 3.08 -168.69 -0.52 -8.58 16 12 C 0.72 11.81 8.27 -86.92 -0.72 11.09 16 13 O -0.59 -11.64 15.21 5.29 0.08 -11.55 16 14 N -0.73 -11.88 5.51 -66.42 -0.37 -12.25 16 15 C 0.20 3.66 5.79 -5.19 -0.03 3.63 16 16 C -0.24 -4.89 5.27 -104.33 -0.55 -5.44 16 17 C -0.08 -1.79 9.67 -39.66 -0.38 -2.18 16 18 C -0.16 -4.03 8.67 -38.87 -0.34 -4.37 16 19 C 0.12 2.97 5.55 -106.83 -0.59 2.38 16 20 C -0.46 -11.69 9.05 -37.74 -0.34 -12.03 16 21 H 0.08 1.94 7.89 -52.49 -0.41 1.53 16 22 C 0.07 1.79 5.19 -17.34 -0.09 1.70 16 23 N -0.79 -19.60 10.98 55.55 0.61 -18.99 16 24 Si 0.91 17.98 29.58 -169.99 -5.03 12.95 16 25 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 26 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 27 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 28 C -0.23 -5.27 9.80 -38.87 -0.38 -5.65 16 29 C -0.07 -1.50 9.67 -39.66 -0.38 -1.88 16 30 H 0.06 0.83 7.57 -51.93 -0.39 0.43 16 31 H 0.08 1.21 6.69 -51.93 -0.35 0.86 16 32 H 0.06 0.59 7.16 -51.93 -0.37 0.22 16 33 H 0.41 0.97 9.10 45.56 0.41 1.38 16 34 H 0.10 0.92 7.22 -51.93 -0.37 0.55 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.80 7.30 -51.93 -0.38 0.42 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.40 6.02 6.94 -40.82 -0.28 5.74 16 39 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 40 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 41 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 42 H 0.12 3.00 6.29 -52.49 -0.33 2.67 16 43 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 44 H 0.09 2.06 8.06 -52.48 -0.42 1.64 16 45 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 372.51 15.07 5.61 5.61 Total: -1.00 -30.69 372.51 -9.86 -40.56 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -5.41 Total: 11.81 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -4.02 Total: -9.60 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: -0.28 Total: -39.82 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.74 Total: -21.52 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.69 -9.86 -40.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604633083.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.853 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds