Wall clock time and date at job start Tue Mar 31 2020 17:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.58731 * 2 1 4 4 C 1.53676 * 110.65866 * 236.83141 * 2 1 3 5 5 N 1.44597 * 111.23576 * 241.31593 * 4 2 1 6 6 C 1.28453 * 119.84962 * 0.50267 * 5 4 2 7 7 N 1.37564 * 125.01247 * 179.77434 * 6 5 4 8 8 C 1.47078 * 120.88365 * 359.69760 * 7 6 5 9 9 C 1.53237 * 108.52112 * 231.16182 * 8 7 6 10 10 N 1.46905 * 109.34216 * 306.16926 * 9 8 7 11 11 C 1.38819 * 110.99810 * 187.25343 * 10 9 8 12 12 C 1.39794 * 119.57957 * 166.45685 * 11 10 9 13 13 C 1.38603 * 119.48942 * 179.97438 * 12 11 10 14 14 C 1.38385 * 118.68159 * 0.02562 * 13 12 11 15 15 C 1.40552 * 119.14859 * 0.02562 * 14 13 12 16 16 C 1.41319 * 119.78592 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99693 * 346.59959 * 16 15 14 18 18 C 1.40026 * 120.00237 * 166.59319 * 16 15 14 19 19 N 1.30743 * 119.99990 * 172.49504 * 18 16 15 20 20 Si 1.86800 * 119.99854 * 352.49793 * 18 16 15 21 21 H 1.48495 * 109.47492 * 85.19948 * 20 18 16 22 22 H 1.48501 * 109.47345 * 205.20320 * 20 18 16 23 23 H 1.48500 * 109.47164 * 325.19902 * 20 18 16 24 24 N 1.31952 * 119.59136 * 346.47208 * 11 10 9 25 25 C 1.46900 * 111.26533 * 63.10513 * 10 9 8 26 26 C 1.47088 * 120.87906 * 179.67431 * 7 6 5 27 27 S 1.76761 * 109.96998 * 359.50960 * 6 5 4 28 28 H 1.09000 * 109.47154 * 298.47213 * 1 2 3 29 29 H 1.08997 * 109.47052 * 58.47019 * 1 2 3 30 30 H 1.08999 * 109.46911 * 178.47255 * 1 2 3 31 31 H 1.08996 * 109.13655 * 2.02605 * 4 2 1 32 32 H 1.09000 * 109.13129 * 121.19102 * 4 2 1 33 33 H 1.08997 * 109.62938 * 111.45127 * 8 7 6 34 34 H 1.08997 * 109.78787 * 350.96810 * 8 7 6 35 35 H 1.09000 * 109.49346 * 186.20629 * 9 8 7 36 36 H 1.09004 * 109.49517 * 66.13245 * 9 8 7 37 37 H 1.07998 * 120.26122 * 359.97438 * 12 11 10 38 38 H 1.08005 * 120.65785 * 179.72618 * 13 12 11 39 39 H 1.08000 * 120.42582 * 179.97438 * 14 13 12 40 40 H 0.97000 * 119.99739 * 180.02562 * 19 18 16 41 41 H 1.08996 * 109.49295 * 56.85673 * 25 10 9 42 42 H 1.08999 * 109.49136 * 176.93888 * 25 10 9 43 43 H 1.08997 * 109.62600 * 248.54438 * 26 7 6 44 44 H 1.09000 * 109.62867 * 9.12769 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9133 1.0204 0.0000 4 6 2.0721 -0.7867 -1.2036 5 7 2.8622 -1.9197 -0.7759 6 6 3.0184 -2.1536 0.4774 7 7 3.7419 -3.1999 1.0009 8 6 4.4112 -4.1699 0.1209 9 6 4.0120 -5.5825 0.5608 10 7 4.2955 -5.7444 1.9931 11 6 4.0998 -7.0592 2.3934 12 6 4.5828 -7.4815 3.6355 13 6 4.3859 -8.7945 4.0335 14 6 3.7126 -9.6528 3.1820 15 6 3.2521 -9.1686 1.9455 16 6 2.5635 -10.0335 1.0653 17 1 2.5782 -11.1000 1.2349 18 6 1.8620 -9.5079 -0.0267 19 7 1.3490 -10.3108 -0.9220 20 14 1.6593 -7.6594 -0.2042 21 1 2.8515 -7.0937 -0.8851 22 1 0.4455 -7.3696 -1.0092 23 1 1.5194 -7.0453 1.1406 24 7 3.4606 -7.8946 1.5968 25 6 3.4893 -4.8218 2.8035 26 6 3.8672 -3.3780 2.4556 27 16 2.1728 -0.9281 1.4302 28 1 -0.3633 0.4899 0.9034 29 1 -0.3633 0.5374 -0.8759 30 1 -0.3633 -1.0273 -0.0274 31 1 1.2353 -1.1378 -1.8073 32 1 2.6972 -0.1292 -1.8079 33 1 5.4918 -4.0530 0.2019 34 1 4.1015 -4.0066 -0.9113 35 1 4.5833 -6.3158 -0.0083 36 1 2.9472 -5.7320 0.3816 37 1 5.1053 -6.7901 4.2800 38 1 4.7549 -9.1421 4.9872 39 1 3.5440 -10.6817 3.4636 40 1 0.8634 -9.9466 -1.6786 41 1 2.4319 -4.9818 2.5931 42 1 3.6818 -5.0033 3.8609 43 1 4.8956 -3.1850 2.7609 44 1 3.1948 -2.6899 2.9680 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647108373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:40 Heat of formation + Delta-G solvation = 61.959559 kcal Electronic energy + Delta-G solvation = -26549.208312 eV Core-core repulsion = 23013.224358 eV Total energy + Delta-G solvation = -3535.983954 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 332.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.44353 -39.88928 -38.57175 -36.53005 -35.42148 -33.46473 -33.19120 -32.34807 -31.51372 -28.80308 -27.56259 -26.66239 -25.29901 -24.13770 -23.43322 -22.76069 -21.95377 -20.53195 -19.67315 -19.13317 -18.32217 -17.16598 -16.77511 -16.69018 -16.53824 -16.34779 -16.18114 -16.13135 -15.77724 -15.21825 -14.76170 -14.68926 -14.58664 -14.32341 -14.26157 -13.67650 -13.62190 -13.30167 -13.25983 -12.93756 -12.85390 -12.67465 -12.50784 -12.42695 -12.41054 -12.29076 -12.13264 -12.00954 -11.50788 -11.41599 -10.61379 -10.30927 -10.20767 -9.70013 -9.37648 -9.11516 -8.93457 -8.84483 -6.74866 0.14024 0.59307 0.81250 0.94173 1.10087 1.33460 1.43259 1.52410 1.78546 2.26527 2.46321 2.70220 3.35434 3.51993 3.54642 3.72500 3.77200 3.86358 3.98906 4.08823 4.17405 4.21783 4.25817 4.36934 4.41957 4.56002 4.57412 4.61319 4.68137 4.71929 4.75185 4.76761 4.78125 4.83694 4.89603 4.91179 5.15214 5.19115 5.41962 5.52412 5.66566 5.72234 5.81780 5.99819 6.09417 6.22601 6.55770 6.68825 6.83075 7.59812 8.02128 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.015337 B = 0.003937 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.159360 B = 7110.626647 C = 8257.566369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.070 4.070 3 H 0.138 0.862 4 C 0.067 3.933 5 N -0.645 5.645 6 C 0.431 3.569 7 N -0.591 5.591 8 C 0.146 3.854 9 C 0.047 3.953 10 N -0.469 5.469 11 C 0.317 3.683 12 C -0.277 4.277 13 C -0.028 4.028 14 C -0.285 4.285 15 C 0.248 3.752 16 C -0.452 4.452 17 H 0.075 0.925 18 C 0.052 3.948 19 N -0.837 5.837 20 Si 1.053 2.947 21 H -0.265 1.265 22 H -0.340 1.340 23 H -0.290 1.290 24 N -0.612 5.612 25 C 0.048 3.952 26 C 0.141 3.859 27 S -0.216 6.216 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.024 0.976 37 H 0.145 0.855 38 H 0.152 0.848 39 H 0.115 0.885 40 H 0.294 0.706 41 H 0.018 0.982 42 H 0.120 0.880 43 H 0.106 0.894 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.303 22.475 4.791 23.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.201 4.201 3 H 0.156 0.844 4 C -0.066 4.066 5 N -0.377 5.377 6 C 0.045 3.955 7 N -0.312 5.312 8 C 0.021 3.979 9 C -0.081 4.081 10 N -0.189 5.189 11 C 0.085 3.915 12 C -0.301 4.301 13 C -0.052 4.052 14 C -0.307 4.307 15 C 0.122 3.878 16 C -0.484 4.484 17 H 0.093 0.907 18 C -0.166 4.166 19 N -0.463 5.463 20 Si 0.891 3.109 21 H -0.191 1.191 22 H -0.274 1.274 23 H -0.219 1.219 24 N -0.336 5.336 25 C -0.079 4.079 26 C 0.019 3.981 27 S 0.010 5.990 28 H 0.092 0.908 29 H 0.115 0.885 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.121 0.879 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.042 0.958 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.133 0.867 40 H 0.104 0.896 41 H 0.036 0.964 42 H 0.138 0.862 43 H 0.124 0.876 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.531 22.573 4.305 23.119 hybrid contribution -1.048 -0.582 -0.644 1.361 sum 1.483 21.991 3.661 22.343 Atomic orbital electron populations 1.21907 0.90180 1.02679 1.04279 1.24831 1.01192 1.02452 0.91639 0.84425 1.22640 0.97273 0.89423 0.97273 1.69942 1.28928 1.24725 1.14091 1.23677 0.91191 0.90605 0.90013 1.46239 1.52794 1.25274 1.06886 1.21667 0.97768 0.84279 0.94181 1.22738 0.99263 0.97661 0.88480 1.59589 1.52723 1.02058 1.04550 1.19958 0.90908 0.89312 0.91356 1.21126 1.13143 0.97882 0.97921 1.21352 0.92913 0.92488 0.98455 1.21781 1.11170 1.01216 0.96538 1.18486 0.90029 0.87642 0.91606 1.19504 1.26800 0.95092 1.07026 0.90703 1.26864 0.91372 1.05427 0.92897 1.69636 1.26910 1.40041 1.09714 0.84101 0.74355 0.76540 0.75938 1.19130 1.27431 1.21890 1.66580 1.23621 1.06176 1.37243 1.22678 0.93963 0.91829 0.99439 1.21922 1.04300 0.94442 0.77436 1.86464 1.63499 1.30581 1.18411 0.90798 0.88481 0.93335 0.88877 0.87856 0.88931 0.89240 0.90591 0.95788 0.83713 0.83041 0.86723 0.89603 0.96396 0.86234 0.87587 0.88056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 9.08 71.98 0.65 -1.07 16 2 C -0.07 -1.12 3.99 30.82 0.12 -1.00 16 3 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 4 C 0.07 1.32 7.24 86.96 0.63 1.95 16 5 N -0.64 -18.22 9.91 -350.57 -3.47 -21.69 16 6 C 0.43 11.91 7.98 180.02 1.44 13.34 16 7 N -0.59 -16.46 3.09 -703.18 -2.17 -18.63 16 8 C 0.15 4.40 6.66 86.35 0.58 4.97 16 9 C 0.05 1.79 3.61 86.38 0.31 2.10 16 10 N -0.47 -16.60 4.61 -700.84 -3.23 -19.83 16 11 C 0.32 13.29 6.10 133.42 0.81 14.11 16 12 C -0.28 -10.01 9.32 22.73 0.21 -9.80 16 13 C -0.03 -1.02 10.15 22.39 0.23 -0.79 16 14 C -0.28 -12.74 9.83 22.87 0.22 -12.52 16 15 C 0.25 12.94 6.26 40.18 0.25 13.19 16 16 C -0.45 -25.88 9.70 23.46 0.23 -25.65 16 17 H 0.07 4.44 8.06 -2.91 -0.02 4.41 16 18 C 0.05 2.96 5.52 85.29 0.47 3.43 16 19 N -0.84 -47.68 13.92 21.84 0.30 -47.37 16 20 Si 1.05 53.61 22.35 68.60 1.53 55.15 16 21 H -0.26 -13.01 5.38 99.48 0.53 -12.48 16 22 H -0.34 -17.13 7.11 99.48 0.71 -16.42 16 23 H -0.29 -15.41 6.28 99.48 0.62 -14.79 16 24 N -0.61 -30.46 3.78 -186.59 -0.71 -31.17 16 25 C 0.05 1.39 5.50 86.38 0.48 1.87 16 26 C 0.14 3.25 6.63 86.35 0.57 3.82 16 27 S -0.22 -4.77 21.08 -56.49 -1.19 -5.96 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 1.78 7.65 -2.39 -0.02 1.76 16 32 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.09 2.83 7.28 -2.39 -0.02 2.81 16 35 H 0.08 3.15 7.43 -2.39 -0.02 3.13 16 36 H 0.02 1.05 4.10 -2.39 -0.01 1.04 16 37 H 0.15 4.17 7.93 -2.91 -0.02 4.15 16 38 H 0.15 4.19 8.06 -2.91 -0.02 4.16 16 39 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 40 H 0.29 15.33 8.29 -92.71 -0.77 14.56 16 41 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.12 2.88 7.44 -2.39 -0.02 2.87 16 43 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.10 2.07 6.55 -2.39 -0.02 2.05 16 Total: -1.00 -67.80 351.06 -0.97 -68.77 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.75 Total: 12.79 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 7.21 Total: 7.95 kcal Atomic # 7 Polarization: -129.42 SS G_CDS: -9.28 Total: -138.70 kcal Atomic # 14 Polarization: 53.61 SS G_CDS: 1.53 Total: 55.15 kcal Atomic # 16 Polarization: -4.77 SS G_CDS: -1.19 Total: -5.96 kcal Total: -67.80 -0.97 -68.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647108373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.731 kcal (2) G-P(sol) polarization free energy of solvation -67.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds