Wall clock time and date at job start Tue Mar 31 2020 18:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35973 * 116.99793 * 2 1 4 4 C 1.38260 * 120.11847 * 359.97438 * 3 2 1 5 5 C 1.38764 * 120.67512 * 180.02562 * 4 3 2 6 6 C 1.36629 * 120.49846 * 0.02562 * 5 4 3 7 7 C 1.39783 * 119.80957 * 359.95985 * 6 5 4 8 8 C 1.46249 * 134.15240 * 180.02562 * 7 6 5 9 9 C 1.35806 * 106.09309 * 180.02562 * 8 7 6 10 10 C 1.46988 * 125.14445 * 180.02562 * 9 8 7 11 11 O 1.21650 * 120.00269 * 0.27324 * 10 9 8 12 12 N 1.34784 * 119.99966 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99971 * 179.97438 * 12 10 9 14 14 H 1.09007 * 109.47230 * 34.99566 * 13 12 10 15 15 C 1.53001 * 109.47277 * 275.00026 * 13 12 10 16 16 C 1.52990 * 109.47333 * 154.99849 * 13 12 10 17 17 C 1.53000 * 109.47144 * 295.00253 * 16 13 12 18 18 N 1.46506 * 109.46938 * 179.97438 * 17 16 13 19 19 C 1.36941 * 119.99451 * 179.97438 * 18 17 16 20 20 H 1.07992 * 120.00600 * 0.02562 * 19 18 17 21 21 C 1.38818 * 119.99520 * 179.97438 * 19 18 17 22 22 N 1.31618 * 119.99921 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00171 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47031 * 89.99822 * 23 21 19 25 25 H 1.48500 * 109.47066 * 210.00391 * 23 21 19 26 26 H 1.48504 * 109.46846 * 330.00030 * 23 21 19 27 27 O 1.34938 * 109.71687 * 0.26389 * 9 8 7 28 28 C 1.34771 * 110.83838 * 359.55112 * 27 9 8 29 29 H 1.09001 * 109.47326 * 299.99974 * 1 2 3 30 30 H 1.08990 * 109.47286 * 60.00440 * 1 2 3 31 31 H 1.09001 * 109.46864 * 180.02562 * 1 2 3 32 32 H 1.07997 * 119.66236 * 0.04135 * 4 3 2 33 33 H 1.08004 * 119.75505 * 180.02562 * 5 4 3 34 34 H 1.07998 * 120.09516 * 180.02562 * 6 5 4 35 35 H 1.07999 * 126.95573 * 0.04381 * 8 7 6 36 36 H 0.96999 * 120.00044 * 0.02562 * 12 10 9 37 37 H 1.09000 * 109.47576 * 179.97438 * 15 13 12 38 38 H 1.08995 * 109.46954 * 300.00156 * 15 13 12 39 39 H 1.09005 * 109.47307 * 59.99945 * 15 13 12 40 40 H 1.09003 * 109.47330 * 55.00229 * 16 13 12 41 41 H 1.08999 * 109.47417 * 174.99813 * 16 13 12 42 42 H 1.08998 * 109.47016 * 299.99692 * 17 16 13 43 43 H 1.08993 * 109.47367 * 59.99969 * 17 16 13 44 44 H 0.96989 * 120.00320 * 359.97438 * 18 17 16 45 45 H 0.96995 * 120.00284 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2956 2.3726 -0.0005 5 6 1.9135 3.6151 -0.0011 6 6 3.2764 3.7118 -0.0016 7 6 4.0553 2.5511 -0.0008 8 6 5.4943 2.2900 -0.0005 9 6 5.6317 0.9389 -0.0002 10 6 6.9131 0.2187 0.0007 11 8 7.9595 0.8391 0.0062 12 7 6.9287 -1.1290 0.0005 13 6 8.2058 -1.8468 0.0008 14 1 8.9349 -1.2910 0.5906 15 6 8.7125 -1.9868 -1.4361 16 6 8.0097 -3.2364 0.6101 17 6 7.6233 -3.0971 2.0839 18 7 7.4350 -4.4278 2.6672 19 6 7.0837 -4.5543 3.9847 20 1 6.9450 -3.6733 4.5937 21 6 6.9047 -5.8151 4.5373 22 7 6.5665 -5.9368 5.8034 23 14 7.1437 -7.3391 3.4838 24 1 8.5601 -7.7781 3.5626 25 1 6.2603 -8.4258 3.9777 26 1 6.8006 -7.0248 2.0736 27 8 4.4141 0.3574 -0.0060 28 6 3.4387 1.2875 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.2173 2.3119 -0.0003 33 1 1.3126 4.5126 -0.0011 34 1 3.7504 4.6821 -0.0016 35 1 6.2873 3.0232 -0.0003 36 1 6.0943 -1.6237 -0.0006 37 1 9.6629 -2.5205 -1.4358 38 1 7.9836 -2.5425 -2.0258 39 1 8.8523 -0.9968 -1.8702 40 1 7.2174 -3.7594 0.0746 41 1 8.9376 -3.8026 0.5297 42 1 8.4156 -2.5741 2.6194 43 1 6.6954 -2.5309 2.1644 44 1 7.5591 -5.2191 2.1203 45 1 6.4418 -6.8177 6.1897 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716169732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:07 Heat of formation + Delta-G solvation = -55.011077 kcal Electronic energy + Delta-G solvation = -27659.310132 eV Core-core repulsion = 23643.208329 eV Total energy + Delta-G solvation = -4016.101804 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.65348 -41.02829 -40.39741 -38.06391 -37.98558 -36.29907 -33.85703 -33.55931 -32.65079 -31.30606 -30.34673 -29.73635 -28.24419 -25.94732 -25.23452 -23.90574 -23.19353 -22.58365 -22.07469 -21.66604 -19.89470 -19.49605 -18.91148 -18.33626 -17.73694 -17.47645 -16.76033 -16.59030 -16.54116 -16.07116 -16.01568 -15.73454 -15.61866 -15.26445 -14.86840 -14.65283 -14.44641 -14.34290 -14.09461 -13.94326 -13.39566 -13.32313 -13.26993 -13.01120 -12.97751 -12.51383 -12.45080 -12.28115 -12.26157 -12.23757 -12.03660 -11.88967 -11.77759 -11.51926 -11.00983 -10.96477 -10.31933 -9.75361 -9.34626 -8.95310 -8.05758 -5.40985 -0.56936 0.24990 0.70160 1.28772 1.36792 1.42143 1.49386 1.93370 1.99706 2.19974 2.47000 2.60151 3.24321 3.25367 3.41345 3.62223 3.80793 3.89799 3.96213 4.00840 4.07306 4.21074 4.24226 4.27334 4.36354 4.38971 4.49919 4.54086 4.55348 4.71483 4.73169 4.79344 4.93185 4.94908 5.04144 5.10549 5.20724 5.22523 5.28843 5.36708 5.39133 5.52402 5.69849 5.70994 6.17789 6.24210 6.35643 6.85074 7.04505 7.78558 8.00772 9.16039 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010491 B = 0.002910 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.244597 B = 9619.728889 C =11341.714249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.343 6.343 3 C 0.118 3.882 4 C -0.172 4.172 5 C -0.089 4.089 6 C -0.101 4.101 7 C -0.119 4.119 8 C -0.112 4.112 9 C -0.041 4.041 10 C 0.601 3.399 11 O -0.543 6.543 12 N -0.702 5.702 13 C 0.147 3.853 14 H 0.081 0.919 15 C -0.153 4.153 16 C -0.124 4.124 17 C 0.153 3.847 18 N -0.757 5.757 19 C -0.244 4.244 20 H 0.048 0.952 21 C -0.066 4.066 22 N -0.985 5.985 23 Si 0.964 3.036 24 H -0.275 1.275 25 H -0.295 1.295 26 H -0.246 1.246 27 O -0.192 6.192 28 C 0.009 3.991 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.173 0.827 33 H 0.175 0.825 34 H 0.161 0.839 35 H 0.189 0.811 36 H 0.412 0.588 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.369 0.631 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.289 19.749 -20.884 30.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.257 6.257 3 C 0.072 3.928 4 C -0.190 4.190 5 C -0.107 4.107 6 C -0.119 4.119 7 C -0.120 4.120 8 C -0.133 4.133 9 C -0.091 4.091 10 C 0.387 3.613 11 O -0.423 6.423 12 N -0.352 5.352 13 C 0.043 3.957 14 H 0.099 0.901 15 C -0.211 4.211 16 C -0.162 4.162 17 C 0.027 3.973 18 N -0.403 5.403 19 C -0.375 4.375 20 H 0.066 0.934 21 C -0.257 4.257 22 N -0.635 5.635 23 Si 0.790 3.210 24 H -0.201 1.201 25 H -0.221 1.221 26 H -0.170 1.170 27 O -0.095 6.095 28 C -0.039 4.039 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.130 0.870 32 H 0.190 0.810 33 H 0.192 0.808 34 H 0.178 0.822 35 H 0.206 0.794 36 H 0.248 0.752 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.102 0.898 41 H 0.118 0.882 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.203 0.797 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.550 19.733 -20.683 30.471 hybrid contribution -0.446 -1.259 0.328 1.376 sum -10.996 18.474 -20.355 29.606 Atomic orbital electron populations 1.23431 0.75545 1.05742 1.03003 1.86156 1.24273 1.26439 1.88832 1.18132 0.86342 0.86917 1.01385 1.21490 1.01532 0.90265 1.05745 1.21062 0.94046 0.98143 0.97458 1.20695 0.93727 0.96950 1.00539 1.19987 0.92468 0.93611 1.05965 1.23009 0.95499 0.94165 1.00593 1.22057 0.83829 0.93288 1.09939 1.16726 0.85342 0.82572 0.76699 1.90844 1.31137 1.68073 1.52287 1.46105 1.11228 1.05346 1.72473 1.21070 0.84506 0.91777 0.98359 0.90076 1.22103 1.02601 1.02384 0.94042 1.21999 1.04209 0.96131 0.93851 1.20763 0.97321 0.86132 0.93075 1.42651 1.85229 1.03993 1.08411 1.19018 1.38308 0.93154 0.86976 0.93433 1.25634 1.01720 1.00996 0.97370 1.69906 1.55890 1.23661 1.14086 0.85283 0.77852 0.78513 0.79357 1.20069 1.22128 1.17047 1.84034 1.13114 1.35715 1.76607 1.19432 0.88358 0.87723 1.08355 0.90974 0.90385 0.87034 0.80955 0.80804 0.82180 0.79419 0.75210 0.89450 0.91182 0.92864 0.89827 0.88229 0.96564 0.96551 0.79677 0.93183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -7.98 10.50 -93.24 -0.98 -8.96 16 3 C 0.12 2.67 6.70 22.57 0.15 2.82 16 4 C -0.17 -2.43 9.03 22.40 0.20 -2.23 16 5 C -0.09 -1.03 9.97 22.02 0.22 -0.81 16 6 C -0.10 -1.53 10.06 22.27 0.22 -1.31 16 7 C -0.12 -2.73 6.38 -20.24 -0.13 -2.86 16 8 C -0.11 -2.74 10.81 23.79 0.26 -2.48 16 9 C -0.04 -1.18 7.07 24.00 0.17 -1.01 16 10 C 0.60 17.95 7.76 86.53 0.67 18.63 16 11 O -0.54 -18.29 16.49 -4.19 -0.07 -18.36 16 12 N -0.70 -18.98 4.53 -446.22 -2.02 -20.99 16 13 C 0.15 3.71 2.58 44.99 0.12 3.83 16 14 H 0.08 2.31 7.57 -2.38 -0.02 2.29 16 15 C -0.15 -3.05 9.48 71.98 0.68 -2.37 16 16 C -0.12 -3.39 4.87 30.59 0.15 -3.24 16 17 C 0.15 6.03 6.15 86.38 0.53 6.56 16 18 N -0.76 -36.32 5.41 -343.45 -1.86 -38.18 16 19 C -0.24 -14.54 10.47 84.03 0.88 -13.66 16 20 H 0.05 3.16 8.06 -2.91 -0.02 3.13 16 21 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 22 N -0.99 -64.77 13.97 21.65 0.30 -64.47 16 23 Si 0.96 45.72 27.74 68.60 1.90 47.62 16 24 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 25 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 26 H -0.25 -10.32 6.52 99.48 0.65 -9.67 16 27 O -0.19 -5.86 10.28 -13.46 -0.14 -6.00 16 28 C 0.01 0.25 7.35 23.14 0.17 0.42 16 29 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 30 H 0.08 0.57 7.66 -2.39 -0.02 0.55 16 31 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.17 1.23 6.26 -2.91 -0.02 1.21 16 33 H 0.17 0.62 8.06 -2.91 -0.02 0.60 16 34 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 35 H 0.19 3.75 8.06 -2.91 -0.02 3.73 16 36 H 0.41 10.69 8.32 -92.71 -0.77 9.92 16 37 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.02 0.68 7.75 -2.39 -0.02 0.66 16 44 H 0.37 16.34 5.53 -92.72 -0.51 15.83 16 45 H 0.26 16.11 8.31 -92.71 -0.77 15.33 16 Total: -1.00 -81.54 381.91 2.70 -78.84 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: -0.31 Total: 30.41 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 5.87 Total: 0.09 kcal Atomic # 7 Polarization: -120.06 SS G_CDS: -3.57 Total: -123.64 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -1.19 Total: -33.32 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.90 Total: 47.62 kcal Total: -81.54 2.70 -78.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716169732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.831 kcal (2) G-P(sol) polarization free energy of solvation -81.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds