Wall clock time and date at job start Tue Mar 31 2020 17:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.74038 * 2 1 4 4 O 1.43177 * 109.70823 * 239.39244 * 2 1 3 5 5 C 1.36102 * 116.71336 * 194.14132 * 4 2 1 6 6 C 1.38705 * 119.40055 * 197.18381 * 5 4 2 7 7 C 1.38192 * 120.06627 * 180.21350 * 6 5 4 8 8 C 1.38258 * 120.11735 * 359.92133 * 7 6 5 9 9 C 1.38195 * 120.10806 * 359.97438 * 8 7 6 10 10 C 1.38698 * 120.06848 * 359.97438 * 9 8 7 11 11 O 1.36111 * 119.39099 * 180.28083 * 10 9 8 12 12 C 1.43180 * 116.68970 * 197.13746 * 11 10 9 13 13 H 1.08999 * 109.74405 * 73.44139 * 12 11 10 14 14 C 1.50703 * 109.70884 * 194.04691 * 12 11 10 15 15 O 1.21273 * 120.00271 * 184.73360 * 14 12 11 16 16 N 1.34779 * 119.99705 * 4.45685 * 14 12 11 17 17 C 1.46496 * 119.99739 * 175.26500 * 16 14 12 18 18 C 1.50700 * 109.47232 * 179.97438 * 17 16 14 19 19 C 1.30999 * 119.99823 * 127.20874 * 18 17 16 20 20 C 1.50703 * 120.00243 * 7.71472 * 19 18 17 21 21 N 1.46504 * 109.46846 * 127.21021 * 20 19 18 22 22 C 1.36935 * 119.99749 * 180.02562 * 21 20 19 23 23 H 1.07996 * 120.00415 * 359.97438 * 22 21 20 24 24 C 1.38818 * 119.99797 * 179.97438 * 22 21 20 25 25 N 1.31620 * 119.99984 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99811 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47047 * 59.99904 * 26 24 22 28 28 H 1.48504 * 109.47004 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47354 * 300.00002 * 26 24 22 30 30 H 1.08992 * 109.47444 * 307.23102 * 1 2 3 31 31 H 1.09000 * 109.46970 * 67.22845 * 1 2 3 32 32 H 1.09000 * 109.47509 * 187.22447 * 1 2 3 33 33 H 1.07993 * 119.96529 * 0.15519 * 6 5 4 34 34 H 1.08000 * 119.94138 * 179.97438 * 7 6 5 35 35 H 1.08000 * 119.94437 * 179.97438 * 8 7 6 36 36 H 1.08008 * 119.96050 * 179.97438 * 9 8 7 37 37 H 0.96993 * 120.00201 * 355.26731 * 16 14 12 38 38 H 1.09006 * 109.47557 * 300.00501 * 17 16 14 39 39 H 1.09004 * 109.46935 * 60.00502 * 17 16 14 40 40 H 1.08000 * 120.00361 * 307.20669 * 18 17 16 41 41 H 1.08001 * 120.00102 * 187.72228 * 19 18 17 42 42 H 1.08996 * 109.47060 * 247.20812 * 20 19 18 43 43 H 1.09001 * 109.46911 * 7.21190 * 20 19 18 44 44 H 0.97001 * 119.99908 * 359.97438 * 21 20 19 45 45 H 0.96998 * 119.99287 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 8 2.0129 -0.6863 -1.1601 5 6 3.3290 -1.0328 -1.1624 6 6 3.9437 -1.3648 -2.3607 7 6 5.2782 -1.7229 -2.3784 8 6 6.0049 -1.7498 -1.2025 9 6 5.3992 -1.4181 -0.0055 10 6 4.0603 -1.0567 0.0191 11 8 3.4791 -0.7270 1.2049 12 6 2.0479 -0.7330 1.2433 13 1 1.6837 -1.7604 1.2404 14 6 1.5698 -0.0279 2.4864 15 8 0.3865 0.0006 2.7503 16 7 2.4579 0.5662 3.3078 17 6 1.9869 1.3395 4.4595 18 6 3.1702 1.8944 5.2098 19 6 3.2346 3.1753 5.4766 20 6 2.0524 4.0650 5.1901 21 7 1.7063 4.8207 6.3966 22 6 0.6566 5.6998 6.3762 23 1 0.0841 5.8364 5.4707 24 6 0.3283 6.4154 7.5195 25 7 1.0257 6.2486 8.6232 26 14 -1.1032 7.6152 7.4915 27 1 -2.3525 6.8873 7.1527 28 1 -1.2458 8.2469 8.8278 29 1 -0.8497 8.6646 6.4718 30 1 -0.3634 0.6217 0.8181 31 1 -0.3633 0.3978 -0.9476 32 1 -0.3634 -1.0195 0.1292 33 1 3.3784 -1.3443 -3.2807 34 1 5.7547 -1.9815 -3.3125 35 1 7.0477 -2.0305 -1.2195 36 1 5.9690 -1.4403 0.9118 37 1 3.4089 0.4818 3.1365 38 1 1.3582 2.1601 4.1137 39 1 1.4094 0.6926 5.1198 40 1 3.9651 1.2360 5.5278 41 1 4.1349 3.5939 5.9016 42 1 2.3051 4.7578 4.3875 43 1 1.2022 3.4535 4.8880 44 1 2.2203 4.6977 7.2100 45 1 0.7960 6.7484 9.4221 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669183476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:28 Heat of formation + Delta-G solvation = -41.346116 kcal Electronic energy + Delta-G solvation = -27639.530825 eV Core-core repulsion = 23624.021578 eV Total energy + Delta-G solvation = -4015.509247 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.93053 -39.86135 -38.06444 -37.71205 -36.67815 -34.62060 -33.18166 -32.87462 -31.15566 -30.45825 -29.46603 -28.18275 -26.27480 -24.86958 -23.98179 -23.09581 -22.50969 -21.75256 -20.51907 -19.37388 -19.00425 -17.99538 -17.73433 -16.91986 -16.35903 -16.23573 -16.11449 -15.49484 -15.33393 -15.15743 -14.85615 -14.54316 -14.26919 -14.22917 -13.93302 -13.50879 -13.41051 -13.23468 -12.96997 -12.69503 -12.65102 -12.44376 -12.30346 -12.20958 -11.77122 -11.75406 -11.34051 -10.98729 -10.89732 -10.80000 -10.49655 -10.18245 -10.08306 -9.79592 -9.28368 -9.06782 -9.05933 -8.65180 -8.49519 -6.94592 -5.78571 -3.08032 0.88401 0.90175 2.09461 2.21811 2.44739 2.64830 3.14240 3.31496 3.44247 3.48303 3.49612 3.73676 4.16563 4.29070 4.35460 4.59716 4.60779 4.63359 4.85278 4.87800 4.96296 4.99095 5.01926 5.24917 5.31302 5.43283 5.54091 5.54988 5.62278 5.73819 5.75366 5.80085 5.90788 5.91515 6.06650 6.17112 6.19916 6.23472 6.44742 6.49119 6.52900 6.83201 6.96358 7.09242 7.30873 7.67662 7.90545 8.39760 9.51080 10.06613 10.42003 11.44064 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019245 B = 0.002137 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.611909 B =13096.698280 C =13738.712554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.069 3.931 3 H 0.090 0.910 4 O -0.299 6.299 5 C 0.053 3.947 6 C -0.115 4.115 7 C -0.115 4.115 8 C -0.117 4.117 9 C -0.110 4.110 10 C 0.050 3.950 11 O -0.304 6.304 12 C 0.040 3.960 13 H 0.116 0.884 14 C 0.530 3.470 15 O -0.520 6.520 16 N -0.705 5.705 17 C 0.138 3.862 18 C -0.200 4.200 19 C -0.107 4.107 20 C 0.162 3.838 21 N -0.727 5.727 22 C -0.243 4.243 23 H 0.071 0.929 24 C -0.013 4.013 25 N -0.933 5.933 26 Si 0.910 3.090 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.285 1.285 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.408 0.592 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.028 0.972 43 H 0.035 0.965 44 H 0.385 0.615 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.020 -19.625 -22.120 31.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.012 3.988 3 H 0.108 0.892 4 O -0.214 6.214 5 C 0.008 3.992 6 C -0.133 4.133 7 C -0.133 4.133 8 C -0.136 4.136 9 C -0.128 4.128 10 C 0.006 3.994 11 O -0.219 6.219 12 C -0.020 4.020 13 H 0.134 0.866 14 C 0.313 3.687 15 O -0.396 6.396 16 N -0.356 5.356 17 C 0.016 3.984 18 C -0.220 4.220 19 C -0.127 4.127 20 C 0.035 3.965 21 N -0.372 5.372 22 C -0.373 4.373 23 H 0.089 0.911 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.740 3.260 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.212 1.212 30 H 0.119 0.881 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.244 0.756 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.046 0.954 43 H 0.052 0.948 44 H 0.219 0.781 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.951 -19.444 -21.919 30.637 hybrid contribution -0.058 0.557 0.417 0.698 sum 8.892 -18.887 -21.502 29.969 Atomic orbital electron populations 1.21928 0.89402 1.04675 1.04356 1.22943 0.98005 0.95337 0.82534 0.89181 1.86380 1.21401 1.73114 1.40525 1.18997 0.84467 1.02230 0.93531 1.20473 0.94791 1.02445 0.95632 1.20955 0.93129 1.00438 0.98753 1.20945 1.00285 1.00777 0.91560 1.20486 0.91784 1.00911 0.99653 1.18902 0.93879 1.03020 0.83628 1.86210 1.19759 1.85322 1.30622 1.23454 0.80160 1.02383 0.96019 0.86627 1.19511 0.86477 0.79221 0.83478 1.90794 1.15811 1.60119 1.72910 1.46054 1.10543 1.51498 1.27521 1.20673 0.95822 0.95617 0.86295 1.22563 0.99552 0.96065 1.03806 1.23308 0.98953 0.94576 0.95816 1.20005 0.92410 0.92554 0.91533 1.42262 1.37574 1.48311 1.09022 1.19192 1.06435 1.15096 0.96627 0.91120 1.24768 0.99683 1.00637 0.95837 1.69657 1.41887 1.45193 1.01364 0.86231 0.82200 0.80935 0.76603 1.21149 1.21631 1.21199 0.88131 0.90749 0.91072 0.84723 0.85005 0.84943 0.84559 0.75613 0.89053 0.90640 0.86929 0.86779 0.95407 0.94767 0.78131 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.84 37.16 0.33 -1.06 16 2 C 0.07 0.70 3.16 -26.56 -0.08 0.62 16 3 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 4 O -0.30 -3.21 10.07 -32.85 -0.33 -3.55 16 5 C 0.05 0.54 6.49 -39.14 -0.25 0.28 16 6 C -0.11 -0.94 9.96 -39.43 -0.39 -1.33 16 7 C -0.11 -0.75 10.04 -39.59 -0.40 -1.15 16 8 C -0.12 -0.77 10.04 -39.59 -0.40 -1.17 16 9 C -0.11 -0.88 9.96 -39.43 -0.39 -1.28 16 10 C 0.05 0.50 6.49 -39.14 -0.25 0.25 16 11 O -0.30 -3.11 8.81 -32.87 -0.29 -3.40 16 12 C 0.04 0.41 3.07 -27.71 -0.08 0.33 16 13 H 0.12 1.13 8.14 -51.93 -0.42 0.70 16 14 C 0.53 6.56 7.08 -10.98 -0.08 6.48 16 15 O -0.52 -7.89 14.71 5.56 0.08 -7.81 16 16 N -0.70 -8.28 5.50 -61.47 -0.34 -8.62 16 17 C 0.14 1.90 5.76 -5.20 -0.03 1.87 16 18 C -0.20 -2.69 9.63 -36.03 -0.35 -3.04 16 19 C -0.11 -1.71 9.63 -36.02 -0.35 -2.06 16 20 C 0.16 3.25 6.34 -5.19 -0.03 3.22 16 21 N -0.73 -18.63 5.59 -61.08 -0.34 -18.98 16 22 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 23 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 26 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 27 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 H 0.10 1.09 6.34 -51.93 -0.33 0.76 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 35 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 36 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 37 H 0.41 4.10 7.27 -40.82 -0.30 3.81 16 38 H 0.09 1.43 5.31 -51.93 -0.28 1.15 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.03 0.70 5.31 -51.93 -0.28 0.42 16 44 H 0.39 10.32 7.66 -40.82 -0.31 10.01 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 375.82 15.07 5.66 5.66 Total: -1.00 -32.64 375.82 -8.97 -41.62 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -6.11 Total: 10.69 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -3.01 Total: -5.54 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.04 Total: -55.24 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.54 Total: -14.75 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.64 -8.97 -41.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669183476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.269 kcal (2) G-P(sol) polarization free energy of solvation -32.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds