Wall clock time and date at job start Tue Mar 31 2020 18:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35948 * 117.00317 * 2 1 4 4 C 1.38334 * 120.05956 * 359.97438 * 3 2 1 5 5 C 1.38607 * 120.58949 * 180.02562 * 4 3 2 6 6 C 1.37871 * 120.24884 * 359.97438 * 5 4 3 7 7 C 1.39193 * 119.73078 * 359.97438 * 6 5 4 8 8 C 1.47662 * 134.22179 * 179.97438 * 7 6 5 9 9 C 1.47068 * 127.13868 * 0.03097 * 8 7 6 10 10 O 1.21654 * 120.00255 * 0.02699 * 9 8 7 11 11 N 1.34774 * 119.99837 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99824 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46802 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.46761 * 179.97438 * 13 12 11 15 15 H 1.09000 * 109.46939 * 304.99796 * 14 13 12 16 16 C 1.52999 * 109.47103 * 184.99793 * 14 13 12 17 17 N 1.46497 * 109.47277 * 64.99958 * 14 13 12 18 18 C 1.36942 * 119.99992 * 205.00139 * 17 14 13 19 19 H 1.07995 * 119.99882 * 359.97438 * 18 17 14 20 20 C 1.38815 * 119.99919 * 180.02562 * 18 17 14 21 21 N 1.31616 * 119.99875 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99931 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47175 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47484 * 119.99871 * 22 20 18 25 25 H 1.48496 * 109.47279 * 239.99865 * 22 20 18 26 26 C 1.36077 * 105.71988 * 180.02562 * 8 7 6 27 27 O 1.33774 * 109.83243 * 0.02562 * 26 8 7 28 28 C 1.34959 * 111.33563 * 0.02562 * 27 26 8 29 29 H 1.09001 * 109.47388 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46964 * 299.99562 * 1 2 3 31 31 H 1.09001 * 109.47274 * 60.00026 * 1 2 3 32 32 H 1.08002 * 119.70648 * 0.02562 * 4 3 2 33 33 H 1.07995 * 119.87508 * 180.02562 * 5 4 3 34 34 H 1.07998 * 120.13714 * 179.97438 * 6 5 4 35 35 H 0.97003 * 120.00231 * 359.97438 * 11 9 8 36 36 H 1.09001 * 109.47062 * 299.99790 * 12 11 9 37 37 H 1.08993 * 109.47643 * 60.00139 * 12 11 9 38 38 H 1.08999 * 109.47415 * 299.99296 * 13 12 11 39 39 H 1.08991 * 109.47359 * 60.00025 * 13 12 11 40 40 H 1.09002 * 109.46864 * 60.00123 * 16 14 13 41 41 H 1.08995 * 109.47103 * 179.97438 * 16 14 13 42 42 H 1.08992 * 109.47419 * 300.00120 * 16 14 13 43 43 H 0.96996 * 120.00059 * 24.99975 * 17 14 13 44 44 H 0.97002 * 120.00011 * 180.02562 * 21 20 18 45 45 H 1.08001 * 125.07971 * 180.26753 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2941 2.3723 -0.0005 5 6 1.9120 3.6130 -0.0011 6 6 3.2877 3.7038 -0.0006 7 6 4.0561 2.5431 0.0011 8 6 5.5070 2.2686 0.0015 9 6 6.5974 3.2554 0.0009 10 8 6.3415 4.4448 0.0004 11 7 7.8802 2.8422 0.0010 12 6 8.9664 3.8253 0.0010 13 6 10.3125 3.0979 0.0004 14 6 11.4469 4.1246 -0.0003 15 1 11.3204 4.8053 -0.8422 16 6 12.7893 3.4013 -0.1266 17 7 11.4179 4.8852 1.2514 18 6 11.9522 6.1452 1.2995 19 1 12.3953 6.5779 0.4148 20 6 11.9253 6.8657 2.4857 21 7 11.3857 6.3381 3.5640 22 14 12.6547 8.5841 2.5515 23 1 13.1957 8.9437 1.2160 24 1 11.5995 9.5554 2.9365 25 1 13.7494 8.6191 3.5542 26 6 5.6257 0.9130 0.0028 27 8 4.4117 0.3511 0.0025 28 6 3.4380 1.2857 0.0006 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.2158 2.3114 -0.0005 33 1 1.3136 4.5120 -0.0011 34 1 3.7673 4.6714 -0.0014 35 1 8.0843 1.8939 0.0018 36 1 8.8911 4.4500 -0.8891 37 1 8.8911 4.4501 0.8908 38 1 10.3882 2.4729 0.8902 39 1 10.3877 2.4734 -0.8897 40 1 12.8108 2.8354 -1.0579 41 1 13.5974 4.1328 -0.1275 42 1 12.9158 2.7206 0.7152 43 1 11.0203 4.4964 2.0461 44 1 11.3665 6.8417 4.3928 45 1 6.5603 0.3718 0.0076 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674188022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:32 Heat of formation + Delta-G solvation = -60.575084 kcal Electronic energy + Delta-G solvation = -27249.247123 eV Core-core repulsion = 23232.904046 eV Total energy + Delta-G solvation = -4016.343077 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.71464 -40.65555 -40.42849 -38.16051 -37.91573 -35.86425 -34.26663 -33.60393 -31.45666 -31.13999 -30.32206 -29.32963 -28.14521 -25.96825 -25.20234 -24.17822 -23.50969 -22.96982 -21.73251 -20.97865 -19.57137 -19.17808 -18.83709 -17.76693 -17.62590 -17.05233 -16.90269 -16.78658 -16.48336 -16.23615 -16.20854 -15.94260 -15.57973 -15.34810 -14.88871 -14.48052 -14.31452 -14.16184 -13.99081 -13.55584 -13.37596 -13.24270 -13.23241 -12.85639 -12.62226 -12.52621 -12.28551 -12.27144 -12.20514 -12.20252 -12.08573 -11.64754 -11.58811 -11.14149 -10.93781 -10.92719 -10.14593 -9.76500 -8.97143 -8.95588 -7.92103 -5.18377 -0.29105 0.13999 0.64336 1.45608 1.47103 1.52175 1.56107 1.98254 2.15425 2.27277 2.57459 2.62325 3.33174 3.42315 3.44299 3.80040 3.93676 3.96826 4.01917 4.07808 4.12404 4.25267 4.28806 4.39476 4.40111 4.42665 4.47017 4.69272 4.76691 4.79696 4.86966 4.92576 5.02159 5.05147 5.12549 5.21172 5.24853 5.39538 5.42648 5.42829 5.48386 5.55796 5.64361 5.68126 6.30367 6.31374 6.53992 7.20570 7.37221 8.16020 8.36586 9.31626 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019342 B = 0.002156 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.292870 B =12981.290871 C =13964.604654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.332 6.332 3 C 0.142 3.858 4 C -0.184 4.184 5 C -0.079 4.079 6 C -0.132 4.132 7 C -0.075 4.075 8 C -0.269 4.269 9 C 0.582 3.418 10 O -0.585 6.585 11 N -0.704 5.704 12 C 0.134 3.866 13 C -0.115 4.115 14 C 0.162 3.838 15 H 0.042 0.958 16 C -0.153 4.153 17 N -0.735 5.735 18 C -0.230 4.230 19 H 0.074 0.926 20 C -0.081 4.081 21 N -0.970 5.970 22 Si 0.966 3.034 23 H -0.266 1.266 24 H -0.299 1.299 25 H -0.294 1.294 26 C 0.113 3.887 27 O -0.176 6.176 28 C -0.007 4.007 29 H 0.120 0.880 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.178 0.822 33 H 0.163 0.837 34 H 0.118 0.882 35 H 0.417 0.583 36 H 0.052 0.948 37 H 0.036 0.964 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.076 0.924 41 H 0.031 0.969 42 H 0.045 0.955 43 H 0.372 0.628 44 H 0.248 0.752 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.637 -18.790 -11.047 30.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.246 6.246 3 C 0.096 3.904 4 C -0.203 4.203 5 C -0.097 4.097 6 C -0.151 4.151 7 C -0.077 4.077 8 C -0.274 4.274 9 C 0.370 3.630 10 O -0.467 6.467 11 N -0.357 5.357 12 C 0.011 3.989 13 C -0.154 4.154 14 C 0.054 3.946 15 H 0.060 0.940 16 C -0.212 4.212 17 N -0.376 5.376 18 C -0.362 4.362 19 H 0.092 0.908 20 C -0.273 4.273 21 N -0.621 5.621 22 Si 0.796 3.204 23 H -0.190 1.190 24 H -0.227 1.227 25 H -0.221 1.221 26 C 0.044 3.956 27 O -0.075 6.075 28 C -0.054 4.054 29 H 0.139 0.861 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.195 0.805 33 H 0.181 0.819 34 H 0.136 0.864 35 H 0.255 0.745 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.094 0.906 39 H 0.127 0.873 40 H 0.095 0.905 41 H 0.050 0.950 42 H 0.065 0.935 43 H 0.204 0.796 44 H 0.057 0.943 45 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -21.717 -18.281 -11.144 30.496 hybrid contribution 0.504 1.226 0.837 1.567 sum -21.213 -17.056 -10.307 29.106 Atomic orbital electron populations 1.23476 0.75445 1.06068 1.02935 1.86121 1.24270 1.25642 1.88576 1.17897 0.86230 0.86653 0.99592 1.21361 1.01595 0.89873 1.07444 1.21231 0.92995 0.98783 0.96654 1.20714 0.94370 0.97073 1.02937 1.19497 0.91797 0.93680 1.02687 1.20878 0.92333 0.94542 1.19604 1.17424 0.82659 0.87187 0.75684 1.90789 1.84535 1.19201 1.52156 1.45631 1.04255 1.11180 1.74597 1.21140 0.85931 0.91114 1.00747 1.21927 0.91190 0.97990 1.04244 1.20480 0.93673 0.92052 0.88409 0.93979 1.22254 0.97962 0.99731 1.01298 1.42664 1.70744 1.15150 1.09015 1.19641 1.28670 0.92572 0.95309 0.90769 1.25495 1.03422 1.02325 0.96039 1.69812 1.52526 1.38811 1.00984 0.85170 0.77165 0.80464 0.77623 1.18995 1.22681 1.22117 1.25423 0.88165 0.91062 0.90953 1.83900 1.13877 1.35253 1.74467 1.18835 0.88514 0.86303 1.11713 0.86138 0.91027 0.90875 0.80482 0.81926 0.86372 0.74547 0.92935 0.94534 0.90640 0.87271 0.90490 0.94985 0.93540 0.79634 0.94346 0.71257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.33 -6.02 10.50 -92.96 -0.98 -6.99 16 3 C 0.14 2.96 6.70 22.57 0.15 3.11 16 4 C -0.18 -2.97 9.02 22.38 0.20 -2.77 16 5 C -0.08 -1.50 10.03 22.27 0.22 -1.27 16 6 C -0.13 -3.61 9.88 22.41 0.22 -3.39 16 7 C -0.08 -2.13 6.29 -20.10 -0.13 -2.26 16 8 C -0.27 -7.11 6.31 -18.97 -0.12 -7.23 16 9 C 0.58 18.85 7.80 86.56 0.68 19.53 16 10 O -0.59 -25.30 16.28 -4.20 -0.07 -25.37 16 11 N -0.70 -18.19 5.55 -466.70 -2.59 -20.78 16 12 C 0.13 4.43 5.56 86.38 0.48 4.91 16 13 C -0.12 -3.14 4.87 30.60 0.15 -2.99 16 14 C 0.16 5.93 2.89 44.99 0.13 6.06 16 15 H 0.04 1.60 8.08 -2.39 -0.02 1.58 16 16 C -0.15 -4.87 9.49 71.98 0.68 -4.19 16 17 N -0.73 -36.26 4.57 -322.94 -1.48 -37.73 16 18 C -0.23 -12.84 9.93 84.03 0.83 -12.01 16 19 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 20 C -0.08 -4.76 5.50 84.86 0.47 -4.30 16 21 N -0.97 -60.89 13.06 21.65 0.28 -60.61 16 22 Si 0.97 47.73 29.55 68.60 2.03 49.76 16 23 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.30 -15.01 7.11 99.48 0.71 -14.31 16 25 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 26 C 0.11 1.93 11.52 67.32 0.78 2.71 16 27 O -0.18 -3.85 10.53 -4.05 -0.04 -3.89 16 28 C -0.01 -0.19 7.33 23.00 0.17 -0.02 16 29 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.07 0.36 7.66 -2.39 -0.02 0.34 16 31 H 0.07 0.34 7.66 -2.39 -0.02 0.32 16 32 H 0.18 1.41 6.26 -2.91 -0.02 1.39 16 33 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 34 H 0.12 3.67 7.53 -2.91 -0.02 3.65 16 35 H 0.42 6.41 7.40 -92.71 -0.69 5.73 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.04 1.59 7.75 -2.39 -0.02 1.57 16 38 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.03 1.14 8.14 -2.39 -0.02 1.13 16 42 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.37 19.86 7.80 -92.71 -0.72 19.14 16 44 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 45 H 0.27 1.20 7.41 -2.91 -0.02 1.17 16 Total: -1.00 -84.93 383.01 2.81 -82.12 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: -0.38 Total: 26.35 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: 6.03 Total: -2.87 kcal Atomic # 7 Polarization: -115.34 SS G_CDS: -3.78 Total: -119.12 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -1.09 Total: -36.25 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Total: -84.93 2.81 -82.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674188022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.547 kcal (2) G-P(sol) polarization free energy of solvation -84.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds