Wall clock time and date at job start Tue Mar 31 2020 17:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.38762 * 2 1 4 4 C 1.54391 * 110.34289 * 237.77178 * 2 1 3 5 5 N 1.48147 * 104.61454 * 217.26210 * 4 2 1 6 6 C 1.34775 * 127.83235 * 219.57956 * 5 4 2 7 7 O 1.21587 * 120.00575 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99743 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99881 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.46910 * 180.02562 * 9 8 6 11 11 C 1.38637 * 119.74865 * 269.72930 * 10 9 8 12 12 C 1.37610 * 120.24868 * 179.72438 * 11 10 9 13 13 C 1.40720 * 119.74708 * 0.56826 * 12 11 10 14 14 C 1.41389 * 120.24749 * 179.68654 * 13 12 11 15 15 H 1.07999 * 119.99782 * 155.30991 * 14 13 12 16 16 C 1.39947 * 119.99886 * 335.30687 * 14 13 12 17 17 N 1.30815 * 120.00061 * 342.23470 * 16 14 13 18 18 Si 1.86803 * 119.99727 * 162.23433 * 16 14 13 19 19 H 1.48499 * 109.46786 * 94.66552 * 18 16 14 20 20 H 1.48495 * 109.46859 * 214.65980 * 18 16 14 21 21 H 1.48497 * 109.47195 * 334.66701 * 18 16 14 22 22 C 1.40721 * 119.50506 * 359.70301 * 13 12 11 23 23 C 1.37616 * 119.75046 * 0.02562 * 22 13 12 24 24 C 1.48141 * 104.32665 * 39.58269 * 5 4 2 25 25 C 1.54280 * 110.34513 * 122.22893 * 2 1 3 26 26 H 1.08999 * 110.34314 * 359.89749 * 25 2 1 27 27 C 1.50702 * 110.34572 * 237.73824 * 25 2 1 28 28 O 1.20827 * 119.99992 * 0.02562 * 27 25 2 29 29 O 1.34229 * 120.00219 * 179.97438 * 27 25 2 30 30 H 1.09006 * 109.46838 * 297.76616 * 1 2 3 31 31 H 1.09000 * 109.47035 * 57.76827 * 1 2 3 32 32 H 1.08997 * 109.47339 * 177.77126 * 1 2 3 33 33 H 1.09002 * 110.40215 * 336.04018 * 4 2 1 34 34 H 1.08997 * 110.41132 * 98.46998 * 4 2 1 35 35 H 0.96995 * 119.99971 * 0.02562 * 8 6 5 36 36 H 1.08998 * 109.46996 * 299.99770 * 9 8 6 37 37 H 1.08998 * 109.47089 * 59.99874 * 9 8 6 38 38 H 1.08005 * 119.87624 * 359.97438 * 11 10 9 39 39 H 1.08001 * 120.12974 * 180.27227 * 12 11 10 40 40 H 0.97005 * 120.00305 * 180.02562 * 17 16 14 41 41 H 1.08000 * 120.12036 * 179.97438 * 22 13 12 42 42 H 1.07994 * 119.87674 * 179.97438 * 23 22 13 43 43 H 1.08998 * 110.40766 * 201.63020 * 24 5 4 44 44 H 1.08998 * 110.40726 * 79.20098 * 24 5 4 45 45 H 0.96692 * 117.00237 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0667 -0.7720 -1.2246 5 7 3.2664 -1.4816 -0.7227 6 6 4.4424 -1.6663 -1.3547 7 8 4.6066 -1.2235 -2.4751 8 7 5.4364 -2.3419 -0.7447 9 6 6.7149 -2.5422 -1.4315 10 6 7.6472 -3.3217 -0.5401 11 6 8.4895 -2.6481 0.3310 12 6 9.3408 -3.3497 1.1535 13 6 9.3629 -4.7557 1.0996 14 6 10.2382 -5.4869 1.9352 15 1 10.0050 -6.5077 2.1998 16 6 11.4066 -4.8879 2.4193 17 7 11.8740 -3.8085 1.8467 18 14 12.2989 -5.6296 3.8833 19 1 13.3755 -6.5318 3.4015 20 1 12.8933 -4.5434 4.7029 21 1 11.3373 -6.4034 4.7090 22 6 8.5075 -5.4285 0.2074 23 6 7.6603 -4.7066 -0.6018 24 6 2.8802 -1.9421 0.6313 25 6 2.0664 -0.7715 1.2237 26 1 1.2399 -1.1489 1.8258 27 6 2.9558 0.1172 2.0547 28 8 3.1529 1.2604 1.7168 29 8 3.5281 -0.3610 3.1707 30 1 -0.3633 0.4788 0.9094 31 1 -0.3633 0.5481 -0.8693 32 1 -0.3634 -1.0268 -0.0400 33 1 1.3234 -1.4861 -1.5793 34 1 2.3400 -0.0795 -2.0207 35 1 5.3053 -2.6955 0.1490 36 1 6.5482 -3.0962 -2.3552 37 1 7.1583 -1.5739 -1.6635 38 1 8.4746 -1.5687 0.3670 39 1 9.9931 -2.8231 1.8345 40 1 12.6841 -3.3935 2.1821 41 1 8.5165 -6.5073 0.1575 42 1 7.0033 -5.2208 -1.2875 43 1 3.7673 -2.1324 1.2355 44 1 2.2641 -2.8389 0.5664 45 1 4.0900 0.2465 3.6708 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607432982.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:35 Heat of formation + Delta-G solvation = -105.124135 kcal Electronic energy + Delta-G solvation = -28033.182680 eV Core-core repulsion = 24014.907811 eV Total energy + Delta-G solvation = -4018.274869 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.08237 -39.71973 -38.07141 -37.46800 -36.30592 -34.70231 -33.54188 -32.89690 -30.54266 -30.28041 -29.36947 -27.36262 -26.06295 -25.01566 -23.48005 -22.40170 -21.08577 -20.18166 -19.98542 -19.89947 -18.26694 -18.09571 -17.40179 -17.25845 -16.35848 -15.85291 -15.50003 -15.37090 -14.71394 -14.50971 -14.27563 -13.96285 -13.77356 -13.56523 -13.46241 -13.25209 -12.80115 -12.69959 -12.58029 -12.42661 -12.05291 -11.96197 -11.80803 -11.61257 -11.57115 -11.36613 -11.19562 -11.10911 -11.05794 -10.74293 -10.62970 -10.56302 -10.02321 -9.70661 -9.50009 -9.23792 -8.97209 -8.45499 -7.58232 -7.46658 -6.87945 -4.47574 1.92362 2.41517 2.69969 2.80153 2.97390 3.00931 3.04427 3.13209 3.38035 3.84151 3.92439 4.08552 4.28450 4.55834 4.64829 4.70667 4.95772 5.01746 5.10284 5.19792 5.30496 5.36237 5.50187 5.58775 5.64102 5.73857 5.76370 5.92875 5.94713 6.09652 6.24703 6.27663 6.30964 6.36109 6.85745 6.88528 6.96651 7.13726 7.19491 7.25834 7.50260 7.62827 7.72864 7.94327 8.00985 8.17578 8.20080 8.52604 8.77535 8.79747 8.85504 10.06166 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016118 B = 0.002624 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.778142 B =10667.234671 C =11672.212323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 H 0.106 0.894 4 C 0.129 3.871 5 N -0.647 5.647 6 C 0.723 3.277 7 O -0.593 6.593 8 N -0.732 5.732 9 C 0.202 3.798 10 C -0.245 4.245 11 C -0.080 4.080 12 C -0.170 4.170 13 C 0.117 3.883 14 C -0.458 4.458 15 H 0.079 0.921 16 C 0.076 3.924 17 N -0.787 5.787 18 Si 0.908 3.092 19 H -0.270 1.270 20 H -0.275 1.275 21 H -0.260 1.260 22 C -0.230 4.230 23 C -0.068 4.068 24 C 0.113 3.887 25 C -0.094 4.094 26 H 0.126 0.874 27 C 0.485 3.515 28 O -0.508 6.508 29 O -0.513 6.513 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.394 0.606 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.087 0.913 39 H 0.118 0.882 40 H 0.282 0.718 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.945 4.841 2.817 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 H 0.124 0.876 4 C 0.005 3.995 5 N -0.387 5.387 6 C 0.426 3.574 7 O -0.471 6.471 8 N -0.386 5.386 9 C 0.080 3.920 10 C -0.246 4.246 11 C -0.099 4.099 12 C -0.189 4.189 13 C 0.114 3.886 14 C -0.487 4.487 15 H 0.097 0.903 16 C -0.143 4.143 17 N -0.411 5.411 18 Si 0.732 3.268 19 H -0.195 1.195 20 H -0.200 1.200 21 H -0.183 1.183 22 C -0.249 4.249 23 C -0.087 4.087 24 C -0.012 4.012 25 C -0.115 4.115 26 H 0.144 0.856 27 C 0.327 3.673 28 O -0.396 6.396 29 O -0.325 6.325 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.229 0.771 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.136 0.864 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -18.637 5.355 1.577 19.455 hybrid contribution 0.911 -0.046 1.534 1.785 sum -17.726 5.309 3.111 18.764 Atomic orbital electron populations 1.21823 0.93059 1.02408 1.02621 1.22305 0.96572 1.01463 0.92075 0.87637 1.22240 0.85622 0.95299 0.96302 1.48087 1.13145 1.60177 1.17271 1.15515 0.78728 0.79367 0.83824 1.90901 1.81112 1.56505 1.18609 1.45762 1.13886 1.58625 1.20318 1.19834 0.80101 0.98561 0.93500 1.18985 1.05382 0.93268 1.07013 1.20561 0.96011 0.97207 0.96113 1.21302 1.01032 0.94476 1.02093 1.17669 0.89782 0.92151 0.88952 1.19650 1.03726 0.99909 1.25450 0.90277 1.25956 0.97270 0.94332 0.96762 1.69822 1.18808 1.17372 1.35125 0.86300 0.79653 0.79626 0.81212 1.19473 1.19955 1.18338 1.20967 1.04331 0.97769 1.01874 1.20408 0.97533 0.93003 0.97769 1.22233 0.99582 0.95221 0.84122 1.22086 0.97570 0.95801 0.95997 0.85632 1.23187 0.78240 0.86890 0.79032 1.90713 1.59178 1.20024 1.69643 1.84504 1.61425 1.49318 1.37265 0.92102 0.91593 0.91978 0.90958 0.89454 0.77113 0.92486 0.92522 0.89467 0.86446 0.90675 0.88889 0.89357 0.89430 0.89251 0.72696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 8.92 37.16 0.33 -0.44 16 2 C -0.10 -0.87 3.25 -89.22 -0.29 -1.16 16 3 H 0.11 1.13 6.47 -51.93 -0.34 0.79 16 4 C 0.13 1.32 6.59 -2.41 -0.02 1.30 16 5 N -0.65 -8.28 3.32 -175.02 -0.58 -8.86 16 6 C 0.72 12.32 8.57 -86.92 -0.74 11.57 16 7 O -0.59 -12.30 16.61 5.29 0.09 -12.21 16 8 N -0.73 -12.15 5.53 -66.41 -0.37 -12.52 16 9 C 0.20 3.78 5.79 -5.19 -0.03 3.75 16 10 C -0.24 -5.08 5.27 -104.33 -0.55 -5.63 16 11 C -0.08 -1.79 9.67 -39.66 -0.38 -2.17 16 12 C -0.17 -4.22 8.70 -38.87 -0.34 -4.56 16 13 C 0.12 2.99 5.57 -106.82 -0.60 2.39 16 14 C -0.46 -11.67 9.05 -37.74 -0.34 -12.01 16 15 H 0.08 1.93 7.91 -52.49 -0.41 1.52 16 16 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 17 N -0.79 -19.70 10.97 55.55 0.61 -19.09 16 18 Si 0.91 17.91 29.60 -169.99 -5.03 12.88 16 19 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 20 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 21 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 22 C -0.23 -5.38 9.80 -38.87 -0.38 -5.76 16 23 C -0.07 -1.45 9.67 -39.66 -0.38 -1.83 16 24 C 0.11 1.03 6.45 -2.41 -0.02 1.02 16 25 C -0.09 -0.76 3.21 -90.37 -0.29 -1.05 16 26 H 0.13 0.63 7.71 -51.93 -0.40 0.23 16 27 C 0.48 5.06 7.53 36.01 0.27 5.34 16 28 O -0.51 -7.02 16.01 -18.75 -0.30 -7.32 16 29 O -0.51 -4.42 13.28 -39.25 -0.52 -4.94 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.27 8.10 -51.93 -0.42 -0.15 16 33 H 0.07 0.60 7.83 -51.93 -0.41 0.19 16 34 H 0.09 1.04 7.88 -51.93 -0.41 0.63 16 35 H 0.39 5.99 6.86 -40.82 -0.28 5.71 16 36 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 37 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 38 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 39 H 0.12 3.03 6.18 -52.49 -0.32 2.71 16 40 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 41 H 0.09 2.06 8.06 -52.49 -0.42 1.63 16 42 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.09 0.86 6.46 -51.93 -0.34 0.52 16 44 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.41 2.21 9.10 45.56 0.41 2.63 16 LS Contribution 377.35 15.07 5.69 5.69 Total: -1.00 -32.16 377.35 -9.68 -41.84 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -5.42 Total: 12.03 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -3.85 Total: -7.49 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: -0.34 Total: -40.47 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.73 Total: -24.47 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.16 -9.68 -41.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607432982.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.285 kcal (2) G-P(sol) polarization free energy of solvation -32.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds