Wall clock time and date at job start Tue Mar 31 2020 17:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.58731 * 2 1 4 4 C 1.53676 * 110.65866 * 236.83141 * 2 1 3 5 5 N 1.44597 * 111.23576 * 241.31593 * 4 2 1 6 6 C 1.28453 * 119.84962 * 0.50267 * 5 4 2 7 7 N 1.37564 * 125.01247 * 179.77434 * 6 5 4 8 8 C 1.47078 * 120.88365 * 359.69760 * 7 6 5 9 9 C 1.53237 * 108.52112 * 231.16182 * 8 7 6 10 10 N 1.46905 * 109.34216 * 306.16926 * 9 8 7 11 11 C 1.38819 * 110.99810 * 187.25343 * 10 9 8 12 12 C 1.39794 * 119.57957 * 166.45685 * 11 10 9 13 13 C 1.38603 * 119.48942 * 179.97438 * 12 11 10 14 14 C 1.38385 * 118.68159 * 0.02562 * 13 12 11 15 15 C 1.40552 * 119.14859 * 0.02562 * 14 13 12 16 16 C 1.41319 * 119.78592 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99693 * 346.59959 * 16 15 14 18 18 C 1.40026 * 120.00237 * 166.59319 * 16 15 14 19 19 N 1.30743 * 119.99990 * 172.49504 * 18 16 15 20 20 Si 1.86800 * 119.99854 * 352.49793 * 18 16 15 21 21 H 1.48495 * 109.47492 * 85.19948 * 20 18 16 22 22 H 1.48501 * 109.47345 * 205.20320 * 20 18 16 23 23 H 1.48500 * 109.47164 * 325.19902 * 20 18 16 24 24 N 1.31952 * 119.59136 * 346.47208 * 11 10 9 25 25 C 1.46900 * 111.26533 * 63.10513 * 10 9 8 26 26 C 1.47088 * 120.87906 * 179.67431 * 7 6 5 27 27 S 1.76761 * 109.96998 * 359.50960 * 6 5 4 28 28 H 1.09000 * 109.47154 * 298.47213 * 1 2 3 29 29 H 1.08997 * 109.47052 * 58.47019 * 1 2 3 30 30 H 1.08999 * 109.46911 * 178.47255 * 1 2 3 31 31 H 1.08996 * 109.13655 * 2.02605 * 4 2 1 32 32 H 1.09000 * 109.13129 * 121.19102 * 4 2 1 33 33 H 1.08997 * 109.62938 * 111.45127 * 8 7 6 34 34 H 1.08997 * 109.78787 * 350.96810 * 8 7 6 35 35 H 1.09000 * 109.49346 * 186.20629 * 9 8 7 36 36 H 1.09004 * 109.49517 * 66.13245 * 9 8 7 37 37 H 1.07998 * 120.26122 * 359.97438 * 12 11 10 38 38 H 1.08005 * 120.65785 * 179.72618 * 13 12 11 39 39 H 1.08000 * 120.42582 * 179.97438 * 14 13 12 40 40 H 0.97000 * 119.99739 * 180.02562 * 19 18 16 41 41 H 1.08996 * 109.49295 * 56.85673 * 25 10 9 42 42 H 1.08999 * 109.49136 * 176.93888 * 25 10 9 43 43 H 1.08997 * 109.62600 * 248.54438 * 26 7 6 44 44 H 1.09000 * 109.62867 * 9.12769 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9133 1.0204 0.0000 4 6 2.0721 -0.7867 -1.2036 5 7 2.8622 -1.9197 -0.7759 6 6 3.0184 -2.1536 0.4774 7 7 3.7419 -3.1999 1.0009 8 6 4.4112 -4.1699 0.1209 9 6 4.0120 -5.5825 0.5608 10 7 4.2955 -5.7444 1.9931 11 6 4.0998 -7.0592 2.3934 12 6 4.5828 -7.4815 3.6355 13 6 4.3859 -8.7945 4.0335 14 6 3.7126 -9.6528 3.1820 15 6 3.2521 -9.1686 1.9455 16 6 2.5635 -10.0335 1.0653 17 1 2.5782 -11.1000 1.2349 18 6 1.8620 -9.5079 -0.0267 19 7 1.3490 -10.3108 -0.9220 20 14 1.6593 -7.6594 -0.2042 21 1 2.8515 -7.0937 -0.8851 22 1 0.4455 -7.3696 -1.0092 23 1 1.5194 -7.0453 1.1406 24 7 3.4606 -7.8946 1.5968 25 6 3.4893 -4.8218 2.8035 26 6 3.8672 -3.3780 2.4556 27 16 2.1728 -0.9281 1.4302 28 1 -0.3633 0.4899 0.9034 29 1 -0.3633 0.5374 -0.8759 30 1 -0.3633 -1.0273 -0.0274 31 1 1.2353 -1.1378 -1.8073 32 1 2.6972 -0.1292 -1.8079 33 1 5.4918 -4.0530 0.2019 34 1 4.1015 -4.0066 -0.9113 35 1 4.5833 -6.3158 -0.0083 36 1 2.9472 -5.7320 0.3816 37 1 5.1053 -6.7901 4.2800 38 1 4.7549 -9.1421 4.9872 39 1 3.5440 -10.6817 3.4636 40 1 0.8634 -9.9466 -1.6786 41 1 2.4319 -4.9818 2.5931 42 1 3.6818 -5.0033 3.8609 43 1 4.8956 -3.1850 2.7609 44 1 3.1948 -2.6899 2.9680 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647108373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:41 Heat of formation + Delta-G solvation = 80.237453 kcal Electronic energy + Delta-G solvation = -26548.415723 eV Core-core repulsion = 23013.224358 eV Total energy + Delta-G solvation = -3535.191365 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 332.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.93315 -38.52996 -37.40491 -35.21133 -33.57146 -32.47349 -31.58832 -30.88759 -29.91291 -27.55670 -25.97595 -25.43982 -23.91452 -23.21631 -21.93476 -21.18388 -20.56869 -19.35756 -18.08822 -17.69022 -16.79340 -16.03599 -15.71299 -15.22899 -15.04597 -14.91583 -14.74850 -14.61338 -14.44605 -13.83163 -13.74729 -13.58954 -12.99130 -12.91911 -12.72008 -12.50389 -12.44668 -12.18111 -11.87138 -11.68243 -11.45470 -11.34965 -11.20428 -11.06118 -10.83281 -10.73310 -10.58098 -10.40085 -10.17000 -9.48239 -9.21971 -8.91915 -8.55394 -8.31290 -7.87574 -7.81304 -7.39247 -6.94504 -4.75402 1.07569 1.80921 2.14178 2.38395 2.58513 2.82312 3.34954 3.41074 3.52539 4.05901 4.16219 4.26111 4.40274 4.49357 4.61862 4.80997 4.99041 5.08211 5.20409 5.21772 5.31279 5.35490 5.43320 5.48166 5.49780 5.52312 5.63541 5.70932 5.76863 5.82978 5.90435 6.04872 6.16723 6.30555 6.39001 6.51397 6.55449 6.62324 6.97693 7.10154 7.18326 7.31472 7.46475 7.56744 7.81896 7.89753 8.11273 8.51861 8.54636 9.43764 9.96716 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.015337 B = 0.003937 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.159360 B = 7110.626647 C = 8257.566369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.080 4.080 3 H 0.113 0.887 4 C 0.073 3.927 5 N -0.616 5.616 6 C 0.447 3.553 7 N -0.581 5.581 8 C 0.132 3.868 9 C 0.044 3.956 10 N -0.479 5.479 11 C 0.339 3.661 12 C -0.301 4.301 13 C -0.038 4.038 14 C -0.269 4.269 15 C 0.262 3.738 16 C -0.411 4.411 17 H 0.096 0.904 18 C 0.079 3.921 19 N -0.800 5.800 20 Si 1.004 2.996 21 H -0.268 1.268 22 H -0.335 1.335 23 H -0.271 1.271 24 N -0.594 5.594 25 C 0.048 3.952 26 C 0.133 3.867 27 S -0.211 6.211 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.288 0.712 41 H 0.046 0.954 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.929 18.969 2.628 19.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.212 4.212 3 H 0.131 0.869 4 C -0.060 4.060 5 N -0.348 5.348 6 C 0.061 3.939 7 N -0.302 5.302 8 C 0.008 3.992 9 C -0.085 4.085 10 N -0.199 5.199 11 C 0.105 3.895 12 C -0.326 4.326 13 C -0.062 4.062 14 C -0.292 4.292 15 C 0.138 3.862 16 C -0.442 4.442 17 H 0.114 0.886 18 C -0.143 4.143 19 N -0.423 5.423 20 Si 0.841 3.159 21 H -0.195 1.195 22 H -0.269 1.269 23 H -0.198 1.198 24 N -0.317 5.317 25 C -0.080 4.080 26 C 0.010 3.990 27 S 0.016 5.984 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.072 0.928 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.099 0.901 41 H 0.064 0.936 42 H 0.115 0.885 43 H 0.101 0.899 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.151 19.028 2.134 19.182 hybrid contribution -0.737 0.337 -0.168 0.827 sum 0.414 19.365 1.966 19.469 Atomic orbital electron populations 1.21906 0.91301 1.03422 1.02734 1.24667 1.00391 1.02080 0.94028 0.86931 1.22527 0.97104 0.89838 0.96573 1.69954 1.28354 1.23158 1.13347 1.23478 0.90961 0.90103 0.89355 1.46181 1.52441 1.25149 1.06394 1.21913 0.96784 0.86102 0.94437 1.22891 1.01544 0.95826 0.88209 1.59456 1.52796 1.03172 1.04505 1.19369 0.91162 0.88249 0.90718 1.20581 1.15887 0.97296 0.98835 1.20853 0.94854 0.93109 0.97420 1.21573 1.10566 1.00073 0.96941 1.18336 0.89941 0.87196 0.90741 1.19527 1.23900 0.95653 1.05096 0.88555 1.26450 0.91389 1.03552 0.92932 1.69623 1.24701 1.39327 1.08670 0.84828 0.74690 0.79125 0.77285 1.19494 1.26917 1.19832 1.66718 1.23045 1.06123 1.35863 1.22522 0.95987 0.90762 0.98712 1.21865 1.02625 0.96347 0.78196 1.86515 1.63771 1.31125 1.17025 0.91553 0.90919 0.91423 0.89187 0.89468 0.90791 0.88468 0.88448 0.92794 0.87639 0.87667 0.87460 0.90144 0.93572 0.88530 0.89915 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.06 9.08 37.16 0.34 -0.72 16 2 C -0.08 -0.75 3.99 -26.38 -0.11 -0.86 16 3 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 4 C 0.07 0.80 7.24 -4.71 -0.03 0.77 16 5 N -0.62 -9.09 9.91 -62.16 -0.62 -9.71 16 6 C 0.45 6.52 7.98 -89.69 -0.72 5.81 16 7 N -0.58 -8.58 3.09 -173.61 -0.54 -9.12 16 8 C 0.13 2.05 6.66 -3.60 -0.02 2.03 16 9 C 0.04 0.82 3.61 -3.70 -0.01 0.81 16 10 N -0.48 -8.90 4.61 -172.87 -0.80 -9.70 16 11 C 0.34 7.37 6.10 -155.33 -0.95 6.42 16 12 C -0.30 -6.06 9.32 -38.87 -0.36 -6.43 16 13 C -0.04 -0.77 10.15 -39.39 -0.40 -1.17 16 14 C -0.27 -6.14 9.83 -38.66 -0.38 -6.52 16 15 C 0.26 6.70 6.26 -85.00 -0.53 6.17 16 16 C -0.41 -11.15 9.70 -37.74 -0.37 -11.51 16 17 H 0.10 2.66 8.06 -52.49 -0.42 2.24 16 18 C 0.08 2.13 5.52 -17.35 -0.10 2.03 16 19 N -0.80 -21.57 13.92 55.55 0.77 -20.80 16 20 Si 1.00 24.62 22.35 -169.99 -3.80 20.82 16 21 H -0.27 -6.35 5.38 56.52 0.30 -6.05 16 22 H -0.34 -8.23 7.11 56.52 0.40 -7.82 16 23 H -0.27 -6.94 6.28 56.52 0.36 -6.58 16 24 N -0.59 -14.65 3.78 -10.33 -0.04 -14.69 16 25 C 0.05 0.75 5.50 -3.70 -0.02 0.73 16 26 C 0.13 1.72 6.63 -3.60 -0.02 1.69 16 27 S -0.21 -2.57 21.08 -107.50 -2.27 -4.84 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.93 7.65 -51.93 -0.40 0.53 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.10 1.54 7.28 -51.93 -0.38 1.16 16 35 H 0.10 1.98 7.43 -51.93 -0.39 1.59 16 36 H 0.05 1.16 4.10 -51.93 -0.21 0.94 16 37 H 0.11 1.86 7.93 -52.49 -0.42 1.44 16 38 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 39 H 0.11 2.29 8.06 -52.49 -0.42 1.87 16 40 H 0.29 7.13 8.29 -40.82 -0.34 6.79 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.10 1.36 7.44 -51.93 -0.39 0.97 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.09 1.01 6.55 -51.93 -0.34 0.67 16 LS Contribution 351.06 15.07 5.29 5.29 Total: -1.00 -29.59 351.06 -12.12 -41.71 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.45 Total: 1.79 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -3.68 Total: -0.76 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: -1.21 Total: -64.01 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -3.80 Total: 20.82 kcal Atomic # 16 Polarization: -2.57 SS G_CDS: -2.27 Total: -4.84 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.59 -12.12 -41.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647108373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.945 kcal (2) G-P(sol) polarization free energy of solvation -29.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds