Wall clock time and date at job start Tue Mar 31 2020 18:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35948 * 117.00317 * 2 1 4 4 C 1.38334 * 120.05956 * 359.97438 * 3 2 1 5 5 C 1.38607 * 120.58949 * 180.02562 * 4 3 2 6 6 C 1.37871 * 120.24884 * 359.97438 * 5 4 3 7 7 C 1.39193 * 119.73078 * 359.97438 * 6 5 4 8 8 C 1.47662 * 134.22179 * 179.97438 * 7 6 5 9 9 C 1.47068 * 127.13868 * 0.03097 * 8 7 6 10 10 O 1.21654 * 120.00255 * 0.02699 * 9 8 7 11 11 N 1.34774 * 119.99837 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99824 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46802 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.46761 * 179.97438 * 13 12 11 15 15 H 1.09000 * 109.46939 * 304.99796 * 14 13 12 16 16 C 1.52999 * 109.47103 * 184.99793 * 14 13 12 17 17 N 1.46497 * 109.47277 * 64.99958 * 14 13 12 18 18 C 1.36942 * 119.99992 * 205.00139 * 17 14 13 19 19 H 1.07995 * 119.99882 * 359.97438 * 18 17 14 20 20 C 1.38815 * 119.99919 * 180.02562 * 18 17 14 21 21 N 1.31616 * 119.99875 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99931 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47175 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47484 * 119.99871 * 22 20 18 25 25 H 1.48496 * 109.47279 * 239.99865 * 22 20 18 26 26 C 1.36077 * 105.71988 * 180.02562 * 8 7 6 27 27 O 1.33774 * 109.83243 * 0.02562 * 26 8 7 28 28 C 1.34959 * 111.33563 * 0.02562 * 27 26 8 29 29 H 1.09001 * 109.47388 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46964 * 299.99562 * 1 2 3 31 31 H 1.09001 * 109.47274 * 60.00026 * 1 2 3 32 32 H 1.08002 * 119.70648 * 0.02562 * 4 3 2 33 33 H 1.07995 * 119.87508 * 180.02562 * 5 4 3 34 34 H 1.07998 * 120.13714 * 179.97438 * 6 5 4 35 35 H 0.97003 * 120.00231 * 359.97438 * 11 9 8 36 36 H 1.09001 * 109.47062 * 299.99790 * 12 11 9 37 37 H 1.08993 * 109.47643 * 60.00139 * 12 11 9 38 38 H 1.08999 * 109.47415 * 299.99296 * 13 12 11 39 39 H 1.08991 * 109.47359 * 60.00025 * 13 12 11 40 40 H 1.09002 * 109.46864 * 60.00123 * 16 14 13 41 41 H 1.08995 * 109.47103 * 179.97438 * 16 14 13 42 42 H 1.08992 * 109.47419 * 300.00120 * 16 14 13 43 43 H 0.96996 * 120.00059 * 24.99975 * 17 14 13 44 44 H 0.97002 * 120.00011 * 180.02562 * 21 20 18 45 45 H 1.08001 * 125.07971 * 180.26753 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2941 2.3723 -0.0005 5 6 1.9120 3.6130 -0.0011 6 6 3.2877 3.7038 -0.0006 7 6 4.0561 2.5431 0.0011 8 6 5.5070 2.2686 0.0015 9 6 6.5974 3.2554 0.0009 10 8 6.3415 4.4448 0.0004 11 7 7.8802 2.8422 0.0010 12 6 8.9664 3.8253 0.0010 13 6 10.3125 3.0979 0.0004 14 6 11.4469 4.1246 -0.0003 15 1 11.3204 4.8053 -0.8422 16 6 12.7893 3.4013 -0.1266 17 7 11.4179 4.8852 1.2514 18 6 11.9522 6.1452 1.2995 19 1 12.3953 6.5779 0.4148 20 6 11.9253 6.8657 2.4857 21 7 11.3857 6.3381 3.5640 22 14 12.6547 8.5841 2.5515 23 1 13.1957 8.9437 1.2160 24 1 11.5995 9.5554 2.9365 25 1 13.7494 8.6191 3.5542 26 6 5.6257 0.9130 0.0028 27 8 4.4117 0.3511 0.0025 28 6 3.4380 1.2857 0.0006 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.2158 2.3114 -0.0005 33 1 1.3136 4.5120 -0.0011 34 1 3.7673 4.6714 -0.0014 35 1 8.0843 1.8939 0.0018 36 1 8.8911 4.4500 -0.8891 37 1 8.8911 4.4501 0.8908 38 1 10.3882 2.4729 0.8902 39 1 10.3877 2.4734 -0.8897 40 1 12.8108 2.8354 -1.0579 41 1 13.5974 4.1328 -0.1275 42 1 12.9158 2.7206 0.7152 43 1 11.0203 4.4964 2.0461 44 1 11.3665 6.8417 4.3928 45 1 6.5603 0.3718 0.0076 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674188022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:33 Heat of formation + Delta-G solvation = -34.556004 kcal Electronic energy + Delta-G solvation = -27248.118851 eV Core-core repulsion = 23232.904046 eV Total energy + Delta-G solvation = -4015.214805 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.85202 -39.86176 -39.26391 -37.20508 -36.54361 -34.38469 -32.88818 -32.15481 -30.65412 -29.83334 -28.96546 -28.00404 -27.62257 -24.45047 -23.67882 -23.16209 -22.61813 -21.87766 -20.44773 -19.69700 -18.56586 -18.03391 -17.19378 -17.01574 -16.78787 -15.97706 -15.81918 -15.70474 -15.38924 -15.28815 -15.15392 -14.65350 -13.91447 -13.85278 -13.54770 -13.47956 -13.21453 -12.95237 -12.69158 -12.57845 -12.48119 -12.03767 -11.73775 -11.63243 -11.56995 -11.53871 -11.09102 -10.91602 -10.74379 -10.62630 -10.28488 -10.03982 -10.01295 -9.78094 -9.62285 -8.96229 -8.91367 -8.82469 -8.13082 -6.93163 -5.73103 -3.01755 0.53639 0.99131 1.56686 2.31159 2.76780 3.19758 3.26394 3.46622 3.52232 3.54419 3.55767 4.08966 4.34652 4.47357 4.62798 4.65932 4.73694 4.81826 4.90629 5.01555 5.04774 5.08754 5.22127 5.32360 5.39821 5.57498 5.66426 5.69549 5.80407 5.88432 6.06452 6.07476 6.18231 6.22966 6.30948 6.35035 6.40216 6.47127 6.47468 6.66180 6.71190 6.87183 7.01414 7.06875 7.60610 7.74667 8.33377 8.45218 9.56705 10.13263 10.47694 11.49564 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019342 B = 0.002156 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.292870 B =12981.290871 C =13964.604654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.143 3.857 4 C -0.190 4.190 5 C -0.092 4.092 6 C -0.096 4.096 7 C -0.052 4.052 8 C -0.225 4.225 9 C 0.582 3.418 10 O -0.527 6.527 11 N -0.724 5.724 12 C 0.123 3.877 13 C -0.133 4.133 14 C 0.174 3.826 15 H 0.050 0.950 16 C -0.163 4.163 17 N -0.723 5.723 18 C -0.237 4.237 19 H 0.071 0.929 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.293 1.293 26 C 0.069 3.931 27 O -0.173 6.173 28 C 0.018 3.982 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.141 0.859 33 H 0.136 0.864 34 H 0.143 0.857 35 H 0.393 0.607 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.035 0.965 41 H 0.054 0.946 42 H 0.046 0.954 43 H 0.383 0.617 44 H 0.254 0.746 45 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.739 -16.111 -9.549 27.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.098 3.902 4 C -0.209 4.209 5 C -0.111 4.111 6 C -0.114 4.114 7 C -0.054 4.054 8 C -0.230 4.230 9 C 0.369 3.631 10 O -0.404 6.404 11 N -0.375 5.375 12 C 0.001 3.999 13 C -0.171 4.171 14 C 0.063 3.937 15 H 0.068 0.932 16 C -0.223 4.223 17 N -0.365 5.365 18 C -0.368 4.368 19 H 0.089 0.911 20 C -0.210 4.210 21 N -0.580 5.580 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.220 1.220 26 C 0.000 4.000 27 O -0.072 6.072 28 C -0.028 4.028 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.158 0.842 33 H 0.153 0.847 34 H 0.160 0.840 35 H 0.226 0.774 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -20.832 -15.527 -9.586 27.694 hybrid contribution 0.344 0.515 0.463 0.773 sum -20.489 -15.012 -9.123 26.988 Atomic orbital electron populations 1.23106 0.77921 1.04231 1.01565 1.86139 1.21687 1.26106 1.88871 1.17643 0.86492 0.85570 1.00509 1.20969 0.99917 0.91082 1.08925 1.20894 0.94091 0.97101 0.98967 1.20694 0.92795 0.98032 0.99876 1.19213 0.91094 0.92858 1.02203 1.21077 0.93178 0.93518 1.15197 1.17023 0.81690 0.87448 0.76957 1.90824 1.83660 1.16639 1.49322 1.45945 1.05639 1.10401 1.75515 1.21495 0.83917 0.90694 1.03801 1.22069 0.94381 0.99059 1.01633 1.20153 0.90940 0.91364 0.91194 0.93244 1.22423 1.00517 1.00248 0.99154 1.42458 1.71142 1.15515 1.07432 1.19265 1.30557 0.91400 0.95593 0.91143 1.24732 1.01697 0.98616 0.95937 1.69663 1.50215 1.37519 1.00643 0.86146 0.78310 0.84683 0.77228 1.20586 1.21884 1.22009 1.24532 0.87327 0.92214 0.95937 1.83883 1.13393 1.35249 1.74719 1.18587 0.87534 0.86662 1.10040 0.88014 0.92361 0.92400 0.84181 0.84654 0.83957 0.77392 0.91592 0.89487 0.91549 0.91879 0.94582 0.92720 0.93524 0.78289 0.93616 0.76483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.16 10.50 -19.58 -0.21 -3.37 16 3 C 0.14 1.59 6.70 -39.12 -0.26 1.32 16 4 C -0.19 -1.71 9.02 -39.41 -0.36 -2.07 16 5 C -0.09 -0.90 10.03 -39.58 -0.40 -1.30 16 6 C -0.10 -1.22 9.88 -39.36 -0.39 -1.61 16 7 C -0.05 -0.71 6.29 -104.99 -0.66 -1.37 16 8 C -0.22 -2.95 6.31 -103.25 -0.65 -3.60 16 9 C 0.58 9.09 7.80 -12.68 -0.10 8.99 16 10 O -0.53 -10.52 16.28 5.23 0.09 -10.43 16 11 N -0.72 -9.58 5.55 -61.49 -0.34 -9.92 16 12 C 0.12 2.01 5.56 -4.04 -0.02 1.99 16 13 C -0.13 -1.95 4.87 -26.73 -0.13 -2.08 16 14 C 0.17 3.27 2.89 -67.93 -0.20 3.08 16 15 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 16 C -0.16 -2.80 9.49 37.16 0.35 -2.45 16 17 N -0.72 -17.57 4.57 -53.43 -0.24 -17.81 16 18 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -28.31 13.06 55.49 0.72 -27.59 16 22 Si 0.90 22.70 29.55 -169.99 -5.02 17.68 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 26 C 0.07 0.66 11.52 29.96 0.35 1.01 16 27 O -0.17 -2.03 10.53 5.27 0.06 -1.97 16 28 C 0.02 0.23 7.33 -38.45 -0.28 -0.05 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 31 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 32 H 0.14 0.81 6.26 -52.49 -0.33 0.49 16 33 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.14 1.94 7.53 -52.49 -0.40 1.54 16 35 H 0.39 3.59 7.40 -40.82 -0.30 3.29 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.09 1.79 7.75 -51.93 -0.40 1.38 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.38 9.95 7.80 -40.82 -0.32 9.63 16 44 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.22 0.99 7.41 -52.49 -0.39 0.60 16 LS Contribution 383.01 15.07 5.77 5.77 Total: -1.00 -35.88 383.01 -7.46 -43.33 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -6.28 Total: 8.48 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -2.00 Total: -4.17 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: 0.14 Total: -55.32 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.06 Total: -15.77 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.88 -7.46 -43.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674188022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.778 kcal (2) G-P(sol) polarization free energy of solvation -35.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds