Wall clock time and date at job start Tue Mar 31 2020 17:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.70272 * 2 1 4 4 O 1.43175 * 109.74282 * 239.39620 * 2 1 3 5 5 C 1.36101 * 116.72129 * 194.15546 * 4 2 1 6 6 C 1.38702 * 119.40087 * 197.05154 * 5 4 2 7 7 C 1.38199 * 120.06688 * 180.13677 * 6 5 4 8 8 C 1.38255 * 120.11499 * 0.02957 * 7 6 5 9 9 C 1.38194 * 120.11009 * 359.92216 * 8 7 6 10 10 C 1.38694 * 120.06884 * 0.02562 * 9 8 7 11 11 O 1.36111 * 119.39003 * 180.16866 * 10 9 8 12 12 C 1.43181 * 116.68816 * 197.18973 * 11 10 9 13 13 H 1.08999 * 109.74550 * 194.02389 * 12 11 10 14 14 C 1.50692 * 109.71162 * 73.41313 * 12 11 10 15 15 O 1.21279 * 120.00318 * 356.51071 * 14 12 11 16 16 N 1.34784 * 119.99995 * 176.50976 * 14 12 11 17 17 C 1.46495 * 119.99847 * 175.48834 * 16 14 12 18 18 C 1.50701 * 109.46826 * 179.97438 * 17 16 14 19 19 C 1.31001 * 119.99853 * 122.44451 * 18 17 16 20 20 C 1.50702 * 120.00289 * 7.45703 * 19 18 17 21 21 N 1.46499 * 109.47229 * 122.88398 * 20 19 18 22 22 C 1.36933 * 120.00070 * 180.02562 * 21 20 19 23 23 H 1.07996 * 119.99969 * 359.97438 * 22 21 20 24 24 C 1.38814 * 120.00095 * 180.02562 * 22 21 20 25 25 N 1.31622 * 119.99755 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00010 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47212 * 59.99908 * 26 24 22 28 28 H 1.48506 * 109.47081 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47443 * 299.99497 * 26 24 22 30 30 H 1.09006 * 109.47061 * 292.80075 * 1 2 3 31 31 H 1.08997 * 109.47779 * 52.79767 * 1 2 3 32 32 H 1.09004 * 109.46861 * 172.80383 * 1 2 3 33 33 H 1.08000 * 119.96609 * 0.16196 * 6 5 4 34 34 H 1.08001 * 119.93921 * 180.02562 * 7 6 5 35 35 H 1.08000 * 119.94061 * 179.97438 * 8 7 6 36 36 H 1.08010 * 119.96072 * 179.97438 * 9 8 7 37 37 H 0.97000 * 119.99571 * 355.49288 * 16 14 12 38 38 H 1.09001 * 109.47370 * 60.00554 * 17 16 14 39 39 H 1.09001 * 109.47696 * 300.00085 * 17 16 14 40 40 H 1.07998 * 120.00407 * 302.44096 * 18 17 16 41 41 H 1.08001 * 120.00119 * 187.18968 * 19 18 17 42 42 H 1.08993 * 109.47674 * 242.88868 * 20 19 18 43 43 H 1.09008 * 109.46806 * 2.88925 * 20 19 18 44 44 H 0.96999 * 119.99669 * 359.97438 * 21 20 19 45 45 H 0.97002 * 119.99856 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 8 2.0136 -0.6861 -1.1599 5 6 3.3298 -1.0325 -1.1616 6 6 3.9443 -1.3669 -2.3592 7 6 5.2794 -1.7235 -2.3765 8 6 6.0059 -1.7486 -1.2005 9 6 5.4000 -1.4155 -0.0040 10 6 4.0608 -1.0557 0.0202 11 8 3.4788 -0.7269 1.2059 12 6 2.0475 -0.7357 1.2440 13 1 1.6999 -0.2267 2.1430 14 6 1.5476 -2.1573 1.2395 15 8 2.3333 -3.0761 1.1430 16 7 0.2273 -2.4077 1.3427 17 6 -0.2678 -3.7826 1.2391 18 6 -1.7674 -3.7890 1.3878 19 6 -2.5176 -4.2914 0.4386 20 6 -1.8820 -5.0126 -0.7220 21 7 -2.4234 -6.3712 -0.8083 22 6 -1.9906 -7.2194 -1.7923 23 1 -1.2505 -6.8868 -2.5050 24 6 -2.5039 -8.5065 -1.8745 25 7 -3.4063 -8.9118 -1.0062 26 14 -1.9141 -9.6634 -3.2172 27 1 -0.4494 -9.8691 -3.0852 28 1 -2.6105 -10.9686 -3.0873 29 1 -2.2131 -9.0725 -4.5464 30 1 -0.3633 0.3983 0.9474 31 1 -0.3634 0.6213 -0.8185 32 1 -0.3633 -1.0196 -0.1287 33 1 3.3790 -1.3482 -3.2793 34 1 5.7559 -1.9831 -3.3102 35 1 7.0490 -2.0281 -1.2172 36 1 5.9698 -1.4363 0.9134 37 1 -0.3951 -1.6775 1.4855 38 1 0.1777 -4.3895 2.0273 39 1 0.0031 -4.1941 0.2667 40 1 -2.2237 -3.3795 2.2769 41 1 -3.5918 -4.1926 0.4900 42 1 -2.0982 -4.4760 -1.6457 43 1 -0.8032 -5.0602 -0.5733 44 1 -3.0878 -6.6701 -0.1680 45 1 -3.7648 -9.8113 -1.0634 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669183474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:18 Heat of formation + Delta-G solvation = -29.449649 kcal Electronic energy + Delta-G solvation = -28522.985925 eV Core-core repulsion = 24507.992548 eV Total energy + Delta-G solvation = -4014.993377 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.96401 -39.51655 -37.83488 -37.54059 -36.53027 -34.79129 -33.56696 -32.43519 -30.86906 -30.41248 -29.28723 -28.09455 -26.37916 -24.91716 -23.89541 -22.86791 -22.50417 -21.95793 -20.38192 -19.13797 -18.78886 -18.00880 -17.26262 -16.96630 -16.67114 -16.11892 -15.93063 -15.28685 -15.15512 -14.91859 -14.67558 -14.41779 -14.23374 -13.99466 -13.83271 -13.56653 -13.33038 -13.22977 -13.02726 -12.91302 -12.65445 -12.35830 -12.09490 -12.02812 -11.75949 -11.73264 -11.31737 -10.97110 -10.77896 -10.64273 -10.45038 -10.06852 -10.05796 -9.78390 -9.22117 -9.04129 -8.77291 -8.64527 -8.19972 -6.92667 -5.76973 -3.06326 1.16313 1.18305 2.13747 2.30556 2.66094 2.91046 3.16337 3.46101 3.49940 3.51603 3.61140 3.74452 4.27171 4.34387 4.39382 4.61810 4.62950 4.66886 4.86418 4.96688 4.97603 5.13702 5.22716 5.24083 5.25075 5.30566 5.55519 5.60516 5.63962 5.71598 5.83868 5.95434 5.99218 6.02869 6.19003 6.25452 6.33155 6.46370 6.48940 6.54043 6.65937 6.84268 7.11456 7.17292 7.32406 7.70041 8.00735 8.41428 9.52841 10.08043 10.43528 11.45728 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012187 B = 0.002945 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.965494 B = 9506.423078 C =10883.084537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.063 3.937 3 H 0.096 0.904 4 O -0.299 6.299 5 C 0.056 3.944 6 C -0.114 4.114 7 C -0.116 4.116 8 C -0.118 4.118 9 C -0.108 4.108 10 C 0.061 3.939 11 O -0.280 6.280 12 C 0.035 3.965 13 H 0.151 0.849 14 C 0.492 3.508 15 O -0.510 6.510 16 N -0.718 5.718 17 C 0.136 3.864 18 C -0.200 4.200 19 C -0.105 4.105 20 C 0.160 3.840 21 N -0.727 5.727 22 C -0.242 4.242 23 H 0.071 0.929 24 C -0.012 4.012 25 N -0.934 5.934 26 Si 0.909 3.091 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.285 1.285 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.400 0.600 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.028 0.972 43 H 0.036 0.964 44 H 0.385 0.615 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.104 24.649 4.852 27.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.006 3.994 3 H 0.114 0.886 4 O -0.213 6.213 5 C 0.011 3.989 6 C -0.132 4.132 7 C -0.134 4.134 8 C -0.136 4.136 9 C -0.127 4.127 10 C 0.016 3.984 11 O -0.193 6.193 12 C -0.026 4.026 13 H 0.168 0.832 14 C 0.275 3.725 15 O -0.385 6.385 16 N -0.374 5.374 17 C 0.015 3.985 18 C -0.220 4.220 19 C -0.125 4.125 20 C 0.034 3.966 21 N -0.371 5.371 22 C -0.373 4.373 23 H 0.089 0.911 24 C -0.208 4.208 25 N -0.582 5.582 26 Si 0.740 3.260 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.212 1.212 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.237 0.763 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.046 0.954 43 H 0.053 0.947 44 H 0.218 0.782 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.724 23.898 4.656 27.472 hybrid contribution -0.519 -0.487 -0.160 0.729 sum 12.206 23.412 4.496 26.782 Atomic orbital electron populations 1.22196 0.90670 1.05675 1.04061 1.23059 0.97274 0.95570 0.83533 0.88649 1.86354 1.21895 1.73053 1.40039 1.18888 0.83877 1.02500 0.93625 1.20451 0.94770 1.02290 0.95703 1.20913 0.93197 1.00589 0.98718 1.20902 1.00246 1.00790 0.91637 1.20400 0.92093 1.00847 0.99359 1.18819 0.93772 1.02194 0.83603 1.86386 1.18117 1.83985 1.30826 1.23282 0.81699 0.95346 1.02305 0.83184 1.20713 0.83128 0.90981 0.77649 1.90788 1.54907 1.45365 1.47390 1.46351 1.06836 1.10557 1.73606 1.20659 0.91983 0.81858 1.04012 1.22575 0.93889 1.06334 0.99178 1.23325 0.99910 0.94049 0.95176 1.20041 0.96144 0.86945 0.93514 1.42243 1.50071 1.08302 1.36486 1.19203 1.18771 0.93210 1.06138 0.91123 1.24752 0.99343 0.97508 0.99231 1.69657 1.32203 1.18584 1.37750 0.86236 0.78130 0.80233 0.81428 1.21134 1.21617 1.21177 0.89551 0.89876 0.89260 0.84795 0.85072 0.85110 0.84923 0.76309 0.90969 0.88935 0.86988 0.86827 0.95418 0.94662 0.78162 0.93411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 8.11 37.16 0.30 -0.76 16 2 C 0.06 0.56 3.34 -26.47 -0.09 0.47 16 3 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 4 O -0.30 -3.84 9.71 -32.84 -0.32 -4.16 16 5 C 0.06 0.76 6.30 -39.13 -0.25 0.52 16 6 C -0.11 -1.38 9.96 -39.42 -0.39 -1.78 16 7 C -0.12 -1.21 10.04 -39.59 -0.40 -1.61 16 8 C -0.12 -1.21 10.04 -39.59 -0.40 -1.61 16 9 C -0.11 -1.30 9.96 -39.43 -0.39 -1.69 16 10 C 0.06 0.83 5.47 -39.14 -0.21 0.61 16 11 O -0.28 -3.60 9.90 -47.06 -0.47 -4.07 16 12 C 0.03 0.35 3.40 -27.62 -0.09 0.26 16 13 H 0.15 0.88 8.14 -51.93 -0.42 0.46 16 14 C 0.49 6.68 6.40 -10.99 -0.07 6.61 16 15 O -0.51 -9.50 15.76 -14.17 -0.22 -9.72 16 16 N -0.72 -8.13 4.13 -61.48 -0.25 -8.38 16 17 C 0.14 1.96 5.88 -5.20 -0.03 1.93 16 18 C -0.20 -2.63 9.63 -36.03 -0.35 -2.98 16 19 C -0.11 -1.66 9.63 -36.03 -0.35 -2.01 16 20 C 0.16 3.27 6.46 -5.19 -0.03 3.23 16 21 N -0.73 -18.82 5.59 -61.09 -0.34 -19.16 16 22 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 23 H 0.07 1.98 7.83 -52.49 -0.41 1.56 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -28.61 13.06 55.49 0.72 -27.89 16 26 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 27 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 30 H 0.09 0.25 7.95 -51.93 -0.41 -0.16 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.74 5.67 -51.93 -0.29 0.45 16 33 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 37 H 0.40 3.07 5.97 -40.82 -0.24 2.83 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.09 1.60 5.09 -51.93 -0.26 1.33 16 40 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.04 0.75 5.09 -51.92 -0.26 0.48 16 44 H 0.38 10.39 7.66 -40.82 -0.31 10.08 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 371.78 15.07 5.60 5.60 Total: -1.00 -36.69 371.78 -9.29 -45.98 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -5.99 Total: 10.35 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -3.00 Total: -6.37 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 0.13 Total: -55.44 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -1.01 Total: -17.95 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.69 -9.29 -45.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669183474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.528 kcal (2) G-P(sol) polarization free energy of solvation -36.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds