Wall clock time and date at job start Tue Mar 31 2020 17:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.38762 * 2 1 4 4 C 1.54391 * 110.34289 * 237.77178 * 2 1 3 5 5 N 1.48147 * 104.61454 * 217.26210 * 4 2 1 6 6 C 1.34775 * 127.83235 * 219.57956 * 5 4 2 7 7 O 1.21587 * 120.00575 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99743 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99881 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.46910 * 180.02562 * 9 8 6 11 11 C 1.38637 * 119.74865 * 269.72930 * 10 9 8 12 12 C 1.37610 * 120.24868 * 179.72438 * 11 10 9 13 13 C 1.40720 * 119.74708 * 0.56826 * 12 11 10 14 14 C 1.41389 * 120.24749 * 179.68654 * 13 12 11 15 15 H 1.07999 * 119.99782 * 155.30991 * 14 13 12 16 16 C 1.39947 * 119.99886 * 335.30687 * 14 13 12 17 17 N 1.30815 * 120.00061 * 342.23470 * 16 14 13 18 18 Si 1.86803 * 119.99727 * 162.23433 * 16 14 13 19 19 H 1.48499 * 109.46786 * 94.66552 * 18 16 14 20 20 H 1.48495 * 109.46859 * 214.65980 * 18 16 14 21 21 H 1.48497 * 109.47195 * 334.66701 * 18 16 14 22 22 C 1.40721 * 119.50506 * 359.70301 * 13 12 11 23 23 C 1.37616 * 119.75046 * 0.02562 * 22 13 12 24 24 C 1.48141 * 104.32665 * 39.58269 * 5 4 2 25 25 C 1.54280 * 110.34513 * 122.22893 * 2 1 3 26 26 H 1.08999 * 110.34314 * 359.89749 * 25 2 1 27 27 C 1.50702 * 110.34572 * 237.73824 * 25 2 1 28 28 O 1.20827 * 119.99992 * 0.02562 * 27 25 2 29 29 O 1.34229 * 120.00219 * 179.97438 * 27 25 2 30 30 H 1.09006 * 109.46838 * 297.76616 * 1 2 3 31 31 H 1.09000 * 109.47035 * 57.76827 * 1 2 3 32 32 H 1.08997 * 109.47339 * 177.77126 * 1 2 3 33 33 H 1.09002 * 110.40215 * 336.04018 * 4 2 1 34 34 H 1.08997 * 110.41132 * 98.46998 * 4 2 1 35 35 H 0.96995 * 119.99971 * 0.02562 * 8 6 5 36 36 H 1.08998 * 109.46996 * 299.99770 * 9 8 6 37 37 H 1.08998 * 109.47089 * 59.99874 * 9 8 6 38 38 H 1.08005 * 119.87624 * 359.97438 * 11 10 9 39 39 H 1.08001 * 120.12974 * 180.27227 * 12 11 10 40 40 H 0.97005 * 120.00305 * 180.02562 * 17 16 14 41 41 H 1.08000 * 120.12036 * 179.97438 * 22 13 12 42 42 H 1.07994 * 119.87674 * 179.97438 * 23 22 13 43 43 H 1.08998 * 110.40766 * 201.63020 * 24 5 4 44 44 H 1.08998 * 110.40726 * 79.20098 * 24 5 4 45 45 H 0.96692 * 117.00237 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0667 -0.7720 -1.2246 5 7 3.2664 -1.4816 -0.7227 6 6 4.4424 -1.6663 -1.3547 7 8 4.6066 -1.2235 -2.4751 8 7 5.4364 -2.3419 -0.7447 9 6 6.7149 -2.5422 -1.4315 10 6 7.6472 -3.3217 -0.5401 11 6 8.4895 -2.6481 0.3310 12 6 9.3408 -3.3497 1.1535 13 6 9.3629 -4.7557 1.0996 14 6 10.2382 -5.4869 1.9352 15 1 10.0050 -6.5077 2.1998 16 6 11.4066 -4.8879 2.4193 17 7 11.8740 -3.8085 1.8467 18 14 12.2989 -5.6296 3.8833 19 1 13.3755 -6.5318 3.4015 20 1 12.8933 -4.5434 4.7029 21 1 11.3373 -6.4034 4.7090 22 6 8.5075 -5.4285 0.2074 23 6 7.6603 -4.7066 -0.6018 24 6 2.8802 -1.9421 0.6313 25 6 2.0664 -0.7715 1.2237 26 1 1.2399 -1.1489 1.8258 27 6 2.9558 0.1172 2.0547 28 8 3.1529 1.2604 1.7168 29 8 3.5281 -0.3610 3.1707 30 1 -0.3633 0.4788 0.9094 31 1 -0.3633 0.5481 -0.8693 32 1 -0.3634 -1.0268 -0.0400 33 1 1.3234 -1.4861 -1.5793 34 1 2.3400 -0.0795 -2.0207 35 1 5.3053 -2.6955 0.1490 36 1 6.5482 -3.0962 -2.3552 37 1 7.1583 -1.5739 -1.6635 38 1 8.4746 -1.5687 0.3670 39 1 9.9931 -2.8231 1.8345 40 1 12.6841 -3.3935 2.1821 41 1 8.5165 -6.5073 0.1575 42 1 7.0033 -5.2208 -1.2875 43 1 3.7673 -2.1324 1.2355 44 1 2.2641 -2.8389 0.5664 45 1 4.0900 0.2465 3.6708 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607432982.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:34 Heat of formation + Delta-G solvation = -125.554094 kcal Electronic energy + Delta-G solvation = -28034.068589 eV Core-core repulsion = 24014.907811 eV Total energy + Delta-G solvation = -4019.160779 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.94619 -40.87019 -39.57190 -38.69647 -37.13606 -36.32568 -35.13204 -33.88432 -31.95375 -31.26998 -31.18113 -28.81367 -27.07790 -25.99905 -25.00538 -23.18548 -22.90589 -21.86758 -21.15528 -20.70952 -19.32102 -19.24144 -18.96231 -18.05667 -17.37529 -17.24551 -16.91963 -16.56556 -16.09506 -15.72478 -15.62624 -15.34629 -15.08241 -14.93571 -14.44346 -14.25495 -13.97596 -13.84391 -13.62952 -13.47268 -13.41568 -13.28473 -13.16581 -12.93174 -12.73394 -12.60851 -12.41153 -12.22392 -12.17120 -12.00289 -11.73423 -11.55628 -11.51764 -11.39903 -11.29735 -11.02722 -10.27410 -9.60838 -9.40960 -9.30091 -8.67556 -6.37416 0.79646 1.12195 1.12933 1.38567 1.42243 1.53527 1.68619 2.01005 2.12028 2.19665 2.66598 3.04759 3.29502 3.46182 3.73467 4.01671 4.03823 4.13885 4.29980 4.32662 4.37398 4.45322 4.50622 4.55202 4.64427 4.65412 4.74440 4.78310 4.88831 5.03844 5.07834 5.14174 5.16847 5.26297 5.33994 5.41479 5.44997 5.49340 5.59120 5.67669 5.87998 6.02996 6.07971 6.19678 6.34989 6.66946 6.90943 6.91299 6.93356 7.00245 7.49752 8.29158 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016118 B = 0.002624 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.778142 B =10667.234671 C =11672.212323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.097 4.097 3 H 0.076 0.924 4 C 0.125 3.875 5 N -0.649 5.649 6 C 0.719 3.281 7 O -0.637 6.637 8 N -0.726 5.726 9 C 0.213 3.787 10 C -0.228 4.228 11 C -0.082 4.082 12 C -0.191 4.191 13 C 0.088 3.912 14 C -0.494 4.494 15 H 0.079 0.921 16 C 0.035 3.965 17 N -0.822 5.822 18 Si 0.981 3.019 19 H -0.263 1.263 20 H -0.267 1.267 21 H -0.256 1.256 22 C -0.241 4.241 23 C -0.064 4.064 24 C 0.109 3.891 25 C -0.088 4.088 26 H 0.168 0.832 27 C 0.482 3.518 28 O -0.551 6.551 29 O -0.510 6.510 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.062 0.938 35 H 0.403 0.597 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.289 0.711 41 H 0.101 0.899 42 H 0.117 0.883 43 H 0.080 0.920 44 H 0.126 0.874 45 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.228 3.705 3.770 21.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.116 4.116 3 H 0.094 0.906 4 C 0.002 3.998 5 N -0.387 5.387 6 C 0.421 3.579 7 O -0.519 6.519 8 N -0.381 5.381 9 C 0.089 3.911 10 C -0.229 4.229 11 C -0.101 4.101 12 C -0.210 4.210 13 C 0.085 3.915 14 C -0.523 4.523 15 H 0.097 0.903 16 C -0.181 4.181 17 N -0.447 5.447 18 Si 0.802 3.198 19 H -0.188 1.188 20 H -0.192 1.192 21 H -0.179 1.179 22 C -0.261 4.261 23 C -0.083 4.083 24 C -0.014 4.014 25 C -0.108 4.108 26 H 0.185 0.815 27 C 0.326 3.674 28 O -0.441 6.441 29 O -0.323 6.323 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.080 0.920 35 H 0.239 0.761 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.100 0.900 41 H 0.119 0.881 42 H 0.135 0.865 43 H 0.099 0.901 44 H 0.144 0.856 45 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -20.967 4.208 2.580 21.540 hybrid contribution 1.505 0.383 1.174 1.947 sum -19.462 4.591 3.754 20.345 Atomic orbital electron populations 1.21806 0.90270 1.03984 1.03175 1.22202 0.98646 0.99474 0.91324 0.90577 1.22485 0.85119 0.95593 0.96609 1.48117 1.12316 1.59565 1.18662 1.15610 0.79713 0.79113 0.83486 1.90866 1.82197 1.58192 1.20675 1.45431 1.13234 1.58940 1.20529 1.19579 0.80597 0.97696 0.93182 1.19149 1.04582 0.93404 1.05797 1.20712 0.95697 0.97828 0.95874 1.21236 1.02039 0.94627 1.03127 1.18002 0.90830 0.92664 0.89984 1.19902 1.04899 1.00350 1.27167 0.90266 1.26796 0.97629 0.94606 0.99020 1.69877 1.19573 1.18728 1.36542 0.85201 0.78301 0.78862 0.77442 1.18827 1.19181 1.17946 1.21164 1.04509 0.98419 1.01965 1.20666 0.97116 0.93111 0.97383 1.22557 1.00117 0.96820 0.81894 1.22238 0.97985 0.94705 0.95839 0.81482 1.23757 0.77884 0.86612 0.79151 1.90709 1.60724 1.21990 1.70710 1.84486 1.61369 1.49595 1.36835 0.91299 0.91446 0.89776 0.88067 0.91981 0.76114 0.92169 0.93488 0.88392 0.88227 0.90042 0.88091 0.86503 0.90108 0.85611 0.71263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 8.92 71.98 0.64 -0.37 16 2 C -0.10 -1.42 3.25 -9.89 -0.03 -1.46 16 3 H 0.08 1.62 6.47 -2.39 -0.02 1.61 16 4 C 0.12 2.34 6.59 86.54 0.57 2.92 16 5 N -0.65 -15.51 3.32 -825.90 -2.74 -18.25 16 6 C 0.72 23.94 8.57 179.05 1.53 25.47 16 7 O -0.64 -26.58 16.61 -3.99 -0.07 -26.64 16 8 N -0.73 -23.29 5.53 -482.28 -2.66 -25.95 16 9 C 0.21 7.76 5.79 85.63 0.50 8.26 16 10 C -0.23 -9.27 5.27 -19.67 -0.10 -9.37 16 11 C -0.08 -3.70 9.67 22.22 0.21 -3.48 16 12 C -0.19 -9.74 8.70 22.73 0.20 -9.54 16 13 C 0.09 4.57 5.57 -21.29 -0.12 4.45 16 14 C -0.49 -25.74 9.05 23.46 0.21 -25.53 16 15 H 0.08 3.95 7.91 -2.91 -0.02 3.93 16 16 C 0.04 1.72 5.14 85.26 0.44 2.16 16 17 N -0.82 -42.22 10.97 21.83 0.24 -41.98 16 18 Si 0.98 36.91 29.60 68.60 2.03 38.94 16 19 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 20 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 21 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 22 C -0.24 -11.24 9.80 22.73 0.22 -11.02 16 23 C -0.06 -2.64 9.67 22.22 0.21 -2.42 16 24 C 0.11 1.65 6.45 86.54 0.56 2.21 16 25 C -0.09 -1.15 3.21 -10.63 -0.03 -1.18 16 26 H 0.17 0.84 7.71 -2.39 -0.02 0.82 16 27 C 0.48 9.40 7.53 71.24 0.54 9.94 16 28 O -0.55 -15.24 16.01 21.96 0.35 -14.88 16 29 O -0.51 -7.93 13.28 -51.40 -0.68 -8.61 16 30 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.08 0.31 8.10 -2.39 -0.02 0.29 16 33 H 0.10 1.35 7.83 -2.39 -0.02 1.33 16 34 H 0.06 1.49 7.88 -2.39 -0.02 1.47 16 35 H 0.40 11.56 6.86 -92.71 -0.64 10.93 16 36 H 0.06 2.18 8.08 -2.39 -0.02 2.17 16 37 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 38 H 0.10 4.11 8.06 -2.91 -0.02 4.09 16 39 H 0.10 5.37 6.18 -2.91 -0.02 5.35 16 40 H 0.29 13.42 8.30 -92.70 -0.77 12.65 16 41 H 0.10 4.44 8.06 -2.91 -0.02 4.41 16 42 H 0.12 4.13 8.06 -2.91 -0.02 4.11 16 43 H 0.08 1.37 6.46 -2.39 -0.02 1.36 16 44 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.43 4.13 9.10 -74.06 -0.67 3.45 16 Total: -1.00 -72.78 377.35 1.75 -71.03 By element: Atomic # 1 Polarization: 35.59 SS G_CDS: -0.27 Total: 35.32 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: 5.55 Total: -8.97 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -5.16 Total: -86.18 kcal Atomic # 8 Polarization: -49.74 SS G_CDS: -0.40 Total: -50.14 kcal Atomic # 14 Polarization: 36.91 SS G_CDS: 2.03 Total: 38.94 kcal Total: -72.78 1.75 -71.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607432982.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.522 kcal (2) G-P(sol) polarization free energy of solvation -72.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds