Wall clock time and date at job start Tue Mar 31 2020 16:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.46619 * 2 1 4 4 O 1.21280 * 120.00234 * 0.02562 * 3 2 1 5 5 N 1.34770 * 119.99509 * 179.97438 * 3 2 1 6 6 C 1.47429 * 125.65269 * 359.69682 * 5 3 2 7 7 C 1.55126 * 104.72470 * 155.81565 * 6 5 3 8 8 C 1.55149 * 101.48774 * 37.29480 * 7 6 5 9 9 H 1.08998 * 110.87788 * 82.76868 * 8 7 6 10 10 C 1.50701 * 110.72246 * 205.97056 * 8 7 6 11 11 O 1.21294 * 120.00173 * 113.52049 * 10 8 7 12 12 N 1.34774 * 119.99804 * 293.52443 * 10 8 7 13 13 C 1.39993 * 119.99977 * 175.48751 * 12 10 8 14 14 C 1.38927 * 120.00216 * 214.84531 * 13 12 10 15 15 C 1.37996 * 119.99787 * 179.76672 * 14 13 12 16 16 C 1.38913 * 120.00157 * 0.51155 * 15 14 13 17 17 O 1.35783 * 119.99954 * 179.76655 * 16 15 14 18 18 C 1.34808 * 117.00052 * 185.32110 * 17 16 15 19 19 H 1.08001 * 119.99938 * 354.96086 * 18 17 16 20 20 C 1.38628 * 119.99965 * 174.95978 * 18 17 16 21 21 N 1.31580 * 120.00155 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00141 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47471 * 89.99612 * 22 20 18 24 24 H 1.48495 * 109.47214 * 209.99659 * 22 20 18 25 25 H 1.48499 * 109.47225 * 329.99748 * 22 20 18 26 26 C 1.38906 * 120.00280 * 359.74204 * 16 15 14 27 27 C 1.38005 * 120.00147 * 0.02562 * 26 16 15 28 28 C 1.47026 * 125.65094 * 179.97438 * 5 3 2 29 29 H 1.08999 * 109.47076 * 299.99397 * 1 2 3 30 30 H 1.09003 * 109.46801 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47184 * 60.00239 * 1 2 3 32 32 H 1.08996 * 109.47184 * 119.99761 * 2 1 3 33 33 H 1.08999 * 109.46814 * 240.00120 * 2 1 3 34 34 H 1.09002 * 110.36204 * 274.74361 * 6 5 3 35 35 H 1.08996 * 110.36337 * 37.06377 * 6 5 3 36 36 H 1.08995 * 111.18970 * 279.18701 * 7 6 5 37 37 H 1.09006 * 110.94007 * 155.28975 * 7 6 5 38 38 H 0.97000 * 120.00103 * 355.48323 * 12 10 8 39 39 H 1.08000 * 119.99707 * 0.02883 * 14 13 12 40 40 H 1.08002 * 120.00028 * 180.25814 * 15 14 13 41 41 H 0.96996 * 119.99931 * 180.02562 * 21 20 18 42 42 H 1.08004 * 120.00019 * 179.97438 * 26 16 15 43 43 H 1.08001 * 119.99985 * 180.02562 * 27 26 16 44 44 H 1.09000 * 109.88112 * 300.44449 * 28 5 3 45 45 H 1.09001 * 109.87811 * 61.45083 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6672 0.0005 6 6 4.4210 0.6464 0.0075 7 6 5.6540 1.3576 -0.6093 8 6 5.5100 2.7877 -0.0251 9 1 5.9234 2.8393 0.9821 10 6 6.1727 3.8000 -0.9236 11 8 5.5016 4.6275 -1.5035 12 7 7.5109 3.7857 -1.0830 13 6 8.1173 4.6636 -1.9893 14 6 9.2390 4.2601 -2.7026 15 6 9.8338 5.1239 -3.5996 16 6 9.3173 6.4005 -3.7813 17 8 9.9054 7.2520 -4.6604 18 6 9.4239 8.5102 -4.7091 19 1 8.5549 8.7788 -4.1268 20 6 10.0442 9.4594 -5.5067 21 7 9.5740 10.6873 -5.5547 22 14 11.5468 8.9947 -6.5145 23 1 11.1166 8.5135 -7.8519 24 1 12.4226 10.1832 -6.6743 25 1 12.2960 7.9178 -5.8185 26 6 8.1989 6.8059 -3.0643 27 6 7.6010 5.9405 -2.1708 28 6 3.9815 2.9983 0.0001 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 4.6348 0.3283 1.0279 35 1 4.1310 -0.2078 -0.6042 36 1 5.5967 1.3725 -1.6976 37 1 6.5806 0.8906 -0.2753 38 1 8.0539 3.1672 -0.5696 39 1 9.6430 3.2690 -2.5583 40 1 10.7034 4.8087 -4.1572 41 1 10.0078 11.3513 -6.1131 42 1 7.7975 7.7986 -3.2053 43 1 6.7312 6.2556 -1.6136 44 1 3.6690 3.5539 -0.8841 45 1 3.6948 3.5424 0.9000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649725436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:36 Heat of formation + Delta-G solvation = -92.718045 kcal Electronic energy + Delta-G solvation = -27331.564001 eV Core-core repulsion = 23313.827100 eV Total energy + Delta-G solvation = -4017.736901 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.87793 -41.01381 -40.39669 -38.65857 -37.87976 -35.48888 -34.40148 -33.92386 -32.73194 -31.89781 -30.24212 -29.70875 -27.31223 -26.31800 -24.37047 -23.80329 -23.46377 -22.41650 -21.03512 -20.16901 -19.94366 -19.28875 -18.60769 -18.27476 -18.01543 -17.00572 -16.58590 -16.53615 -16.23831 -15.85956 -15.67727 -15.52790 -15.43268 -15.05733 -14.64136 -14.44841 -14.31772 -14.18707 -13.96354 -13.84523 -13.46070 -13.31162 -13.27790 -13.14976 -12.89276 -12.75581 -12.59896 -12.49532 -12.34675 -12.07450 -12.01271 -11.83630 -11.50682 -11.17830 -10.96234 -10.85614 -10.62610 -9.87531 -9.71879 -8.69661 -8.50507 -6.23453 0.45513 0.50361 1.31977 1.36671 1.52870 1.56133 1.59617 1.78547 2.23298 2.28215 2.75146 3.01959 3.15530 3.23448 3.44545 3.69644 3.77850 4.05387 4.08873 4.16696 4.20933 4.23395 4.26715 4.33993 4.45236 4.60283 4.61877 4.69351 4.74513 4.79300 4.86268 4.95592 4.99839 5.03991 5.05125 5.15928 5.19428 5.23476 5.35860 5.36333 5.47702 5.58656 5.74139 5.90023 6.18782 6.46275 6.52791 6.82790 7.12064 7.21875 7.55238 8.61388 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026305 B = 0.002003 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.200039 B =13978.170672 C =14564.345276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.128 4.128 3 C 0.510 3.490 4 O -0.600 6.600 5 N -0.622 5.622 6 C 0.095 3.905 7 C -0.115 4.115 8 C -0.103 4.103 9 H 0.155 0.845 10 C 0.513 3.487 11 O -0.574 6.574 12 N -0.639 5.639 13 C 0.070 3.930 14 C -0.073 4.073 15 C -0.167 4.167 16 C 0.111 3.889 17 O -0.240 6.240 18 C -0.401 4.401 19 H 0.073 0.927 20 C 0.005 3.995 21 N -0.926 5.926 22 Si 0.978 3.022 23 H -0.266 1.266 24 H -0.268 1.268 25 H -0.255 1.255 26 C -0.227 4.227 27 C -0.085 4.085 28 C 0.113 3.887 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.038 0.962 32 H 0.126 0.874 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.067 0.933 37 H 0.142 0.858 38 H 0.432 0.568 39 H 0.180 0.820 40 H 0.146 0.854 41 H 0.285 0.715 42 H 0.100 0.900 43 H 0.117 0.883 44 H 0.044 0.956 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.730 -32.048 15.808 36.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.167 4.167 3 C 0.301 3.699 4 O -0.481 6.481 5 N -0.356 5.356 6 C -0.025 4.025 7 C -0.153 4.153 8 C -0.125 4.125 9 H 0.172 0.828 10 C 0.301 3.699 11 O -0.452 6.452 12 N -0.286 5.286 13 C -0.023 4.023 14 C -0.093 4.093 15 C -0.187 4.187 16 C 0.062 3.938 17 O -0.147 6.147 18 C -0.477 4.477 19 H 0.091 0.909 20 C -0.193 4.193 21 N -0.567 5.567 22 Si 0.800 3.200 23 H -0.191 1.191 24 H -0.193 1.193 25 H -0.179 1.179 26 C -0.247 4.247 27 C -0.105 4.105 28 C -0.011 4.011 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.057 0.943 32 H 0.144 0.856 33 H 0.136 0.864 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.086 0.914 37 H 0.160 0.840 38 H 0.272 0.728 39 H 0.197 0.803 40 H 0.164 0.836 41 H 0.094 0.906 42 H 0.118 0.882 43 H 0.135 0.865 44 H 0.062 0.938 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.528 -30.882 15.199 34.861 hybrid contribution -0.045 1.461 -0.433 1.524 sum -5.573 -29.422 14.767 33.388 Atomic orbital electron populations 1.21569 0.93888 1.02779 1.01551 1.21682 0.97713 0.90422 1.06857 1.21498 0.80248 0.93373 0.74748 1.90708 1.56021 1.48945 1.52413 1.48705 1.05873 1.08221 1.72813 1.22821 0.84893 0.91087 1.03738 1.22978 1.01000 0.90477 1.00845 1.22291 0.93373 0.95337 1.01474 0.82784 1.21108 0.82021 0.84999 0.81776 1.90771 1.64578 1.40362 1.49520 1.43022 1.06664 1.38020 1.40927 1.17443 0.97541 0.89565 0.97800 1.20896 0.94649 1.00227 0.93533 1.20450 1.03612 0.90984 1.03633 1.19730 0.92375 0.91774 0.89946 1.83497 1.56364 1.21056 1.53791 1.20657 1.13625 0.83926 1.29495 0.90948 1.25395 1.01957 0.93646 0.98257 1.69761 1.42873 1.03373 1.40683 0.85109 0.77836 0.78497 0.78591 1.19126 1.19295 1.17924 1.21115 0.99543 1.01165 1.02886 1.20914 0.99099 0.92706 0.97794 1.21649 0.92003 0.85807 1.01624 0.93669 0.89089 0.94260 0.85616 0.86416 0.87320 0.87581 0.91402 0.83989 0.72809 0.80270 0.83620 0.90559 0.88159 0.86547 0.93783 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.20 71.98 0.66 -1.11 16 2 C -0.13 -1.21 5.42 29.85 0.16 -1.05 16 3 C 0.51 10.44 7.85 87.66 0.69 11.13 16 4 O -0.60 -19.41 16.31 -3.03 -0.05 -19.46 16 5 N -0.62 -9.95 3.33 -811.35 -2.70 -12.65 16 6 C 0.10 0.38 6.70 86.93 0.58 0.97 16 7 C -0.12 -0.54 6.53 32.06 0.21 -0.33 16 8 C -0.10 -1.25 3.34 -10.36 -0.03 -1.29 16 9 H 0.15 0.72 8.14 -2.39 -0.02 0.70 16 10 C 0.51 11.62 6.98 87.66 0.61 12.23 16 11 O -0.57 -20.57 12.86 -3.07 -0.04 -20.61 16 12 N -0.64 -12.05 5.34 -303.37 -1.62 -13.67 16 13 C 0.07 2.08 6.30 38.17 0.24 2.32 16 14 C -0.07 -1.92 9.96 22.38 0.22 -1.70 16 15 C -0.17 -5.87 9.98 22.37 0.22 -5.64 16 16 C 0.11 5.23 6.65 22.59 0.15 5.38 16 17 O -0.24 -13.11 8.58 -22.88 -0.20 -13.30 16 18 C -0.40 -24.36 9.94 67.91 0.68 -23.68 16 19 H 0.07 4.73 5.43 -2.91 -0.02 4.71 16 20 C 0.01 0.32 5.49 84.82 0.47 0.79 16 21 N -0.93 -56.94 13.96 21.61 0.30 -56.64 16 22 Si 0.98 45.68 28.62 68.60 1.96 47.64 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 26 C -0.23 -10.86 9.16 22.37 0.20 -10.65 16 27 C -0.08 -3.41 8.69 22.38 0.19 -3.22 16 28 C 0.11 2.37 6.29 86.73 0.55 2.92 16 29 H 0.04 0.72 8.10 -2.39 -0.02 0.70 16 30 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.04 0.67 8.10 -2.39 -0.02 0.65 16 32 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.12 0.56 7.85 -2.39 -0.02 0.55 16 34 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 35 H 0.11 0.00 7.48 -2.39 -0.02 -0.02 16 36 H 0.07 0.63 8.04 -2.39 -0.02 0.61 16 37 H 0.14 -0.55 8.14 -2.38 -0.02 -0.57 16 38 H 0.43 3.40 8.82 -92.71 -0.82 2.58 16 39 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 40 H 0.15 4.43 8.06 -2.91 -0.02 4.40 16 41 H 0.28 15.99 8.31 -92.71 -0.77 15.22 16 42 H 0.10 5.42 5.63 -2.91 -0.02 5.40 16 43 H 0.12 4.90 6.22 -2.91 -0.02 4.88 16 44 H 0.04 1.36 6.80 -2.39 -0.02 1.34 16 45 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -92.55 374.56 3.67 -88.88 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.21 Total: 12.75 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 5.80 Total: -12.94 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -4.02 Total: -82.96 kcal Atomic # 8 Polarization: -53.09 SS G_CDS: -0.29 Total: -53.37 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.96 Total: 47.64 kcal Total: -92.55 3.67 -88.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649725436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.839 kcal (2) G-P(sol) polarization free energy of solvation -92.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds