Wall clock time and date at job start Tue Mar 31 2020 16:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47216 * 2 1 4 4 O 1.21285 * 119.99735 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00487 * 179.97438 * 3 2 1 6 6 C 1.47023 * 125.64638 * 0.03586 * 5 3 2 7 7 C 1.54317 * 107.27333 * 178.89273 * 6 5 3 8 8 C 1.55164 * 102.94069 * 337.80071 * 7 6 5 9 9 H 1.08997 * 111.00493 * 277.39260 * 8 7 6 10 10 C 1.50701 * 111.00113 * 153.57984 * 8 7 6 11 11 O 1.21297 * 119.99753 * 241.44982 * 10 8 7 12 12 N 1.34771 * 120.00280 * 61.45533 * 10 8 7 13 13 C 1.39993 * 120.00240 * 175.48906 * 12 10 8 14 14 C 1.38914 * 120.00474 * 215.12360 * 13 12 10 15 15 C 1.38010 * 120.00040 * 180.02562 * 14 13 12 16 16 C 1.38911 * 119.99690 * 359.97093 * 15 14 13 17 17 O 1.35782 * 119.99330 * 180.02562 * 16 15 14 18 18 C 1.34808 * 117.00227 * 5.35132 * 17 16 15 19 19 H 1.08007 * 119.99966 * 354.95779 * 18 17 16 20 20 C 1.38631 * 120.00265 * 174.95845 * 18 17 16 21 21 N 1.31570 * 119.99675 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00145 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47288 * 270.00006 * 22 20 18 24 24 H 1.48498 * 109.46911 * 150.00221 * 22 20 18 25 25 H 1.48499 * 109.46947 * 30.00447 * 22 20 18 26 26 C 1.38908 * 120.00414 * 0.30125 * 16 15 14 27 27 C 1.38000 * 119.99899 * 359.44960 * 26 16 15 28 28 C 1.47424 * 125.65259 * 179.97438 * 5 3 2 29 29 H 1.08995 * 109.46963 * 299.99412 * 1 2 3 30 30 H 1.09000 * 109.47393 * 59.99417 * 1 2 3 31 31 H 1.08998 * 109.47233 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47163 * 240.00686 * 2 1 3 33 33 H 1.09000 * 109.47393 * 120.00582 * 2 1 3 34 34 H 1.08998 * 109.88294 * 59.46559 * 6 5 3 35 35 H 1.09003 * 109.87725 * 298.30466 * 6 5 3 36 36 H 1.08999 * 110.72114 * 219.43828 * 7 6 5 37 37 H 1.08999 * 110.72158 * 96.16648 * 7 6 5 38 38 H 0.97008 * 119.99984 * 355.49480 * 12 10 8 39 39 H 1.08002 * 120.00259 * 0.02562 * 14 13 12 40 40 H 1.08000 * 119.99961 * 180.02562 * 15 14 13 41 41 H 0.97004 * 120.00696 * 0.02562 * 21 20 18 42 42 H 1.08002 * 119.99771 * 179.69742 * 26 16 15 43 43 H 1.08009 * 119.99914 * 180.27307 * 27 26 16 44 44 H 1.08996 * 110.36530 * 85.33680 * 28 5 3 45 45 H 1.09003 * 110.36505 * 323.01403 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.4182 0.6491 0.0004 7 6 5.7689 1.3949 -0.0273 8 6 5.3887 2.7807 -0.6125 9 1 5.3401 2.7453 -1.7008 10 6 6.3522 3.8441 -0.1520 11 8 5.9521 4.7807 0.5068 12 7 7.6582 3.7546 -0.4723 13 6 8.5363 4.7886 -0.1264 14 6 9.5895 5.1172 -0.9704 15 6 10.4554 6.1362 -0.6290 16 6 10.2733 6.8336 0.5584 17 8 11.1249 7.8365 0.8939 18 6 12.0571 8.1786 -0.0178 19 1 12.1549 7.6089 -0.9301 20 6 12.8904 9.2617 0.2156 21 7 12.7710 9.9561 1.3268 22 14 14.1826 9.7353 -1.0474 23 1 15.4480 9.0156 -0.7548 24 1 14.4207 11.1998 -0.9867 25 1 13.7062 9.3672 -2.4049 26 6 9.2235 6.5014 1.4052 27 6 8.3546 5.4859 1.0614 28 6 3.9832 3.0019 0.0001 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 4.3253 0.0171 -0.8828 35 1 4.3487 0.0414 0.9026 36 1 6.4786 0.8833 -0.6775 37 1 6.1727 1.4990 0.9797 38 1 7.9898 2.9737 -0.9427 39 1 9.7308 4.5752 -1.8939 40 1 11.2740 6.3919 -1.2855 41 1 12.1002 9.7100 1.9829 42 1 9.0849 7.0405 2.3307 43 1 7.5357 5.2305 1.7177 44 1 4.0685 3.3812 1.0183 45 1 3.4055 3.6915 -0.6154 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649725438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:41 Heat of formation + Delta-G solvation = -101.571568 kcal Electronic energy + Delta-G solvation = -27200.244047 eV Core-core repulsion = 23182.123229 eV Total energy + Delta-G solvation = -4018.120818 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.88346 -41.02959 -40.41053 -38.67587 -37.91695 -35.55675 -34.19661 -33.90707 -32.72064 -31.95962 -30.26274 -29.50454 -27.07129 -26.36653 -24.25817 -23.83475 -23.47313 -22.64888 -21.16231 -20.31872 -20.09002 -19.02591 -18.71861 -18.24869 -17.92024 -17.10339 -16.84660 -16.46440 -16.14564 -15.81109 -15.70313 -15.55236 -15.39303 -14.92817 -14.84790 -14.54970 -14.50373 -14.16112 -13.88613 -13.57025 -13.50748 -13.33822 -13.13264 -12.95609 -12.85663 -12.59570 -12.52377 -12.33926 -12.21891 -12.07244 -11.91173 -11.83974 -11.44967 -11.15779 -10.97455 -10.83422 -10.55878 -9.93112 -9.73521 -8.93574 -8.71359 -6.23011 0.42145 0.45954 1.50273 1.51838 1.57706 1.64946 1.74339 1.78832 2.22260 2.37350 2.80116 3.10736 3.17445 3.33209 3.40681 3.72810 3.75634 3.98310 4.05341 4.11575 4.19050 4.22392 4.24792 4.30638 4.41626 4.54546 4.57827 4.68358 4.70815 4.78095 4.84374 4.94538 4.99361 5.04365 5.05710 5.10957 5.12389 5.22397 5.27288 5.36013 5.40916 5.48302 5.67140 6.01195 6.25479 6.44165 6.49726 6.87231 7.10463 7.16800 7.63260 8.51365 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.041593 B = 0.001812 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.024184 B =15452.932906 C =15723.851282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.128 4.128 3 C 0.513 3.487 4 O -0.597 6.597 5 N -0.622 5.622 6 C 0.096 3.904 7 C -0.117 4.117 8 C -0.106 4.106 9 H 0.144 0.856 10 C 0.518 3.482 11 O -0.570 6.570 12 N -0.640 5.640 13 C 0.066 3.934 14 C -0.076 4.076 15 C -0.219 4.219 16 C 0.109 3.891 17 O -0.253 6.253 18 C -0.486 4.486 19 H 0.098 0.902 20 C -0.047 4.047 21 N -0.920 5.920 22 Si 1.149 2.851 23 H -0.262 1.262 24 H -0.277 1.277 25 H -0.256 1.256 26 C -0.193 4.193 27 C -0.074 4.074 28 C 0.121 3.879 29 H 0.040 0.960 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.136 0.864 37 H 0.077 0.923 38 H 0.430 0.570 39 H 0.164 0.836 40 H 0.131 0.869 41 H 0.259 0.741 42 H 0.110 0.890 43 H 0.134 0.866 44 H 0.055 0.945 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.210 -29.643 -8.920 34.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.167 4.167 3 C 0.305 3.695 4 O -0.478 6.478 5 N -0.355 5.355 6 C -0.025 4.025 7 C -0.154 4.154 8 C -0.128 4.128 9 H 0.161 0.839 10 C 0.307 3.693 11 O -0.448 6.448 12 N -0.287 5.287 13 C -0.028 4.028 14 C -0.096 4.096 15 C -0.238 4.238 16 C 0.059 3.941 17 O -0.161 6.161 18 C -0.562 4.562 19 H 0.115 0.885 20 C -0.243 4.243 21 N -0.554 5.554 22 Si 0.964 3.036 23 H -0.187 1.187 24 H -0.202 1.202 25 H -0.180 1.180 26 C -0.213 4.213 27 C -0.094 4.094 28 C -0.003 4.003 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.126 0.874 35 H 0.110 0.890 36 H 0.154 0.846 37 H 0.096 0.904 38 H 0.269 0.731 39 H 0.182 0.818 40 H 0.149 0.851 41 H 0.067 0.933 42 H 0.128 0.872 43 H 0.151 0.849 44 H 0.073 0.927 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.804 -27.356 -8.584 32.267 hybrid contribution -1.221 -0.340 0.855 1.529 sum -16.025 -27.696 -7.729 32.918 Atomic orbital electron populations 1.21565 0.93833 1.02744 1.01621 1.21679 0.97724 0.90476 1.06842 1.21445 0.80117 0.93345 0.74632 1.90710 1.55843 1.48858 1.52378 1.48679 1.05818 1.08083 1.72967 1.22410 0.84546 0.90622 1.04885 1.22825 0.97958 0.91360 1.03303 1.22381 0.91718 0.94741 1.03969 0.83875 1.20963 0.82704 0.86732 0.78941 1.90752 1.78272 1.35947 1.39855 1.43055 1.06390 1.20874 1.58414 1.17373 0.94883 0.95665 0.94857 1.20887 0.93637 0.96185 0.98862 1.21165 1.03959 1.00348 0.98363 1.19776 0.90233 0.89325 0.94785 1.83660 1.41088 1.47738 1.43586 1.22662 1.13806 1.17613 1.02121 0.88499 1.28443 1.01914 0.91493 1.02442 1.70687 1.34809 1.40683 1.09268 0.82531 0.72297 0.76932 0.71790 1.18739 1.20242 1.17984 1.20280 0.96618 1.03042 1.01338 1.20863 0.97478 0.95059 0.95984 1.21810 0.92118 0.85712 1.00636 0.94057 0.93692 0.89231 0.85781 0.86409 0.87352 0.88974 0.84635 0.90395 0.73081 0.81839 0.85140 0.93262 0.87179 0.84878 0.92692 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.20 71.98 0.66 -0.91 16 2 C -0.13 -1.05 5.61 29.85 0.17 -0.88 16 3 C 0.51 9.57 7.85 87.66 0.69 10.26 16 4 O -0.60 -17.91 16.24 -3.05 -0.05 -17.96 16 5 N -0.62 -9.14 3.33 -811.81 -2.70 -11.84 16 6 C 0.10 0.39 6.49 86.73 0.56 0.95 16 7 C -0.12 -0.51 6.32 31.78 0.20 -0.31 16 8 C -0.11 -1.32 3.44 -10.15 -0.03 -1.36 16 9 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 10 C 0.52 11.41 7.00 87.66 0.61 12.02 16 11 O -0.57 -19.10 13.24 -3.08 -0.04 -19.14 16 12 N -0.64 -12.48 5.30 -303.38 -1.61 -14.09 16 13 C 0.07 2.01 6.30 38.16 0.24 2.25 16 14 C -0.08 -2.34 9.96 22.38 0.22 -2.11 16 15 C -0.22 -9.07 9.16 22.38 0.20 -8.87 16 16 C 0.11 5.43 6.65 22.59 0.15 5.58 16 17 O -0.25 -15.14 9.16 -22.86 -0.21 -15.35 16 18 C -0.49 -28.19 9.48 67.91 0.64 -27.54 16 19 H 0.10 5.11 5.20 -2.91 -0.02 5.09 16 20 C -0.05 -2.71 5.49 84.83 0.47 -2.24 16 21 N -0.92 -58.10 13.70 21.61 0.30 -57.81 16 22 Si 1.15 47.62 29.92 68.60 2.05 49.67 16 23 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 24 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 25 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 26 C -0.19 -8.68 9.98 22.37 0.22 -8.45 16 27 C -0.07 -2.79 8.69 22.38 0.19 -2.59 16 28 C 0.12 2.43 5.97 86.85 0.52 2.95 16 29 H 0.04 0.63 8.10 -2.39 -0.02 0.61 16 30 H 0.04 0.65 8.10 -2.39 -0.02 0.64 16 31 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.12 0.28 8.14 -2.38 -0.02 0.26 16 33 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 35 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 36 H 0.14 -0.42 8.14 -2.39 -0.02 -0.44 16 37 H 0.08 0.54 8.03 -2.39 -0.02 0.52 16 38 H 0.43 4.06 8.77 -92.70 -0.81 3.25 16 39 H 0.16 3.41 8.06 -2.91 -0.02 3.38 16 40 H 0.13 5.42 5.63 -2.91 -0.02 5.41 16 41 H 0.26 17.16 7.97 -92.71 -0.74 16.42 16 42 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 43 H 0.13 4.96 6.23 -2.91 -0.02 4.94 16 44 H 0.05 1.41 7.51 -2.39 -0.02 1.39 16 45 H 0.06 1.47 8.04 -2.39 -0.02 1.45 16 Total: -1.00 -90.42 376.47 3.71 -86.71 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.24 Total: 21.06 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: 5.73 Total: -21.25 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -4.01 Total: -83.74 kcal Atomic # 8 Polarization: -52.15 SS G_CDS: -0.30 Total: -52.45 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.05 Total: 49.67 kcal Total: -90.42 3.71 -86.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649725438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.863 kcal (2) G-P(sol) polarization free energy of solvation -90.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds