Wall clock time and date at job start Tue Mar 31 2020 16:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47216 * 2 1 4 4 O 1.21285 * 119.99735 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00487 * 179.97438 * 3 2 1 6 6 C 1.47023 * 125.64638 * 0.03586 * 5 3 2 7 7 C 1.54317 * 107.27333 * 178.89273 * 6 5 3 8 8 C 1.55164 * 102.94069 * 337.80071 * 7 6 5 9 9 H 1.08997 * 111.00493 * 277.39260 * 8 7 6 10 10 C 1.50701 * 111.00113 * 153.57984 * 8 7 6 11 11 O 1.21297 * 119.99753 * 241.44982 * 10 8 7 12 12 N 1.34771 * 120.00280 * 61.45533 * 10 8 7 13 13 C 1.39993 * 120.00240 * 175.48906 * 12 10 8 14 14 C 1.38914 * 120.00474 * 215.12360 * 13 12 10 15 15 C 1.38010 * 120.00040 * 180.02562 * 14 13 12 16 16 C 1.38911 * 119.99690 * 359.97093 * 15 14 13 17 17 O 1.35782 * 119.99330 * 180.02562 * 16 15 14 18 18 C 1.34808 * 117.00227 * 5.35132 * 17 16 15 19 19 H 1.08007 * 119.99966 * 354.95779 * 18 17 16 20 20 C 1.38631 * 120.00265 * 174.95845 * 18 17 16 21 21 N 1.31570 * 119.99675 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00145 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47288 * 270.00006 * 22 20 18 24 24 H 1.48498 * 109.46911 * 150.00221 * 22 20 18 25 25 H 1.48499 * 109.46947 * 30.00447 * 22 20 18 26 26 C 1.38908 * 120.00414 * 0.30125 * 16 15 14 27 27 C 1.38000 * 119.99899 * 359.44960 * 26 16 15 28 28 C 1.47424 * 125.65259 * 179.97438 * 5 3 2 29 29 H 1.08995 * 109.46963 * 299.99412 * 1 2 3 30 30 H 1.09000 * 109.47393 * 59.99417 * 1 2 3 31 31 H 1.08998 * 109.47233 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47163 * 240.00686 * 2 1 3 33 33 H 1.09000 * 109.47393 * 120.00582 * 2 1 3 34 34 H 1.08998 * 109.88294 * 59.46559 * 6 5 3 35 35 H 1.09003 * 109.87725 * 298.30466 * 6 5 3 36 36 H 1.08999 * 110.72114 * 219.43828 * 7 6 5 37 37 H 1.08999 * 110.72158 * 96.16648 * 7 6 5 38 38 H 0.97008 * 119.99984 * 355.49480 * 12 10 8 39 39 H 1.08002 * 120.00259 * 0.02562 * 14 13 12 40 40 H 1.08000 * 119.99961 * 180.02562 * 15 14 13 41 41 H 0.97004 * 120.00696 * 0.02562 * 21 20 18 42 42 H 1.08002 * 119.99771 * 179.69742 * 26 16 15 43 43 H 1.08009 * 119.99914 * 180.27307 * 27 26 16 44 44 H 1.08996 * 110.36530 * 85.33680 * 28 5 3 45 45 H 1.09003 * 110.36505 * 323.01403 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.4182 0.6491 0.0004 7 6 5.7689 1.3949 -0.0273 8 6 5.3887 2.7807 -0.6125 9 1 5.3401 2.7453 -1.7008 10 6 6.3522 3.8441 -0.1520 11 8 5.9521 4.7807 0.5068 12 7 7.6582 3.7546 -0.4723 13 6 8.5363 4.7886 -0.1264 14 6 9.5895 5.1172 -0.9704 15 6 10.4554 6.1362 -0.6290 16 6 10.2733 6.8336 0.5584 17 8 11.1249 7.8365 0.8939 18 6 12.0571 8.1786 -0.0178 19 1 12.1549 7.6089 -0.9301 20 6 12.8904 9.2617 0.2156 21 7 12.7710 9.9561 1.3268 22 14 14.1826 9.7353 -1.0474 23 1 15.4480 9.0156 -0.7548 24 1 14.4207 11.1998 -0.9867 25 1 13.7062 9.3672 -2.4049 26 6 9.2235 6.5014 1.4052 27 6 8.3546 5.4859 1.0614 28 6 3.9832 3.0019 0.0001 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 4.3253 0.0171 -0.8828 35 1 4.3487 0.0414 0.9026 36 1 6.4786 0.8833 -0.6775 37 1 6.1727 1.4990 0.9797 38 1 7.9898 2.9737 -0.9427 39 1 9.7308 4.5752 -1.8939 40 1 11.2740 6.3919 -1.2855 41 1 12.1002 9.7100 1.9829 42 1 9.0849 7.0405 2.3307 43 1 7.5357 5.2305 1.7177 44 1 4.0685 3.3812 1.0183 45 1 3.4055 3.6915 -0.6154 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649725438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:42 Heat of formation + Delta-G solvation = -75.808378 kcal Electronic energy + Delta-G solvation = -27199.126871 eV Core-core repulsion = 23182.123229 eV Total energy + Delta-G solvation = -4017.003643 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.90415 -39.94523 -38.88930 -37.62122 -36.54266 -34.18217 -33.32026 -32.31151 -31.92903 -30.33517 -29.64678 -28.04772 -25.75515 -24.95295 -23.31435 -22.90797 -22.25621 -21.26820 -20.04605 -19.53701 -18.45416 -17.92069 -17.59990 -17.29105 -16.37415 -16.20810 -15.76310 -15.40400 -14.99819 -14.75761 -14.25751 -14.04190 -13.87842 -13.86902 -13.71471 -13.60218 -13.29401 -13.17061 -12.78408 -12.65237 -12.60652 -12.38485 -12.06490 -11.97057 -11.71083 -11.65131 -11.60189 -11.37061 -11.16307 -10.88350 -10.42722 -10.33496 -10.18977 -9.84029 -9.71777 -9.33254 -9.04845 -8.69769 -8.32315 -7.06788 -6.79744 -4.08394 1.94296 2.09062 2.28890 2.48524 2.66166 3.18319 3.21591 3.28320 3.41384 3.82930 3.96643 4.09157 4.28156 4.36649 4.47211 4.62887 4.64644 4.72911 4.79046 4.85981 4.98684 5.06132 5.12354 5.17903 5.22059 5.37201 5.41784 5.44220 5.53034 5.54650 5.66183 5.67799 5.79731 5.88291 6.01690 6.09968 6.15979 6.69427 6.72147 6.86406 7.04680 7.09593 7.18096 7.47628 7.58168 7.63462 7.80849 8.19808 8.37153 8.88868 9.57554 10.64248 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.041593 B = 0.001812 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.024184 B =15452.932906 C =15723.851282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.525 3.475 4 O -0.536 6.536 5 N -0.624 5.624 6 C 0.102 3.898 7 C -0.124 4.124 8 C -0.123 4.123 9 H 0.113 0.887 10 C 0.517 3.483 11 O -0.520 6.520 12 N -0.656 5.656 13 C 0.033 3.967 14 C -0.088 4.088 15 C -0.216 4.216 16 C 0.151 3.849 17 O -0.200 6.200 18 C -0.473 4.473 19 H 0.084 0.916 20 C 0.010 3.990 21 N -0.880 5.880 22 Si 1.099 2.901 23 H -0.281 1.281 24 H -0.275 1.275 25 H -0.283 1.283 26 C -0.182 4.182 27 C -0.066 4.066 28 C 0.126 3.874 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.402 0.598 39 H 0.112 0.888 40 H 0.133 0.867 41 H 0.283 0.717 42 H 0.119 0.881 43 H 0.130 0.870 44 H 0.084 0.916 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.192 -24.410 -5.709 29.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.178 4.178 3 C 0.315 3.685 4 O -0.413 6.413 5 N -0.359 5.359 6 C -0.021 4.021 7 C -0.162 4.162 8 C -0.145 4.145 9 H 0.131 0.869 10 C 0.303 3.697 11 O -0.396 6.396 12 N -0.300 5.300 13 C -0.059 4.059 14 C -0.108 4.108 15 C -0.236 4.236 16 C 0.097 3.903 17 O -0.104 6.104 18 C -0.548 4.548 19 H 0.102 0.898 20 C -0.196 4.196 21 N -0.511 5.511 22 Si 0.923 3.077 23 H -0.207 1.207 24 H -0.200 1.200 25 H -0.208 1.208 26 C -0.202 4.202 27 C -0.086 4.086 28 C 0.003 3.997 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.237 0.763 39 H 0.130 0.870 40 H 0.150 0.850 41 H 0.093 0.907 42 H 0.137 0.863 43 H 0.147 0.853 44 H 0.102 0.898 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.772 -21.985 -5.343 27.020 hybrid contribution -0.872 -1.667 -0.154 1.888 sum -15.644 -23.652 -5.497 28.886 Atomic orbital electron populations 1.21547 0.92880 1.01659 1.03507 1.21616 0.98638 0.93348 1.04241 1.20512 0.80151 0.92058 0.75813 1.90737 1.54201 1.46783 1.49549 1.48566 1.05275 1.08024 1.74053 1.22050 0.86422 0.91364 1.02272 1.22700 0.96831 0.93671 1.03047 1.22466 0.94951 0.94557 1.02568 0.86859 1.20150 0.82412 0.86665 0.80469 1.90746 1.77450 1.33652 1.37736 1.43159 1.07109 1.21185 1.58583 1.17249 0.95501 0.96429 0.96764 1.20498 0.95279 0.97622 0.97432 1.20992 1.03266 0.99722 0.99629 1.19276 0.89458 0.88901 0.92670 1.83676 1.39256 1.45176 1.42321 1.22235 1.13687 1.17305 1.01611 0.89809 1.26549 0.99936 0.91666 1.01429 1.70543 1.33875 1.38804 1.07927 0.83047 0.74249 0.77231 0.73145 1.20694 1.20030 1.20830 1.20141 0.96343 1.02146 1.01561 1.20725 0.98003 0.95242 0.94614 1.21995 0.90498 0.84633 1.02564 0.91896 0.91924 0.91972 0.88959 0.88943 0.90802 0.90777 0.88831 0.89537 0.76332 0.87036 0.84963 0.90691 0.86261 0.85259 0.89773 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.20 37.16 0.34 -0.54 16 2 C -0.14 -0.80 5.61 -27.89 -0.16 -0.95 16 3 C 0.53 5.24 7.85 -10.99 -0.09 5.15 16 4 O -0.54 -7.74 16.24 5.55 0.09 -7.65 16 5 N -0.62 -5.33 3.33 -170.53 -0.57 -5.90 16 6 C 0.10 0.48 6.49 -3.07 -0.02 0.46 16 7 C -0.12 -0.62 6.32 -24.90 -0.16 -0.78 16 8 C -0.12 -1.00 3.44 -89.62 -0.31 -1.31 16 9 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 10 C 0.52 6.44 7.00 -10.99 -0.08 6.37 16 11 O -0.52 -8.87 13.24 5.54 0.07 -8.79 16 12 N -0.66 -7.90 5.30 -9.82 -0.05 -7.95 16 13 C 0.03 0.55 6.30 -83.63 -0.53 0.02 16 14 C -0.09 -1.52 9.96 -39.41 -0.39 -1.92 16 15 C -0.22 -4.58 9.16 -39.42 -0.36 -4.94 16 16 C 0.15 3.62 6.65 -39.08 -0.26 3.36 16 17 O -0.20 -5.62 9.16 0.01 0.00 -5.62 16 18 C -0.47 -13.16 9.48 30.88 0.29 -12.86 16 19 H 0.08 2.17 5.20 -52.48 -0.27 1.90 16 20 C 0.01 0.27 5.49 -17.52 -0.10 0.18 16 21 N -0.88 -26.20 13.70 55.48 0.76 -25.44 16 22 Si 1.10 23.46 29.92 -169.99 -5.09 18.38 16 23 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 25 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 26 C -0.18 -3.93 9.98 -39.42 -0.39 -4.32 16 27 C -0.07 -1.26 8.69 -39.42 -0.34 -1.60 16 28 C 0.13 1.31 5.97 -2.53 -0.02 1.29 16 29 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 30 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.09 0.50 8.03 -51.93 -0.42 0.09 16 38 H 0.40 3.24 8.77 -40.82 -0.36 2.89 16 39 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.13 2.81 5.63 -52.49 -0.30 2.52 16 41 H 0.28 8.64 7.97 -40.82 -0.33 8.31 16 42 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 43 H 0.13 2.40 6.23 -52.48 -0.33 2.08 16 44 H 0.08 1.03 7.51 -51.93 -0.39 0.64 16 45 H 0.09 1.02 8.04 -51.93 -0.42 0.61 16 LS Contribution 376.47 15.07 5.67 5.67 Total: -1.00 -35.96 376.47 -7.91 -43.87 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.24 Total: 5.84 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -2.56 Total: -12.40 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.14 Total: -39.30 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: 0.16 Total: -22.07 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -5.09 Total: 18.38 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.96 -7.91 -43.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649725438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.939 kcal (2) G-P(sol) polarization free energy of solvation -35.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds