Wall clock time and date at job start Tue Mar 31 2020 17:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.87036 * 2 1 4 4 C 1.54326 * 109.88003 * 121.17416 * 2 1 3 5 5 H 1.08998 * 110.71932 * 215.58570 * 4 2 1 6 6 C 1.50700 * 110.72177 * 338.86044 * 4 2 1 7 7 O 1.20833 * 119.99779 * 90.74936 * 6 4 2 8 8 O 1.34222 * 120.00126 * 270.74846 * 6 4 2 9 9 C 1.55157 * 102.93977 * 97.22574 * 4 2 1 10 10 C 1.54902 * 101.58521 * 35.50019 * 9 4 2 11 11 N 1.47019 * 109.88084 * 238.98226 * 2 1 3 12 12 C 1.34780 * 125.65178 * 59.56156 * 11 2 1 13 13 O 1.21591 * 119.99278 * 359.97438 * 12 11 2 14 14 N 1.34771 * 120.00277 * 179.97438 * 12 11 2 15 15 C 1.46501 * 120.00133 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47146 * 179.97438 * 15 14 12 17 17 C 1.38628 * 119.75155 * 269.72709 * 16 15 14 18 18 C 1.37624 * 120.24760 * 179.72624 * 17 16 15 19 19 C 1.40717 * 119.74394 * 0.52324 * 18 17 16 20 20 C 1.41390 * 120.24378 * 179.73060 * 19 18 17 21 21 H 1.07998 * 120.00153 * 207.85088 * 20 19 18 22 22 C 1.39945 * 120.00247 * 27.84916 * 20 19 18 23 23 N 1.30819 * 120.00161 * 14.42607 * 22 20 19 24 24 Si 1.86805 * 120.00097 * 194.42894 * 22 20 19 25 25 H 1.48497 * 109.47134 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47053 * 119.99895 * 24 22 20 27 27 H 1.48505 * 109.46997 * 239.99778 * 24 22 20 28 28 C 1.40713 * 119.50961 * 359.74965 * 19 18 17 29 29 C 1.37616 * 119.75015 * 0.02562 * 28 19 18 30 30 H 1.09003 * 109.47017 * 181.30821 * 1 2 3 31 31 H 1.09004 * 109.47198 * 61.31291 * 1 2 3 32 32 H 1.09000 * 109.47028 * 301.31338 * 1 2 3 33 33 H 0.96697 * 116.99923 * 179.97438 * 8 6 4 34 34 H 1.08998 * 111.00354 * 277.42174 * 9 4 2 35 35 H 1.08996 * 111.03505 * 153.59184 * 9 4 2 36 36 H 1.09002 * 110.37183 * 204.15012 * 10 9 4 37 37 H 1.09004 * 110.46203 * 81.87549 * 10 9 4 38 38 H 0.96997 * 120.00024 * 359.97438 * 14 12 11 39 39 H 1.08997 * 109.46763 * 300.00334 * 15 14 12 40 40 H 1.09000 * 109.47001 * 59.99932 * 15 14 12 41 41 H 1.08002 * 119.87471 * 359.97438 * 17 16 15 42 42 H 1.07995 * 120.12746 * 180.28212 * 18 17 16 43 43 H 0.97000 * 120.00850 * 180.02562 * 23 22 20 44 44 H 1.08005 * 120.12437 * 180.02562 * 28 19 18 45 45 H 1.07998 * 119.88176 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7513 1.2417 5 1 2.9656 -0.2854 1.6179 6 6 0.9998 -0.8073 2.3164 7 8 0.2306 -1.7382 2.3599 8 8 0.9146 0.1767 3.2252 9 6 2.3518 -2.1704 0.6894 10 6 2.8568 -1.8488 -0.7393 11 7 2.0300 -0.7124 -1.1849 12 6 1.7754 -0.3811 -2.4663 13 8 1.0767 0.5817 -2.7178 14 7 2.2951 -1.1170 -3.4686 15 6 2.0187 -0.7565 -4.8614 16 6 2.7119 -1.7302 -5.7793 17 6 4.0017 -1.4669 -6.2140 18 6 4.6464 -2.3518 -7.0478 19 6 3.9873 -3.5220 -7.4679 20 6 4.6376 -4.4355 -8.3291 21 1 4.0572 -5.0551 -8.9967 22 6 6.0333 -4.5369 -8.3166 23 7 6.7185 -4.0108 -7.3342 24 14 6.9179 -5.4232 -9.7027 25 1 5.9228 -5.9251 -10.6840 26 1 7.8483 -4.4828 -10.3774 27 1 7.6860 -6.5669 -9.1482 28 6 2.6761 -3.7759 -7.0250 29 6 2.0525 -2.8793 -6.1876 30 1 -0.3633 -1.0274 0.0235 31 1 -0.3634 0.4933 -0.9015 32 1 -0.3633 0.5341 0.8780 33 1 0.2216 0.0970 3.8949 34 1 1.4452 -2.7745 0.6566 35 1 3.1267 -2.6642 1.2757 36 1 2.7088 -2.7062 -1.3960 37 1 3.9093 -1.5664 -0.7168 38 1 2.8527 -1.8848 -3.2679 39 1 0.9439 -0.7910 -5.0392 40 1 2.3870 0.2508 -5.0559 41 1 4.5039 -0.5660 -5.8938 42 1 5.6529 -2.1471 -7.3816 43 1 7.6860 -4.0807 -7.3256 44 1 2.1610 -4.6711 -7.3409 45 1 1.0460 -3.0719 -5.8467 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604633083.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:55 Heat of formation + Delta-G solvation = -123.135963 kcal Electronic energy + Delta-G solvation = -27841.812782 eV Core-core repulsion = 23822.756861 eV Total energy + Delta-G solvation = -4019.055921 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.06153 -40.92740 -39.57923 -38.58010 -37.05655 -36.28944 -35.11659 -33.29429 -32.27422 -31.72900 -31.16171 -28.57559 -27.66530 -25.64282 -24.34745 -23.93344 -22.89209 -21.84926 -21.21468 -20.66599 -19.32134 -19.22076 -18.91199 -17.80574 -17.31544 -17.12071 -16.91064 -16.74397 -16.10136 -15.78228 -15.57812 -15.33607 -15.18327 -14.65547 -14.41764 -14.20885 -14.10408 -13.83397 -13.73752 -13.62505 -13.49185 -13.27633 -13.20480 -12.81903 -12.74731 -12.66504 -12.48266 -12.46925 -12.07942 -12.06169 -11.87780 -11.54585 -11.50521 -11.28795 -11.26158 -11.04261 -10.18390 -9.54978 -9.38770 -9.25565 -8.63685 -6.37155 0.80164 1.09324 1.13651 1.39576 1.42616 1.53963 1.64749 2.08834 2.18691 2.21517 2.70093 3.08271 3.31569 3.38742 3.74411 3.86589 4.05959 4.16453 4.20478 4.24171 4.31351 4.33147 4.47841 4.51972 4.62128 4.65651 4.67698 4.76974 4.86904 4.91237 5.04956 5.10562 5.14208 5.16547 5.31706 5.35188 5.42915 5.54544 5.60788 5.69766 5.88895 6.03535 6.09676 6.20169 6.37058 6.68728 6.93132 6.96277 6.98511 7.01528 7.54430 8.33388 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022918 B = 0.002191 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.433520 B =12774.757727 C =13342.696022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.168 3.832 3 H 0.090 0.910 4 C -0.089 4.089 5 H 0.151 0.849 6 C 0.502 3.498 7 O -0.540 6.540 8 O -0.509 6.509 9 C -0.110 4.110 10 C 0.093 3.907 11 N -0.635 5.635 12 C 0.717 3.283 13 O -0.630 6.630 14 N -0.728 5.728 15 C 0.213 3.787 16 C -0.222 4.222 17 C -0.081 4.081 18 C -0.185 4.185 19 C 0.087 3.913 20 C -0.497 4.497 21 H 0.075 0.925 22 C 0.035 3.965 23 N -0.823 5.823 24 Si 0.981 3.019 25 H -0.260 1.260 26 H -0.265 1.265 27 H -0.266 1.266 28 C -0.240 4.240 29 C -0.069 4.069 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.429 0.571 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.403 0.597 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.288 0.712 44 H 0.098 0.902 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.617 4.932 19.237 20.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.064 3.936 3 H 0.108 0.892 4 C -0.108 4.108 5 H 0.168 0.832 6 C 0.345 3.655 7 O -0.430 6.430 8 O -0.323 6.323 9 C -0.148 4.148 10 C -0.029 4.029 11 N -0.373 5.373 12 C 0.419 3.581 13 O -0.512 6.512 14 N -0.382 5.382 15 C 0.089 3.911 16 C -0.223 4.223 17 C -0.100 4.100 18 C -0.204 4.204 19 C 0.084 3.916 20 C -0.527 4.527 21 H 0.093 0.907 22 C -0.179 4.179 23 N -0.449 5.449 24 Si 0.802 3.198 25 H -0.184 1.184 26 H -0.190 1.190 27 H -0.190 1.190 28 C -0.259 4.259 29 C -0.088 4.088 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.291 0.709 34 H 0.096 0.904 35 H 0.141 0.859 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.239 0.761 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.124 0.876 42 H 0.118 0.882 43 H 0.099 0.901 44 H 0.116 0.884 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.814 5.468 18.770 19.919 hybrid contribution 0.103 -0.854 -0.283 0.905 sum -3.711 4.615 18.487 19.412 Atomic orbital electron populations 1.22243 0.95534 1.01997 1.02689 1.21192 0.94070 0.96101 0.82283 0.89227 1.22152 0.98208 0.99963 0.90502 0.83172 1.22911 0.83139 0.78619 0.80835 1.90743 1.42779 1.35885 1.73554 1.84508 1.58377 1.47715 1.41654 1.22815 1.03662 0.93931 0.94421 1.22578 0.95870 0.88609 0.95851 1.47604 1.54131 1.32650 1.02954 1.15603 0.80118 0.82320 0.80023 1.90855 1.45178 1.31702 1.83439 1.45461 1.54870 1.32860 1.05052 1.19606 0.98104 0.95857 0.77489 1.19199 0.96127 0.99313 1.07704 1.20756 0.94159 0.97981 0.97110 1.21238 1.00353 0.95093 1.03761 1.18005 0.91889 0.91521 0.90139 1.19882 0.92482 1.20137 1.20178 0.90721 1.26707 0.98227 0.95212 0.97803 1.69843 1.09303 1.36797 1.29000 0.85177 0.78189 0.78363 0.78108 1.18376 1.18985 1.19047 1.21194 0.97689 1.01167 1.05870 1.20680 0.98244 0.93427 0.96430 0.92958 0.92557 0.90755 0.70905 0.90429 0.85914 0.90136 0.88745 0.76127 0.92465 0.92570 0.87625 0.88208 0.90114 0.88404 0.86839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.84 8.10 71.98 0.58 -3.26 16 2 C 0.17 3.35 3.43 45.34 0.16 3.50 16 3 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 4 C -0.09 -1.17 3.38 -10.35 -0.04 -1.21 16 5 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 6 C 0.50 7.55 5.41 71.24 0.39 7.93 16 7 O -0.54 -11.66 15.84 21.94 0.35 -11.31 16 8 O -0.51 -4.99 13.42 -51.34 -0.69 -5.68 16 9 C -0.11 -1.47 6.38 31.98 0.20 -1.26 16 10 C 0.09 1.54 6.57 86.85 0.57 2.11 16 11 N -0.64 -15.09 3.08 -805.87 -2.48 -17.58 16 12 C 0.72 22.85 8.27 179.06 1.48 24.33 16 13 O -0.63 -24.52 15.21 -4.00 -0.06 -24.58 16 14 N -0.73 -22.72 5.51 -482.31 -2.66 -25.38 16 15 C 0.21 7.41 5.79 85.63 0.50 7.90 16 16 C -0.22 -8.79 5.27 -19.68 -0.10 -8.90 16 17 C -0.08 -3.53 9.67 22.22 0.21 -3.31 16 18 C -0.18 -9.29 8.67 22.73 0.20 -9.09 16 19 C 0.09 4.52 5.55 -21.29 -0.12 4.40 16 20 C -0.50 -26.05 9.05 23.46 0.21 -25.84 16 21 H 0.07 3.81 7.89 -2.91 -0.02 3.78 16 22 C 0.04 1.73 5.19 85.26 0.44 2.18 16 23 N -0.82 -41.46 10.98 21.83 0.24 -41.22 16 24 Si 0.98 37.15 29.58 68.60 2.03 39.18 16 25 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 26 H -0.27 -9.68 7.11 99.48 0.71 -8.98 16 27 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 28 C -0.24 -11.25 9.80 22.73 0.22 -11.03 16 29 C -0.07 -2.85 9.67 22.22 0.21 -2.63 16 30 H 0.05 1.32 7.57 -2.39 -0.02 1.30 16 31 H 0.06 1.63 6.69 -2.39 -0.02 1.61 16 32 H 0.07 1.42 7.16 -2.39 -0.02 1.40 16 33 H 0.43 0.86 9.10 -74.06 -0.67 0.19 16 34 H 0.08 1.37 7.22 -2.39 -0.02 1.35 16 35 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 1.40 7.30 -2.39 -0.02 1.38 16 37 H 0.09 1.25 8.14 -2.38 -0.02 1.24 16 38 H 0.40 11.61 6.94 -92.71 -0.64 10.97 16 39 H 0.06 2.01 8.08 -2.39 -0.02 1.99 16 40 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 41 H 0.11 4.16 8.06 -2.91 -0.02 4.14 16 42 H 0.10 5.29 6.29 -2.91 -0.02 5.27 16 43 H 0.29 13.07 8.30 -92.71 -0.77 12.30 16 44 H 0.10 4.38 8.06 -2.91 -0.02 4.36 16 45 H 0.11 4.09 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -68.13 372.51 1.57 -66.55 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: -0.28 Total: 34.17 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 5.12 Total: -14.17 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -4.90 Total: -84.17 kcal Atomic # 8 Polarization: -41.17 SS G_CDS: -0.40 Total: -41.57 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 2.03 Total: 39.18 kcal Total: -68.13 1.57 -66.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604633083.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.582 kcal (2) G-P(sol) polarization free energy of solvation -68.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds