Wall clock time and date at job start Tue Mar 31 2020 16:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.46619 * 2 1 4 4 O 1.21280 * 120.00234 * 0.02562 * 3 2 1 5 5 N 1.34770 * 119.99509 * 179.97438 * 3 2 1 6 6 C 1.47429 * 125.65269 * 359.69682 * 5 3 2 7 7 C 1.55126 * 104.72470 * 155.81565 * 6 5 3 8 8 C 1.55149 * 101.48774 * 37.29480 * 7 6 5 9 9 H 1.08998 * 110.87788 * 82.76868 * 8 7 6 10 10 C 1.50701 * 110.72246 * 205.97056 * 8 7 6 11 11 O 1.21294 * 120.00173 * 113.52049 * 10 8 7 12 12 N 1.34774 * 119.99804 * 293.52443 * 10 8 7 13 13 C 1.39993 * 119.99977 * 175.48751 * 12 10 8 14 14 C 1.38927 * 120.00216 * 214.84531 * 13 12 10 15 15 C 1.37996 * 119.99787 * 179.76672 * 14 13 12 16 16 C 1.38913 * 120.00157 * 0.51155 * 15 14 13 17 17 O 1.35783 * 119.99954 * 179.76655 * 16 15 14 18 18 C 1.34808 * 117.00052 * 185.32110 * 17 16 15 19 19 H 1.08001 * 119.99938 * 354.96086 * 18 17 16 20 20 C 1.38628 * 119.99965 * 174.95978 * 18 17 16 21 21 N 1.31580 * 120.00155 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00141 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47471 * 89.99612 * 22 20 18 24 24 H 1.48495 * 109.47214 * 209.99659 * 22 20 18 25 25 H 1.48499 * 109.47225 * 329.99748 * 22 20 18 26 26 C 1.38906 * 120.00280 * 359.74204 * 16 15 14 27 27 C 1.38005 * 120.00147 * 0.02562 * 26 16 15 28 28 C 1.47026 * 125.65094 * 179.97438 * 5 3 2 29 29 H 1.08999 * 109.47076 * 299.99397 * 1 2 3 30 30 H 1.09003 * 109.46801 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47184 * 60.00239 * 1 2 3 32 32 H 1.08996 * 109.47184 * 119.99761 * 2 1 3 33 33 H 1.08999 * 109.46814 * 240.00120 * 2 1 3 34 34 H 1.09002 * 110.36204 * 274.74361 * 6 5 3 35 35 H 1.08996 * 110.36337 * 37.06377 * 6 5 3 36 36 H 1.08995 * 111.18970 * 279.18701 * 7 6 5 37 37 H 1.09006 * 110.94007 * 155.28975 * 7 6 5 38 38 H 0.97000 * 120.00103 * 355.48323 * 12 10 8 39 39 H 1.08000 * 119.99707 * 0.02883 * 14 13 12 40 40 H 1.08002 * 120.00028 * 180.25814 * 15 14 13 41 41 H 0.96996 * 119.99931 * 180.02562 * 21 20 18 42 42 H 1.08004 * 120.00019 * 179.97438 * 26 16 15 43 43 H 1.08001 * 119.99985 * 180.02562 * 27 26 16 44 44 H 1.09000 * 109.88112 * 300.44449 * 28 5 3 45 45 H 1.09001 * 109.87811 * 61.45083 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6672 0.0005 6 6 4.4210 0.6464 0.0075 7 6 5.6540 1.3576 -0.6093 8 6 5.5100 2.7877 -0.0251 9 1 5.9234 2.8393 0.9821 10 6 6.1727 3.8000 -0.9236 11 8 5.5016 4.6275 -1.5035 12 7 7.5109 3.7857 -1.0830 13 6 8.1173 4.6636 -1.9893 14 6 9.2390 4.2601 -2.7026 15 6 9.8338 5.1239 -3.5996 16 6 9.3173 6.4005 -3.7813 17 8 9.9054 7.2520 -4.6604 18 6 9.4239 8.5102 -4.7091 19 1 8.5549 8.7788 -4.1268 20 6 10.0442 9.4594 -5.5067 21 7 9.5740 10.6873 -5.5547 22 14 11.5468 8.9947 -6.5145 23 1 11.1166 8.5135 -7.8519 24 1 12.4226 10.1832 -6.6743 25 1 12.2960 7.9178 -5.8185 26 6 8.1989 6.8059 -3.0643 27 6 7.6010 5.9405 -2.1708 28 6 3.9815 2.9983 0.0001 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 4.6348 0.3283 1.0279 35 1 4.1310 -0.2078 -0.6042 36 1 5.5967 1.3725 -1.6976 37 1 6.5806 0.8906 -0.2753 38 1 8.0539 3.1672 -0.5696 39 1 9.6430 3.2690 -2.5583 40 1 10.7034 4.8087 -4.1572 41 1 10.0078 11.3513 -6.1131 42 1 7.7975 7.7986 -3.2053 43 1 6.7312 6.2556 -1.6136 44 1 3.6690 3.5539 -0.8841 45 1 3.6948 3.5424 0.9000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649725436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:37 Heat of formation + Delta-G solvation = -66.562981 kcal Electronic energy + Delta-G solvation = -27330.429832 eV Core-core repulsion = 23313.827100 eV Total energy + Delta-G solvation = -4016.602732 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.89901 -39.91990 -38.92434 -37.59150 -36.55845 -34.15416 -33.27754 -32.38339 -31.99036 -30.33562 -29.59692 -28.28499 -25.84831 -25.05654 -23.33406 -22.99103 -22.28664 -21.06503 -19.98276 -19.50803 -18.26385 -17.73407 -17.50533 -17.39565 -16.63022 -16.16944 -15.75320 -15.35402 -14.99938 -14.56795 -14.26206 -14.07343 -13.97153 -13.83706 -13.78761 -13.44445 -13.21986 -12.83739 -12.66645 -12.58396 -12.46372 -12.34818 -12.24474 -12.02433 -11.93547 -11.69810 -11.60730 -11.56941 -11.32735 -10.98011 -10.76322 -10.27512 -10.13340 -9.82947 -9.71082 -9.27909 -8.98731 -8.78923 -8.32805 -7.11479 -6.42137 -4.08250 1.91892 2.07555 2.34770 2.51743 2.67482 3.16166 3.22026 3.24792 3.38511 3.87436 3.97947 4.22411 4.30019 4.39874 4.47730 4.65899 4.68974 4.77423 4.78342 4.82118 4.84794 4.97528 5.09303 5.14917 5.25129 5.40851 5.45894 5.50223 5.55713 5.57553 5.61157 5.77393 5.83553 5.92881 6.03646 6.05777 6.19864 6.54272 6.71893 6.84779 7.05166 7.14107 7.26895 7.49696 7.59054 7.77951 7.86654 8.00987 8.21456 8.92442 9.53536 10.65316 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026305 B = 0.002003 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.200039 B =13978.170672 C =14564.345276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.138 4.138 3 C 0.525 3.475 4 O -0.535 6.535 5 N -0.623 5.623 6 C 0.100 3.900 7 C -0.123 4.123 8 C -0.121 4.121 9 H 0.113 0.887 10 C 0.515 3.485 11 O -0.517 6.517 12 N -0.657 5.657 13 C 0.040 3.960 14 C -0.094 4.094 15 C -0.178 4.178 16 C 0.152 3.848 17 O -0.215 6.215 18 C -0.389 4.389 19 H 0.107 0.893 20 C 0.063 3.937 21 N -0.878 5.878 22 Si 0.907 3.093 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.260 1.260 26 C -0.207 4.207 27 C -0.066 4.066 28 C 0.118 3.882 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.402 0.598 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.280 0.720 42 H 0.137 0.863 43 H 0.128 0.872 44 H 0.093 0.907 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.336 -25.607 14.051 30.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.178 4.178 3 C 0.314 3.686 4 O -0.412 6.412 5 N -0.358 5.358 6 C -0.023 4.023 7 C -0.161 4.161 8 C -0.143 4.143 9 H 0.131 0.869 10 C 0.301 3.699 11 O -0.392 6.392 12 N -0.301 5.301 13 C -0.053 4.053 14 C -0.115 4.115 15 C -0.198 4.198 16 C 0.100 3.900 17 O -0.120 6.120 18 C -0.465 4.465 19 H 0.125 0.875 20 C -0.141 4.141 21 N -0.515 5.515 22 Si 0.732 3.268 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.227 4.227 27 C -0.086 4.086 28 C -0.004 4.004 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.237 0.763 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.090 0.910 42 H 0.154 0.846 43 H 0.145 0.855 44 H 0.111 0.889 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.168 -24.331 13.377 28.942 hybrid contribution 0.988 -0.286 -0.140 1.038 sum -7.180 -24.616 13.238 28.858 Atomic orbital electron populations 1.21550 0.92871 1.01643 1.03536 1.21617 0.98664 0.93374 1.04180 1.20510 0.80154 0.92043 0.75931 1.90739 1.54236 1.46764 1.49413 1.48546 1.05303 1.07884 1.74081 1.22410 0.86855 0.91813 1.01203 1.22849 0.98535 0.92813 1.01903 1.22299 0.96367 0.95152 1.00481 0.86947 1.20203 0.82170 0.85199 0.82377 1.90756 1.63270 1.37881 1.47283 1.43141 1.06569 1.38719 1.41718 1.17301 0.98493 0.90708 0.98750 1.20334 0.96279 0.98527 0.96318 1.19984 1.03338 0.92862 1.03614 1.19161 0.91554 0.90295 0.89024 1.83561 1.55268 1.21853 1.51346 1.20781 1.14087 0.82232 1.29357 0.87546 1.24481 0.98674 0.93872 0.97043 1.69659 1.40818 1.02165 1.38876 0.86164 0.81806 0.78410 0.80408 1.19886 1.20813 1.18357 1.21240 0.98541 1.01812 1.01093 1.20918 0.98935 0.90991 0.97726 1.21793 0.89464 0.84796 1.04385 0.91938 0.91980 0.91849 0.88998 0.88941 0.90684 0.90004 0.89592 0.88709 0.76301 0.86561 0.86054 0.91017 0.84551 0.85458 0.88914 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.20 37.16 0.34 -0.61 16 2 C -0.14 -0.86 5.42 -27.88 -0.15 -1.01 16 3 C 0.52 5.54 7.85 -10.99 -0.09 5.45 16 4 O -0.54 -8.12 16.31 5.56 0.09 -8.03 16 5 N -0.62 -5.59 3.33 -170.38 -0.57 -6.16 16 6 C 0.10 0.48 6.70 -2.41 -0.02 0.46 16 7 C -0.12 -0.64 6.53 -24.47 -0.16 -0.80 16 8 C -0.12 -0.95 3.34 -89.94 -0.30 -1.25 16 9 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 10 C 0.51 6.38 6.98 -10.99 -0.08 6.30 16 11 O -0.52 -8.99 12.86 5.55 0.07 -8.91 16 12 N -0.66 -7.62 5.34 -9.82 -0.05 -7.68 16 13 C 0.04 0.64 6.30 -83.62 -0.53 0.12 16 14 C -0.09 -1.47 9.96 -39.41 -0.39 -1.86 16 15 C -0.18 -3.36 9.98 -39.42 -0.39 -3.75 16 16 C 0.15 3.48 6.65 -39.08 -0.26 3.22 16 17 O -0.22 -5.64 8.58 0.01 0.00 -5.64 16 18 C -0.39 -10.99 9.94 30.88 0.31 -10.68 16 19 H 0.11 3.10 5.43 -52.49 -0.28 2.81 16 20 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 21 N -0.88 -25.46 13.96 55.48 0.77 -24.68 16 22 Si 0.91 21.57 28.62 -169.99 -4.86 16.70 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 25 H -0.26 -6.14 7.11 56.52 0.40 -5.73 16 26 C -0.21 -4.60 9.16 -39.42 -0.36 -4.96 16 27 C -0.07 -1.28 8.69 -39.41 -0.34 -1.62 16 28 C 0.12 1.26 6.29 -3.06 -0.02 1.24 16 29 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.53 8.10 -51.93 -0.42 0.10 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.42 7.85 -51.93 -0.41 0.01 16 34 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.08 0.26 7.48 -51.93 -0.39 -0.13 16 36 H 0.09 0.59 8.04 -51.93 -0.42 0.18 16 37 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.40 2.99 8.82 -40.82 -0.36 2.63 16 39 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 41 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.14 3.22 5.63 -52.48 -0.30 2.92 16 43 H 0.13 2.50 6.22 -52.49 -0.33 2.17 16 44 H 0.09 1.31 6.80 -51.93 -0.35 0.96 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 374.56 15.07 5.64 5.64 Total: -1.00 -35.61 374.56 -7.63 -43.24 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -6.19 Total: 3.61 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -2.53 Total: -8.09 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.16 Total: -38.52 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: 0.16 Total: -22.59 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.86 Total: 16.70 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.61 -7.63 -43.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649725436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.322 kcal (2) G-P(sol) polarization free energy of solvation -35.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds