Wall clock time and date at job start Tue Mar 31 2020 17:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.74038 * 2 1 4 4 O 1.43177 * 109.70823 * 239.39244 * 2 1 3 5 5 C 1.36102 * 116.71336 * 194.14132 * 4 2 1 6 6 C 1.38705 * 119.40055 * 197.18381 * 5 4 2 7 7 C 1.38192 * 120.06627 * 180.21350 * 6 5 4 8 8 C 1.38258 * 120.11735 * 359.92133 * 7 6 5 9 9 C 1.38195 * 120.10806 * 359.97438 * 8 7 6 10 10 C 1.38698 * 120.06848 * 359.97438 * 9 8 7 11 11 O 1.36111 * 119.39099 * 180.28083 * 10 9 8 12 12 C 1.43180 * 116.68970 * 197.13746 * 11 10 9 13 13 H 1.08999 * 109.74405 * 73.44139 * 12 11 10 14 14 C 1.50703 * 109.70884 * 194.04691 * 12 11 10 15 15 O 1.21273 * 120.00271 * 184.73360 * 14 12 11 16 16 N 1.34779 * 119.99705 * 4.45685 * 14 12 11 17 17 C 1.46496 * 119.99739 * 175.26500 * 16 14 12 18 18 C 1.50700 * 109.47232 * 179.97438 * 17 16 14 19 19 C 1.30999 * 119.99823 * 127.20874 * 18 17 16 20 20 C 1.50703 * 120.00243 * 7.71472 * 19 18 17 21 21 N 1.46504 * 109.46846 * 127.21021 * 20 19 18 22 22 C 1.36935 * 119.99749 * 180.02562 * 21 20 19 23 23 H 1.07996 * 120.00415 * 359.97438 * 22 21 20 24 24 C 1.38818 * 119.99797 * 179.97438 * 22 21 20 25 25 N 1.31620 * 119.99984 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99811 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47047 * 59.99904 * 26 24 22 28 28 H 1.48504 * 109.47004 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47354 * 300.00002 * 26 24 22 30 30 H 1.08992 * 109.47444 * 307.23102 * 1 2 3 31 31 H 1.09000 * 109.46970 * 67.22845 * 1 2 3 32 32 H 1.09000 * 109.47509 * 187.22447 * 1 2 3 33 33 H 1.07993 * 119.96529 * 0.15519 * 6 5 4 34 34 H 1.08000 * 119.94138 * 179.97438 * 7 6 5 35 35 H 1.08000 * 119.94437 * 179.97438 * 8 7 6 36 36 H 1.08008 * 119.96050 * 179.97438 * 9 8 7 37 37 H 0.96993 * 120.00201 * 355.26731 * 16 14 12 38 38 H 1.09006 * 109.47557 * 300.00501 * 17 16 14 39 39 H 1.09004 * 109.46935 * 60.00502 * 17 16 14 40 40 H 1.08000 * 120.00361 * 307.20669 * 18 17 16 41 41 H 1.08001 * 120.00102 * 187.72228 * 19 18 17 42 42 H 1.08996 * 109.47060 * 247.20812 * 20 19 18 43 43 H 1.09001 * 109.46911 * 7.21190 * 20 19 18 44 44 H 0.97001 * 119.99908 * 359.97438 * 21 20 19 45 45 H 0.96998 * 119.99287 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 8 2.0129 -0.6863 -1.1601 5 6 3.3290 -1.0328 -1.1624 6 6 3.9437 -1.3648 -2.3607 7 6 5.2782 -1.7229 -2.3784 8 6 6.0049 -1.7498 -1.2025 9 6 5.3992 -1.4181 -0.0055 10 6 4.0603 -1.0567 0.0191 11 8 3.4791 -0.7270 1.2049 12 6 2.0479 -0.7330 1.2433 13 1 1.6837 -1.7604 1.2404 14 6 1.5698 -0.0279 2.4864 15 8 0.3865 0.0006 2.7503 16 7 2.4579 0.5662 3.3078 17 6 1.9869 1.3395 4.4595 18 6 3.1702 1.8944 5.2098 19 6 3.2346 3.1753 5.4766 20 6 2.0524 4.0650 5.1901 21 7 1.7063 4.8207 6.3966 22 6 0.6566 5.6998 6.3762 23 1 0.0841 5.8364 5.4707 24 6 0.3283 6.4154 7.5195 25 7 1.0257 6.2486 8.6232 26 14 -1.1032 7.6152 7.4915 27 1 -2.3525 6.8873 7.1527 28 1 -1.2458 8.2469 8.8278 29 1 -0.8497 8.6646 6.4718 30 1 -0.3634 0.6217 0.8181 31 1 -0.3633 0.3978 -0.9476 32 1 -0.3634 -1.0195 0.1292 33 1 3.3784 -1.3443 -3.2807 34 1 5.7547 -1.9815 -3.3125 35 1 7.0477 -2.0305 -1.2195 36 1 5.9690 -1.4403 0.9118 37 1 3.4089 0.4818 3.1365 38 1 1.3582 2.1601 4.1137 39 1 1.4094 0.6926 5.1198 40 1 3.9651 1.2360 5.5278 41 1 4.1349 3.5939 5.9016 42 1 2.3051 4.7578 4.3875 43 1 1.2022 3.4535 4.8880 44 1 2.2203 4.6977 7.2100 45 1 0.7960 6.7484 9.4221 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669183476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:27 Heat of formation + Delta-G solvation = -62.855263 kcal Electronic energy + Delta-G solvation = -27640.463532 eV Core-core repulsion = 23624.021578 eV Total energy + Delta-G solvation = -4016.441953 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.68500 -40.82821 -38.74036 -38.46335 -38.02586 -36.18952 -34.46342 -33.93084 -32.40541 -31.70113 -30.11511 -29.14897 -27.69732 -26.31256 -24.73069 -24.40210 -23.71435 -22.58122 -21.43867 -20.30370 -20.06960 -19.23396 -18.67521 -18.36058 -17.52162 -17.07189 -16.97083 -16.66446 -16.27505 -16.22646 -15.77430 -15.66222 -15.41130 -15.21535 -15.06856 -14.83192 -14.76469 -14.24664 -14.16946 -14.06580 -13.54013 -13.42980 -13.19686 -13.00303 -12.93405 -12.81179 -12.71407 -12.37270 -12.23580 -12.06385 -11.91917 -11.71081 -11.64849 -11.18239 -11.01668 -10.43376 -9.99490 -9.66666 -9.15345 -9.00885 -7.98248 -5.27914 0.28244 0.30297 0.96913 1.17215 1.46169 1.49442 1.55633 1.68368 1.84068 2.19868 2.55415 2.72831 2.94931 3.34960 3.44405 3.49204 3.53191 3.75608 3.86433 4.05839 4.10132 4.13653 4.15906 4.28516 4.30893 4.42496 4.49467 4.56021 4.62898 4.69558 4.79769 4.88437 4.89403 5.00447 5.09467 5.16216 5.22469 5.25734 5.44686 5.52765 5.55551 5.65209 5.76994 5.81328 6.23731 6.24579 6.36048 6.92899 7.30183 8.03732 8.28429 9.24867 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019245 B = 0.002137 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.611909 B =13096.698280 C =13738.712554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.070 3.930 3 H 0.085 0.915 4 O -0.309 6.309 5 C 0.025 3.975 6 C -0.124 4.124 7 C -0.109 4.109 8 C -0.113 4.113 9 C -0.117 4.117 10 C 0.027 3.973 11 O -0.308 6.308 12 C 0.049 3.951 13 H 0.122 0.878 14 C 0.531 3.469 15 O -0.550 6.550 16 N -0.695 5.695 17 C 0.139 3.861 18 C -0.162 4.162 19 C -0.132 4.132 20 C 0.161 3.839 21 N -0.741 5.741 22 C -0.251 4.251 23 H 0.074 0.926 24 C -0.075 4.075 25 N -0.967 5.967 26 Si 0.976 3.024 27 H -0.278 1.278 28 H -0.292 1.292 29 H -0.276 1.276 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.145 0.855 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.150 0.850 37 H 0.419 0.581 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.148 0.852 41 H 0.124 0.876 42 H 0.025 0.975 43 H 0.035 0.965 44 H 0.376 0.624 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.501 -20.875 -23.780 33.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.013 3.987 3 H 0.103 0.897 4 O -0.224 6.224 5 C -0.019 4.019 6 C -0.142 4.142 7 C -0.127 4.127 8 C -0.130 4.130 9 C -0.135 4.135 10 C -0.017 4.017 11 O -0.223 6.223 12 C -0.011 4.011 13 H 0.139 0.861 14 C 0.316 3.684 15 O -0.429 6.429 16 N -0.347 5.347 17 C 0.016 3.984 18 C -0.181 4.181 19 C -0.151 4.151 20 C 0.035 3.965 21 N -0.384 5.384 22 C -0.383 4.383 23 H 0.092 0.908 24 C -0.267 4.267 25 N -0.618 5.618 26 Si 0.804 3.196 27 H -0.204 1.204 28 H -0.218 1.218 29 H -0.202 1.202 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.163 0.837 34 H 0.180 0.820 35 H 0.180 0.820 36 H 0.167 0.833 37 H 0.257 0.743 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.165 0.835 41 H 0.142 0.858 42 H 0.043 0.957 43 H 0.053 0.947 44 H 0.208 0.792 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 10.465 -20.716 -23.633 33.124 hybrid contribution -0.416 0.812 0.784 1.203 sum 10.050 -19.904 -22.849 31.925 Atomic orbital electron populations 1.21853 0.89162 1.04556 1.04283 1.22886 0.98186 0.95063 0.82566 0.89713 1.86351 1.22187 1.73398 1.40435 1.19332 0.84343 1.03722 0.94520 1.20776 0.95757 1.02307 0.95401 1.21362 0.92375 0.98847 1.00130 1.21361 1.01617 0.99224 0.90843 1.20800 0.91119 1.00582 1.01020 1.19196 0.94749 1.04462 0.83318 1.86165 1.19222 1.85744 1.31179 1.23252 0.80734 1.02270 0.94822 0.86077 1.19799 0.86025 0.78770 0.83832 1.90781 1.17139 1.61235 1.73736 1.45894 1.11091 1.50913 1.26790 1.20505 0.95891 0.95093 0.86890 1.22767 0.99327 0.95315 1.00732 1.23050 0.98169 0.94902 0.98989 1.20086 0.94283 0.92657 0.89443 1.42472 1.36947 1.48649 1.10350 1.19595 1.06820 1.15163 0.96700 0.90770 1.25614 1.02594 1.02845 0.95652 1.69809 1.43655 1.46456 1.01839 0.85184 0.79131 0.78807 0.76476 1.20443 1.21849 1.20214 0.89682 0.89648 0.90815 0.83746 0.82046 0.81982 0.83271 0.74333 0.91140 0.91139 0.83470 0.85786 0.95730 0.94731 0.79231 0.93842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 8.84 71.98 0.64 -2.09 16 2 C 0.07 1.44 3.16 30.71 0.10 1.53 16 3 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 4 O -0.31 -6.58 10.07 -82.50 -0.83 -7.41 16 5 C 0.03 0.50 6.49 22.56 0.15 0.64 16 6 C -0.12 -1.83 9.96 22.37 0.22 -1.61 16 7 C -0.11 -1.10 10.04 22.26 0.22 -0.88 16 8 C -0.11 -1.12 10.04 22.26 0.22 -0.90 16 9 C -0.12 -1.64 9.96 22.37 0.22 -1.42 16 10 C 0.03 0.51 6.49 22.56 0.15 0.66 16 11 O -0.31 -6.05 8.81 -82.59 -0.73 -6.78 16 12 C 0.05 1.01 3.07 29.96 0.09 1.11 16 13 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 14 C 0.53 13.11 7.08 87.66 0.62 13.73 16 15 O -0.55 -17.01 14.71 -3.01 -0.04 -17.05 16 16 N -0.70 -15.72 5.50 -466.79 -2.57 -18.29 16 17 C 0.14 3.74 5.76 85.63 0.49 4.23 16 18 C -0.16 -4.06 9.63 25.65 0.25 -3.81 16 19 C -0.13 -4.10 9.63 25.65 0.25 -3.86 16 20 C 0.16 6.53 6.34 85.63 0.54 7.07 16 21 N -0.74 -38.59 5.59 -347.17 -1.94 -40.53 16 22 C -0.25 -14.38 9.99 84.04 0.84 -13.54 16 23 H 0.07 4.09 7.83 -2.91 -0.02 4.06 16 24 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 25 N -0.97 -59.78 13.06 21.65 0.28 -59.49 16 26 Si 0.98 46.76 29.55 68.60 2.03 48.78 16 27 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 28 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 29 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 30 H 0.08 1.92 6.34 -2.39 -0.02 1.91 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 34 H 0.16 0.64 8.06 -2.91 -0.02 0.61 16 35 H 0.16 0.62 8.06 -2.91 -0.02 0.60 16 36 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 37 H 0.42 7.74 7.27 -92.71 -0.67 7.06 16 38 H 0.07 2.23 5.31 -2.38 -0.01 2.22 16 39 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 40 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 41 H 0.12 3.63 8.06 -2.91 -0.02 3.61 16 42 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.04 1.42 5.31 -2.39 -0.01 1.41 16 44 H 0.38 20.58 7.66 -92.71 -0.71 19.87 16 45 H 0.25 15.11 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -71.07 375.82 1.31 -69.76 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: -0.35 Total: 34.03 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 5.47 Total: -3.02 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -4.23 Total: -118.32 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -1.60 Total: -31.24 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.78 kcal Total: -71.07 1.31 -69.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669183476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.901 kcal (2) G-P(sol) polarization free energy of solvation -71.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds