Wall clock time and date at job start Tue Mar 31 2020 18:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35973 * 116.99793 * 2 1 4 4 C 1.38260 * 120.11847 * 359.97438 * 3 2 1 5 5 C 1.38764 * 120.67512 * 180.02562 * 4 3 2 6 6 C 1.36629 * 120.49846 * 0.02562 * 5 4 3 7 7 C 1.39783 * 119.80957 * 359.95985 * 6 5 4 8 8 C 1.46249 * 134.15240 * 180.02562 * 7 6 5 9 9 C 1.35806 * 106.09309 * 180.02562 * 8 7 6 10 10 C 1.46988 * 125.14445 * 180.02562 * 9 8 7 11 11 O 1.21650 * 120.00269 * 0.27324 * 10 9 8 12 12 N 1.34784 * 119.99966 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99971 * 179.97438 * 12 10 9 14 14 H 1.09007 * 109.47230 * 34.99566 * 13 12 10 15 15 C 1.53001 * 109.47277 * 275.00026 * 13 12 10 16 16 C 1.52990 * 109.47333 * 154.99849 * 13 12 10 17 17 C 1.53000 * 109.47144 * 295.00253 * 16 13 12 18 18 N 1.46506 * 109.46938 * 179.97438 * 17 16 13 19 19 C 1.36941 * 119.99451 * 179.97438 * 18 17 16 20 20 H 1.07992 * 120.00600 * 0.02562 * 19 18 17 21 21 C 1.38818 * 119.99520 * 179.97438 * 19 18 17 22 22 N 1.31618 * 119.99921 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00171 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47031 * 89.99822 * 23 21 19 25 25 H 1.48500 * 109.47066 * 210.00391 * 23 21 19 26 26 H 1.48504 * 109.46846 * 330.00030 * 23 21 19 27 27 O 1.34938 * 109.71687 * 0.26389 * 9 8 7 28 28 C 1.34771 * 110.83838 * 359.55112 * 27 9 8 29 29 H 1.09001 * 109.47326 * 299.99974 * 1 2 3 30 30 H 1.08990 * 109.47286 * 60.00440 * 1 2 3 31 31 H 1.09001 * 109.46864 * 180.02562 * 1 2 3 32 32 H 1.07997 * 119.66236 * 0.04135 * 4 3 2 33 33 H 1.08004 * 119.75505 * 180.02562 * 5 4 3 34 34 H 1.07998 * 120.09516 * 180.02562 * 6 5 4 35 35 H 1.07999 * 126.95573 * 0.04381 * 8 7 6 36 36 H 0.96999 * 120.00044 * 0.02562 * 12 10 9 37 37 H 1.09000 * 109.47576 * 179.97438 * 15 13 12 38 38 H 1.08995 * 109.46954 * 300.00156 * 15 13 12 39 39 H 1.09005 * 109.47307 * 59.99945 * 15 13 12 40 40 H 1.09003 * 109.47330 * 55.00229 * 16 13 12 41 41 H 1.08999 * 109.47417 * 174.99813 * 16 13 12 42 42 H 1.08998 * 109.47016 * 299.99692 * 17 16 13 43 43 H 1.08993 * 109.47367 * 59.99969 * 17 16 13 44 44 H 0.96989 * 120.00320 * 359.97438 * 18 17 16 45 45 H 0.96995 * 120.00284 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2956 2.3726 -0.0005 5 6 1.9135 3.6151 -0.0011 6 6 3.2764 3.7118 -0.0016 7 6 4.0553 2.5511 -0.0008 8 6 5.4943 2.2900 -0.0005 9 6 5.6317 0.9389 -0.0002 10 6 6.9131 0.2187 0.0007 11 8 7.9595 0.8391 0.0062 12 7 6.9287 -1.1290 0.0005 13 6 8.2058 -1.8468 0.0008 14 1 8.9349 -1.2910 0.5906 15 6 8.7125 -1.9868 -1.4361 16 6 8.0097 -3.2364 0.6101 17 6 7.6233 -3.0971 2.0839 18 7 7.4350 -4.4278 2.6672 19 6 7.0837 -4.5543 3.9847 20 1 6.9450 -3.6733 4.5937 21 6 6.9047 -5.8151 4.5373 22 7 6.5665 -5.9368 5.8034 23 14 7.1437 -7.3391 3.4838 24 1 8.5601 -7.7781 3.5626 25 1 6.2603 -8.4258 3.9777 26 1 6.8006 -7.0248 2.0736 27 8 4.4141 0.3574 -0.0060 28 6 3.4387 1.2875 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.2173 2.3119 -0.0003 33 1 1.3126 4.5126 -0.0011 34 1 3.7504 4.6821 -0.0016 35 1 6.2873 3.0232 -0.0003 36 1 6.0943 -1.6237 -0.0006 37 1 9.6629 -2.5205 -1.4358 38 1 7.9836 -2.5425 -2.0258 39 1 8.8523 -0.9968 -1.8702 40 1 7.2174 -3.7594 0.0746 41 1 8.9376 -3.8026 0.5297 42 1 8.4156 -2.5741 2.6194 43 1 6.6954 -2.5309 2.1644 44 1 7.5591 -5.2191 2.1203 45 1 6.4418 -6.8177 6.1897 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716169732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:08 Heat of formation + Delta-G solvation = -29.771386 kcal Electronic energy + Delta-G solvation = -27658.215657 eV Core-core repulsion = 23643.208329 eV Total energy + Delta-G solvation = -4015.007329 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.77644 -40.06388 -39.53050 -37.26317 -36.74103 -34.55477 -32.68712 -32.15036 -31.14669 -30.49644 -29.49566 -28.29489 -27.66273 -24.75321 -23.73255 -23.11123 -21.82687 -21.39867 -20.95580 -20.61026 -18.78033 -18.09286 -17.70439 -17.39868 -16.81827 -16.37184 -15.92041 -15.82549 -15.41043 -14.97485 -14.63235 -14.45983 -14.12488 -13.96305 -13.71226 -13.60710 -13.37955 -13.22119 -12.75002 -12.67280 -12.60648 -12.56867 -12.09616 -11.83995 -11.68689 -11.63248 -11.53048 -11.26360 -10.91351 -10.76752 -10.54057 -10.37164 -10.14149 -10.12621 -9.58149 -9.24422 -8.92090 -8.87232 -8.19954 -7.22465 -5.75301 -3.11165 0.29530 0.99362 1.57620 2.17855 2.82212 2.97973 3.02411 3.32192 3.37774 3.40242 3.45569 4.14936 4.39612 4.41741 4.59957 4.63690 4.71248 4.80014 4.81886 4.91075 4.93445 5.00992 5.10796 5.17640 5.22330 5.28588 5.50223 5.59233 5.62771 5.70561 5.72497 5.76320 5.89108 5.91469 5.94006 6.07288 6.12119 6.17748 6.18777 6.33294 6.49838 6.71639 6.74574 7.00254 7.35971 7.93450 8.01201 8.43529 9.22584 9.94637 10.14373 11.43225 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010491 B = 0.002910 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.244597 B = 9619.728889 C =11341.714249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.310 6.310 3 C 0.145 3.855 4 C -0.186 4.186 5 C -0.097 4.097 6 C -0.101 4.101 7 C -0.103 4.103 8 C -0.123 4.123 9 C -0.011 4.011 10 C 0.600 3.400 11 O -0.517 6.517 12 N -0.704 5.704 13 C 0.144 3.856 14 H 0.095 0.905 15 C -0.162 4.162 16 C -0.140 4.140 17 C 0.156 3.844 18 N -0.757 5.757 19 C -0.244 4.244 20 H 0.089 0.911 21 C 0.003 3.997 22 N -0.935 5.935 23 Si 0.886 3.114 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 O -0.171 6.171 28 C 0.045 3.955 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.141 0.859 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.173 0.827 36 H 0.409 0.591 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.028 0.972 43 H 0.027 0.973 44 H 0.361 0.639 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.199 19.064 -18.357 28.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.223 6.223 3 C 0.099 3.901 4 C -0.205 4.205 5 C -0.115 4.115 6 C -0.119 4.119 7 C -0.104 4.104 8 C -0.144 4.144 9 C -0.062 4.062 10 C 0.385 3.615 11 O -0.394 6.394 12 N -0.354 5.354 13 C 0.040 3.960 14 H 0.113 0.887 15 C -0.220 4.220 16 C -0.178 4.178 17 C 0.029 3.971 18 N -0.402 5.402 19 C -0.374 4.374 20 H 0.107 0.893 21 C -0.192 4.192 22 N -0.583 5.583 23 Si 0.717 3.283 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.204 1.204 27 O -0.072 6.072 28 C -0.004 4.004 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.159 0.841 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.191 0.809 36 H 0.245 0.755 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.046 0.954 43 H 0.045 0.955 44 H 0.193 0.807 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.457 19.025 -18.110 27.917 hybrid contribution -0.632 -1.232 -0.536 1.485 sum -10.089 17.792 -18.646 27.677 Atomic orbital electron populations 1.23139 0.77717 1.04584 1.01418 1.86209 1.21846 1.25767 1.88461 1.17765 0.86628 0.85844 0.99848 1.21002 1.00074 0.91020 1.08445 1.20540 0.94230 0.97074 0.99663 1.20255 0.93083 0.96836 1.01735 1.19721 0.92755 0.92993 1.04972 1.22695 0.94537 0.94484 1.02644 1.22148 0.84035 0.92670 1.07353 1.16625 0.85246 0.82406 0.77235 1.90878 1.30216 1.67580 1.50756 1.46079 1.10930 1.05483 1.72915 1.21087 0.84915 0.93009 0.97006 0.88675 1.22179 1.01536 1.02320 0.96006 1.22129 1.03039 0.94871 0.97767 1.20634 0.98182 0.88443 0.89843 1.42702 1.85544 1.01903 1.10091 1.19072 1.38904 0.94325 0.85109 0.89280 1.24688 1.01615 0.97091 0.95855 1.69705 1.54175 1.22750 1.11641 0.86515 0.77770 0.84048 0.79990 1.21068 1.21741 1.20351 1.84102 1.12714 1.34761 1.75639 1.18824 0.87529 0.87139 1.06916 0.92272 0.92440 0.87753 0.84097 0.84824 0.84902 0.80925 0.75489 0.91195 0.92359 0.92150 0.91227 0.89940 0.95400 0.95533 0.80692 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.57 10.50 -19.66 -0.21 -3.77 16 3 C 0.14 1.66 6.70 -39.12 -0.26 1.40 16 4 C -0.19 -1.56 9.03 -39.38 -0.36 -1.91 16 5 C -0.10 -0.73 9.97 -39.97 -0.40 -1.13 16 6 C -0.10 -0.88 10.06 -39.59 -0.40 -1.28 16 7 C -0.10 -1.19 6.38 -105.21 -0.67 -1.86 16 8 C -0.12 -1.46 10.81 -37.24 -0.40 -1.87 16 9 C -0.01 -0.15 7.07 -36.91 -0.26 -0.42 16 10 C 0.60 8.57 7.76 -12.71 -0.10 8.48 16 11 O -0.52 -8.40 16.49 5.23 0.09 -8.31 16 12 N -0.70 -9.29 4.53 -55.02 -0.25 -9.54 16 13 C 0.14 1.86 2.58 -67.94 -0.18 1.68 16 14 H 0.10 1.34 7.57 -51.93 -0.39 0.95 16 15 C -0.16 -1.76 9.48 37.16 0.35 -1.40 16 16 C -0.14 -2.02 4.87 -26.74 -0.13 -2.15 16 17 C 0.16 3.05 6.15 -4.04 -0.02 3.02 16 18 N -0.76 -18.30 5.41 -59.91 -0.32 -18.63 16 19 C -0.24 -7.11 10.47 -15.06 -0.16 -7.26 16 20 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 21 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 22 N -0.93 -29.88 13.97 55.49 0.78 -29.11 16 23 Si 0.89 22.31 27.74 -169.99 -4.71 17.60 16 24 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 26 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 27 O -0.17 -2.43 10.28 2.64 0.03 -2.41 16 28 C 0.04 0.59 7.35 -38.24 -0.28 0.31 16 29 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 30 H 0.06 0.27 7.66 -51.93 -0.40 -0.12 16 31 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.14 0.77 6.26 -52.49 -0.33 0.44 16 33 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.17 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.41 5.14 8.32 -40.82 -0.34 4.80 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.03 0.54 7.75 -51.93 -0.40 0.13 16 44 H 0.36 8.38 5.53 -40.82 -0.23 8.15 16 45 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 381.91 15.07 5.76 5.76 Total: -1.00 -35.69 381.91 -7.52 -43.21 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.30 Total: 8.43 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -2.37 Total: -3.23 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.20 Total: -57.27 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.09 Total: -14.49 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.60 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.69 -7.52 -43.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716169732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.442 kcal (2) G-P(sol) polarization free energy of solvation -35.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds