Wall clock time and date at job start Tue Mar 31 2020 17:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.87602 * 2 1 4 4 C 1.54316 * 110.01075 * 121.10030 * 2 1 3 5 5 H 1.09007 * 110.72264 * 23.31628 * 4 2 1 6 6 C 1.50706 * 110.72127 * 260.04520 * 4 2 1 7 7 O 1.20825 * 119.99436 * 359.97438 * 6 4 2 8 8 O 1.34224 * 119.99923 * 180.02562 * 6 4 2 9 9 C 1.55156 * 102.94434 * 141.68162 * 4 2 1 10 10 C 1.55126 * 101.48577 * 324.33341 * 9 4 2 11 11 N 1.47025 * 109.88069 * 238.98364 * 2 1 3 12 12 C 1.34781 * 125.64683 * 61.45487 * 11 2 1 13 13 O 1.21582 * 120.00036 * 359.97438 * 12 11 2 14 14 N 1.34776 * 119.99563 * 179.97438 * 12 11 2 15 15 C 1.46502 * 119.99734 * 179.97438 * 14 12 11 16 16 C 1.50704 * 109.47126 * 179.97438 * 15 14 12 17 17 C 1.38632 * 119.74793 * 90.00351 * 16 15 14 18 18 C 1.37613 * 120.24710 * 179.97438 * 17 16 15 19 19 C 1.40717 * 119.74828 * 359.97438 * 18 17 16 20 20 C 1.41393 * 120.24573 * 179.97438 * 19 18 17 21 21 H 1.07993 * 120.00018 * 204.33429 * 20 19 18 22 22 C 1.39948 * 119.99688 * 24.34122 * 20 19 18 23 23 N 1.30819 * 120.00393 * 17.81430 * 22 20 19 24 24 Si 1.86804 * 119.99775 * 197.81417 * 22 20 19 25 25 H 1.48497 * 109.46935 * 59.99824 * 24 22 20 26 26 H 1.48494 * 109.47138 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47060 * 300.00237 * 24 22 20 28 28 C 1.40713 * 119.50770 * 359.97438 * 19 18 17 29 29 C 1.37615 * 119.74817 * 0.04940 * 28 19 18 30 30 H 1.08996 * 109.47118 * 179.56206 * 1 2 3 31 31 H 1.08993 * 109.46879 * 299.56448 * 1 2 3 32 32 H 1.09002 * 109.47055 * 59.56276 * 1 2 3 33 33 H 0.96700 * 116.99968 * 180.02562 * 8 6 4 34 34 H 1.08997 * 111.00357 * 82.56815 * 9 4 2 35 35 H 1.08997 * 111.00696 * 206.42036 * 9 4 2 36 36 H 1.09003 * 110.49655 * 278.45103 * 10 9 4 37 37 H 1.08999 * 110.34715 * 156.06233 * 10 9 4 38 38 H 0.96997 * 120.00273 * 359.97438 * 14 12 11 39 39 H 1.09004 * 109.47006 * 59.99786 * 15 14 12 40 40 H 1.08998 * 109.47287 * 300.00130 * 15 14 12 41 41 H 1.08004 * 119.87733 * 359.97438 * 17 16 15 42 42 H 1.08008 * 120.12247 * 179.71760 * 18 17 16 43 43 H 0.97001 * 119.99946 * 179.97438 * 23 22 20 44 44 H 1.08001 * 120.12407 * 180.02562 * 28 19 18 45 45 H 1.08000 * 119.87928 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7490 1.2416 5 1 1.3103 -1.4472 1.6178 6 6 2.4695 0.2241 2.3163 7 8 2.3601 1.4127 2.1291 8 8 2.9585 -0.2297 3.4811 9 6 3.2918 -1.5108 0.6893 10 6 2.8131 -1.8794 -0.7395 11 7 2.0300 -0.7124 -1.1849 12 6 1.8049 -0.3602 -2.4663 13 8 1.1363 0.6236 -2.7179 14 7 2.3211 -1.0986 -3.4687 15 6 2.0760 -0.7161 -4.8615 16 6 2.7580 -1.6977 -5.7794 17 6 2.0758 -2.8250 -6.2102 18 6 2.6885 -3.7277 -7.0490 19 6 4.0123 -3.5027 -7.4697 20 6 4.6522 -4.4236 -8.3309 21 1 5.7300 -4.4892 -8.3465 22 6 3.8887 -5.2499 -9.1633 23 7 2.6397 -4.9520 -9.4132 24 14 4.6532 -6.7784 -9.9175 25 1 5.1146 -7.6859 -8.8364 26 1 3.6429 -7.4769 -10.7520 27 1 5.8098 -6.3877 -10.7629 28 6 4.6946 -2.3545 -7.0269 29 6 4.0624 -1.4655 -6.1880 30 1 -0.3633 -1.0276 -0.0079 31 1 -0.3633 0.5070 0.8938 32 1 -0.3633 0.5206 -0.8861 33 1 3.2084 0.4324 4.1400 34 1 4.1681 -0.8635 0.6564 35 1 3.4921 -2.4074 1.2758 36 1 2.1852 -2.7701 -0.7137 37 1 3.6681 -2.0359 -1.3971 38 1 2.8548 -1.8833 -3.2679 39 1 2.4732 0.2833 -5.0391 40 1 1.0036 -0.7208 -5.0562 41 1 1.0597 -2.9954 -5.8864 42 1 2.1567 -4.6077 -7.3797 43 1 2.1106 -5.5245 -9.9905 44 1 5.7108 -2.1718 -7.3439 45 1 4.5842 -0.5837 -5.8465 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604633085.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:03 Heat of formation + Delta-G solvation = -124.981715 kcal Electronic energy + Delta-G solvation = -27681.026072 eV Core-core repulsion = 23661.890114 eV Total energy + Delta-G solvation = -4019.135958 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.95297 -40.93521 -39.57657 -38.58274 -37.10966 -36.30546 -35.12584 -33.25152 -32.37251 -31.70272 -31.14646 -28.59565 -27.67523 -25.57106 -24.20810 -23.68253 -22.88716 -21.88570 -21.56912 -20.54881 -19.48962 -19.22832 -18.82294 -18.05918 -17.26289 -17.03207 -16.70953 -16.59262 -16.02217 -15.78585 -15.58975 -15.26204 -15.08281 -14.84483 -14.51962 -14.28103 -14.12478 -13.89057 -13.81449 -13.59663 -13.36474 -13.23625 -12.92108 -12.90732 -12.74299 -12.65347 -12.57573 -12.37177 -12.15823 -12.07449 -11.86723 -11.53849 -11.49383 -11.31550 -11.24789 -11.00746 -10.18658 -9.51937 -9.39051 -9.28671 -8.66029 -6.36122 0.81689 1.13255 1.14485 1.39258 1.42948 1.51445 1.62114 2.10879 2.18307 2.20752 2.68900 3.06044 3.28539 3.40270 3.75469 3.92648 4.12661 4.15909 4.18823 4.31839 4.32845 4.41674 4.52623 4.54179 4.65288 4.67497 4.68671 4.78647 4.96073 4.99850 5.05359 5.07373 5.15395 5.19885 5.35337 5.36732 5.43824 5.54755 5.59222 5.69274 5.90344 6.05711 6.09229 6.21744 6.36757 6.68491 6.92400 6.95753 6.99110 7.02863 7.56199 8.30273 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023357 B = 0.002124 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.520711 B =13178.368679 C =13660.289869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.159 3.841 3 H 0.061 0.939 4 C -0.086 4.086 5 H 0.156 0.844 6 C 0.498 3.502 7 O -0.550 6.550 8 O -0.501 6.501 9 C -0.105 4.105 10 C 0.089 3.911 11 N -0.636 5.636 12 C 0.715 3.285 13 O -0.634 6.634 14 N -0.725 5.725 15 C 0.213 3.787 16 C -0.226 4.226 17 C -0.080 4.080 18 C -0.191 4.191 19 C 0.087 3.913 20 C -0.495 4.495 21 H 0.078 0.922 22 C 0.035 3.965 23 N -0.820 5.820 24 Si 0.982 3.018 25 H -0.258 1.258 26 H -0.269 1.269 27 H -0.260 1.260 28 C -0.243 4.243 29 C -0.067 4.067 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.430 0.570 34 H 0.076 0.924 35 H 0.135 0.865 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.405 0.595 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.289 0.711 44 H 0.098 0.902 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.322 0.378 22.958 22.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.055 3.945 3 H 0.079 0.921 4 C -0.106 4.106 5 H 0.174 0.826 6 C 0.342 3.658 7 O -0.440 6.440 8 O -0.315 6.315 9 C -0.143 4.143 10 C -0.033 4.033 11 N -0.374 5.374 12 C 0.417 3.583 13 O -0.516 6.516 14 N -0.380 5.380 15 C 0.090 3.910 16 C -0.228 4.228 17 C -0.099 4.099 18 C -0.210 4.210 19 C 0.084 3.916 20 C -0.524 4.524 21 H 0.096 0.904 22 C -0.180 4.180 23 N -0.446 5.446 24 Si 0.803 3.197 25 H -0.183 1.183 26 H -0.194 1.194 27 H -0.185 1.185 28 C -0.262 4.262 29 C -0.086 4.086 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.292 0.708 34 H 0.095 0.905 35 H 0.153 0.847 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.241 0.759 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.100 0.900 44 H 0.116 0.884 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.519 1.084 22.199 22.231 hybrid contribution 0.482 -0.104 -0.389 0.628 sum -0.037 0.979 21.810 21.832 Atomic orbital electron populations 1.22087 0.94024 1.02945 1.02366 1.21201 0.95041 0.95667 0.82628 0.92100 1.22065 1.01953 0.96396 0.90160 0.82635 1.23059 0.72416 0.87807 0.82560 1.90768 1.52628 1.20052 1.80596 1.84466 1.74888 1.46077 1.26058 1.22834 0.94904 1.02093 0.94427 1.22694 0.95926 0.88535 0.96115 1.47614 1.56262 1.30699 1.02834 1.15645 0.80000 0.82474 0.80171 1.90862 1.46686 1.30553 1.83494 1.45403 1.56456 1.31323 1.04815 1.19559 0.98182 0.95556 0.77691 1.19154 0.95947 0.99699 1.07980 1.20734 0.98083 0.94203 0.96832 1.21261 0.97083 1.00873 1.01826 1.18001 0.92512 0.91006 0.90050 1.19871 0.94963 1.17955 1.19639 0.90408 1.26785 0.94931 1.00932 0.95395 1.69868 1.09793 1.36160 1.28750 0.85251 0.78915 0.77019 0.78559 1.18259 1.19354 1.18454 1.21141 1.00651 0.97115 1.07331 1.20660 0.93990 0.97677 0.96223 0.90776 0.90574 0.93793 0.70782 0.90477 0.84729 0.88680 0.89638 0.75922 0.92783 0.92982 0.87807 0.88057 0.90003 0.88359 0.86900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 9.11 71.98 0.66 -2.73 16 2 C 0.16 3.49 2.88 45.34 0.13 3.62 16 3 H 0.06 1.76 6.81 -2.39 -0.02 1.74 16 4 C -0.09 -1.09 2.98 -10.35 -0.03 -1.12 16 5 H 0.16 1.07 7.86 -2.38 -0.02 1.05 16 6 C 0.50 7.38 7.63 71.24 0.54 7.92 16 7 O -0.55 -12.97 16.18 21.97 0.36 -12.62 16 8 O -0.50 -4.04 13.42 -51.36 -0.69 -4.73 16 9 C -0.10 -1.00 6.53 32.06 0.21 -0.79 16 10 C 0.09 1.28 6.59 86.93 0.57 1.85 16 11 N -0.64 -15.21 3.06 -805.45 -2.47 -17.68 16 12 C 0.72 23.34 8.28 179.05 1.48 24.83 16 13 O -0.63 -26.07 15.37 -3.97 -0.06 -26.13 16 14 N -0.72 -22.50 5.51 -482.29 -2.66 -25.15 16 15 C 0.21 7.63 5.79 85.63 0.50 8.13 16 16 C -0.23 -9.07 5.27 -19.67 -0.10 -9.17 16 17 C -0.08 -3.49 9.67 22.22 0.21 -3.28 16 18 C -0.19 -9.61 8.69 22.73 0.20 -9.41 16 19 C 0.09 4.51 5.58 -21.29 -0.12 4.39 16 20 C -0.50 -25.75 9.06 23.46 0.21 -25.53 16 21 H 0.08 3.88 7.91 -2.91 -0.02 3.86 16 22 C 0.04 1.72 5.14 85.26 0.44 2.16 16 23 N -0.82 -41.78 10.95 21.83 0.24 -41.54 16 24 Si 0.98 36.74 29.60 68.60 2.03 38.77 16 25 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 26 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 27 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 28 C -0.24 -11.38 9.80 22.73 0.22 -11.15 16 29 C -0.07 -2.76 9.67 22.22 0.21 -2.55 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.04 1.28 6.87 -2.39 -0.02 1.26 16 33 H 0.43 0.30 9.10 -74.06 -0.67 -0.38 16 34 H 0.08 0.87 8.04 -2.39 -0.02 0.85 16 35 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.09 1.21 7.28 -2.39 -0.02 1.20 16 38 H 0.40 11.02 6.94 -92.71 -0.64 10.37 16 39 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16 40 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 41 H 0.10 4.15 8.06 -2.91 -0.02 4.13 16 42 H 0.10 5.37 6.16 -2.91 -0.02 5.35 16 43 H 0.29 13.35 8.30 -92.71 -0.77 12.58 16 44 H 0.10 4.37 8.06 -2.91 -0.02 4.35 16 45 H 0.11 4.09 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -71.62 376.22 1.81 -69.81 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: -0.28 Total: 32.11 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 5.34 Total: -12.84 kcal Atomic # 7 Polarization: -79.49 SS G_CDS: -4.89 Total: -84.38 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -0.40 Total: -43.48 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.03 Total: 38.77 kcal Total: -71.62 1.81 -69.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604633085.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.167 kcal (2) G-P(sol) polarization free energy of solvation -71.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds