Wall clock time and date at job start Tue Mar 31 2020 17:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.70272 * 2 1 4 4 O 1.43175 * 109.74282 * 239.39620 * 2 1 3 5 5 C 1.36101 * 116.72129 * 194.15546 * 4 2 1 6 6 C 1.38702 * 119.40087 * 197.05154 * 5 4 2 7 7 C 1.38199 * 120.06688 * 180.13677 * 6 5 4 8 8 C 1.38255 * 120.11499 * 0.02957 * 7 6 5 9 9 C 1.38194 * 120.11009 * 359.92216 * 8 7 6 10 10 C 1.38694 * 120.06884 * 0.02562 * 9 8 7 11 11 O 1.36111 * 119.39003 * 180.16866 * 10 9 8 12 12 C 1.43181 * 116.68816 * 197.18973 * 11 10 9 13 13 H 1.08999 * 109.74550 * 194.02389 * 12 11 10 14 14 C 1.50692 * 109.71162 * 73.41313 * 12 11 10 15 15 O 1.21279 * 120.00318 * 356.51071 * 14 12 11 16 16 N 1.34784 * 119.99995 * 176.50976 * 14 12 11 17 17 C 1.46495 * 119.99847 * 175.48834 * 16 14 12 18 18 C 1.50701 * 109.46826 * 179.97438 * 17 16 14 19 19 C 1.31001 * 119.99853 * 122.44451 * 18 17 16 20 20 C 1.50702 * 120.00289 * 7.45703 * 19 18 17 21 21 N 1.46499 * 109.47229 * 122.88398 * 20 19 18 22 22 C 1.36933 * 120.00070 * 180.02562 * 21 20 19 23 23 H 1.07996 * 119.99969 * 359.97438 * 22 21 20 24 24 C 1.38814 * 120.00095 * 180.02562 * 22 21 20 25 25 N 1.31622 * 119.99755 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00010 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47212 * 59.99908 * 26 24 22 28 28 H 1.48506 * 109.47081 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47443 * 299.99497 * 26 24 22 30 30 H 1.09006 * 109.47061 * 292.80075 * 1 2 3 31 31 H 1.08997 * 109.47779 * 52.79767 * 1 2 3 32 32 H 1.09004 * 109.46861 * 172.80383 * 1 2 3 33 33 H 1.08000 * 119.96609 * 0.16196 * 6 5 4 34 34 H 1.08001 * 119.93921 * 180.02562 * 7 6 5 35 35 H 1.08000 * 119.94061 * 179.97438 * 8 7 6 36 36 H 1.08010 * 119.96072 * 179.97438 * 9 8 7 37 37 H 0.97000 * 119.99571 * 355.49288 * 16 14 12 38 38 H 1.09001 * 109.47370 * 60.00554 * 17 16 14 39 39 H 1.09001 * 109.47696 * 300.00085 * 17 16 14 40 40 H 1.07998 * 120.00407 * 302.44096 * 18 17 16 41 41 H 1.08001 * 120.00119 * 187.18968 * 19 18 17 42 42 H 1.08993 * 109.47674 * 242.88868 * 20 19 18 43 43 H 1.09008 * 109.46806 * 2.88925 * 20 19 18 44 44 H 0.96999 * 119.99669 * 359.97438 * 21 20 19 45 45 H 0.97002 * 119.99856 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 8 2.0136 -0.6861 -1.1599 5 6 3.3298 -1.0325 -1.1616 6 6 3.9443 -1.3669 -2.3592 7 6 5.2794 -1.7235 -2.3765 8 6 6.0059 -1.7486 -1.2005 9 6 5.4000 -1.4155 -0.0040 10 6 4.0608 -1.0557 0.0202 11 8 3.4788 -0.7269 1.2059 12 6 2.0475 -0.7357 1.2440 13 1 1.6999 -0.2267 2.1430 14 6 1.5476 -2.1573 1.2395 15 8 2.3333 -3.0761 1.1430 16 7 0.2273 -2.4077 1.3427 17 6 -0.2678 -3.7826 1.2391 18 6 -1.7674 -3.7890 1.3878 19 6 -2.5176 -4.2914 0.4386 20 6 -1.8820 -5.0126 -0.7220 21 7 -2.4234 -6.3712 -0.8083 22 6 -1.9906 -7.2194 -1.7923 23 1 -1.2505 -6.8868 -2.5050 24 6 -2.5039 -8.5065 -1.8745 25 7 -3.4063 -8.9118 -1.0062 26 14 -1.9141 -9.6634 -3.2172 27 1 -0.4494 -9.8691 -3.0852 28 1 -2.6105 -10.9686 -3.0873 29 1 -2.2131 -9.0725 -4.5464 30 1 -0.3633 0.3983 0.9474 31 1 -0.3634 0.6213 -0.8185 32 1 -0.3633 -1.0196 -0.1287 33 1 3.3790 -1.3482 -3.2793 34 1 5.7559 -1.9831 -3.3102 35 1 7.0490 -2.0281 -1.2172 36 1 5.9698 -1.4363 0.9134 37 1 -0.3951 -1.6775 1.4855 38 1 0.1777 -4.3895 2.0273 39 1 0.0031 -4.1941 0.2667 40 1 -2.2237 -3.3795 2.2769 41 1 -3.5918 -4.1926 0.4900 42 1 -2.0982 -4.4760 -1.6457 43 1 -0.8032 -5.0602 -0.5733 44 1 -3.0878 -6.6701 -0.1680 45 1 -3.7648 -9.8113 -1.0634 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669183474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:17 Heat of formation + Delta-G solvation = -54.489908 kcal Electronic energy + Delta-G solvation = -28524.071752 eV Core-core repulsion = 24507.992548 eV Total energy + Delta-G solvation = -4016.079204 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.83021 -40.55783 -38.68354 -38.47744 -37.88479 -36.26238 -34.90910 -33.63000 -32.26853 -31.70572 -30.10846 -29.04096 -27.77166 -26.42017 -24.68029 -24.42959 -23.73560 -22.89289 -21.38323 -20.10214 -19.93301 -19.24190 -18.68370 -18.08205 -17.75270 -17.31471 -16.88247 -16.53333 -16.22883 -16.05542 -15.75646 -15.66321 -15.39214 -15.15603 -15.07184 -14.87193 -14.73047 -14.28322 -14.15307 -13.85931 -13.64451 -13.45631 -13.23748 -12.95328 -12.89158 -12.78117 -12.72400 -12.56321 -12.24846 -12.07518 -11.92913 -11.67998 -11.44706 -11.14373 -11.00872 -10.40225 -9.99382 -9.65101 -9.08772 -9.02297 -8.00214 -5.29816 0.27782 0.30804 0.97362 1.29666 1.44440 1.47845 1.54122 1.82125 2.13942 2.18400 2.54042 2.74015 3.00814 3.32842 3.47298 3.54206 3.68524 3.75918 3.98799 4.02458 4.08987 4.11320 4.16128 4.26727 4.28439 4.39897 4.47300 4.53365 4.64924 4.73821 4.82520 4.87880 4.89549 5.03507 5.11299 5.16144 5.22478 5.22732 5.42340 5.48726 5.55017 5.66230 5.82705 5.84057 6.22427 6.27731 6.41500 7.03862 7.28595 8.01790 8.27105 9.22863 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012187 B = 0.002945 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.965494 B = 9506.423078 C =10883.084537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.058 3.942 3 H 0.118 0.882 4 O -0.322 6.322 5 C 0.034 3.966 6 C -0.135 4.135 7 C -0.116 4.116 8 C -0.117 4.117 9 C -0.126 4.126 10 C 0.037 3.963 11 O -0.293 6.293 12 C 0.035 3.965 13 H 0.200 0.800 14 C 0.487 3.513 15 O -0.570 6.570 16 N -0.696 5.696 17 C 0.137 3.863 18 C -0.158 4.158 19 C -0.129 4.129 20 C 0.159 3.841 21 N -0.740 5.740 22 C -0.254 4.254 23 H 0.070 0.930 24 C -0.071 4.071 25 N -0.966 5.966 26 Si 0.974 3.026 27 H -0.281 1.281 28 H -0.290 1.290 29 H -0.275 1.275 30 H 0.129 0.871 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.139 0.861 34 H 0.159 0.841 35 H 0.162 0.838 36 H 0.143 0.857 37 H 0.421 0.579 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.157 0.843 41 H 0.130 0.870 42 H 0.023 0.977 43 H 0.028 0.972 44 H 0.376 0.624 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.192 26.628 5.473 29.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.001 3.999 3 H 0.136 0.864 4 O -0.237 6.237 5 C -0.011 4.011 6 C -0.154 4.154 7 C -0.134 4.134 8 C -0.135 4.135 9 C -0.144 4.144 10 C -0.007 4.007 11 O -0.206 6.206 12 C -0.025 4.025 13 H 0.216 0.784 14 C 0.272 3.728 15 O -0.449 6.449 16 N -0.353 5.353 17 C 0.014 3.986 18 C -0.177 4.177 19 C -0.149 4.149 20 C 0.034 3.966 21 N -0.383 5.383 22 C -0.386 4.386 23 H 0.088 0.912 24 C -0.263 4.263 25 N -0.616 5.616 26 Si 0.802 3.198 27 H -0.207 1.207 28 H -0.215 1.215 29 H -0.201 1.201 30 H 0.148 0.852 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.157 0.843 34 H 0.177 0.823 35 H 0.179 0.821 36 H 0.161 0.839 37 H 0.263 0.737 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.174 0.826 41 H 0.148 0.852 42 H 0.041 0.959 43 H 0.045 0.955 44 H 0.208 0.792 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.792 25.956 5.276 29.414 hybrid contribution -0.476 -1.010 -0.323 1.162 sum 12.316 24.946 4.953 28.258 Atomic orbital electron populations 1.22294 0.88557 1.04676 1.06802 1.23473 0.98829 0.95930 0.81652 0.86419 1.86315 1.21684 1.73655 1.42076 1.19168 0.84397 1.03312 0.94187 1.20783 0.95876 1.02919 0.95793 1.21309 0.92631 0.99413 1.00072 1.21309 1.01655 0.99606 0.90955 1.20768 0.92035 1.01017 1.00593 1.19109 0.94529 1.03162 0.83914 1.86350 1.19558 1.83912 1.30759 1.23661 0.80598 0.93146 1.05087 0.78383 1.21467 0.83043 0.92105 0.76164 1.90759 1.56463 1.47492 1.50145 1.46106 1.06784 1.09932 1.72519 1.20418 0.93087 0.83401 1.01680 1.22780 0.92470 1.03303 0.99107 1.23067 1.00774 0.96335 0.94699 1.20101 0.95878 0.84989 0.95656 1.42435 1.50017 1.10120 1.35690 1.19576 1.18379 0.94017 1.06632 0.91165 1.25578 0.99900 0.99130 1.01723 1.69802 1.33556 1.18769 1.39522 0.85209 0.77580 0.77968 0.79007 1.20700 1.21533 1.20099 0.85227 0.89191 0.91490 0.84286 0.82297 0.82083 0.83925 0.73744 0.92080 0.92437 0.82586 0.85229 0.95887 0.95487 0.79151 0.93745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 8.11 71.98 0.58 -1.02 16 2 C 0.06 0.92 3.34 30.76 0.10 1.03 16 3 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 4 O -0.32 -8.31 9.71 -82.48 -0.80 -9.11 16 5 C 0.03 0.95 6.30 22.56 0.14 1.09 16 6 C -0.14 -3.36 9.96 22.37 0.22 -3.14 16 7 C -0.12 -2.36 10.04 22.26 0.22 -2.13 16 8 C -0.12 -2.32 10.04 22.26 0.22 -2.10 16 9 C -0.13 -3.03 9.96 22.37 0.22 -2.80 16 10 C 0.04 1.03 5.47 22.56 0.12 1.16 16 11 O -0.29 -7.39 9.90 -69.02 -0.68 -8.08 16 12 C 0.03 0.65 3.40 30.02 0.10 0.75 16 13 H 0.20 1.54 8.14 -2.39 -0.02 1.52 16 14 C 0.49 12.98 6.40 87.65 0.56 13.54 16 15 O -0.57 -21.96 15.76 15.83 0.25 -21.71 16 16 N -0.70 -14.72 4.13 -466.79 -1.93 -16.64 16 17 C 0.14 3.88 5.88 85.63 0.50 4.38 16 18 C -0.16 -3.77 9.63 25.65 0.25 -3.52 16 19 C -0.13 -3.94 9.63 25.65 0.25 -3.69 16 20 C 0.16 6.64 6.46 85.63 0.55 7.19 16 21 N -0.74 -39.18 5.59 -347.18 -1.94 -41.12 16 22 C -0.25 -14.90 9.99 84.03 0.84 -14.06 16 23 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 24 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 25 N -0.97 -60.14 13.06 21.65 0.28 -59.86 16 26 Si 0.97 47.45 29.55 68.60 2.03 49.48 16 27 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 28 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 29 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 30 H 0.13 0.09 7.95 -2.38 -0.02 0.07 16 31 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.97 5.67 -2.39 -0.01 0.96 16 33 H 0.14 3.11 8.06 -2.91 -0.02 3.08 16 34 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 35 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 36 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 37 H 0.42 5.09 5.97 -92.71 -0.55 4.54 16 38 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.06 2.08 5.09 -2.39 -0.01 2.06 16 40 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 41 H 0.13 3.57 8.06 -2.91 -0.02 3.55 16 42 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.03 1.20 5.09 -2.38 -0.01 1.19 16 44 H 0.38 20.79 7.66 -92.71 -0.71 20.08 16 45 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -84.39 371.78 2.34 -82.05 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: -0.23 Total: 32.04 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 5.36 Total: -7.05 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -3.59 Total: -117.62 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -1.24 Total: -38.90 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -84.39 2.34 -82.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669183474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.564 kcal (2) G-P(sol) polarization free energy of solvation -84.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds