Wall clock time and date at job start Tue Mar 31 2020 18:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35963 * 116.99785 * 2 1 4 4 C 1.38264 * 120.12402 * 359.97438 * 3 2 1 5 5 C 1.38767 * 120.67917 * 180.02562 * 4 3 2 6 6 C 1.36638 * 120.49360 * 0.03984 * 5 4 3 7 7 C 1.39777 * 119.81349 * 359.95935 * 6 5 4 8 8 C 1.46251 * 134.15125 * 180.02562 * 7 6 5 9 9 C 1.35807 * 106.09064 * 180.02562 * 8 7 6 10 10 C 1.46985 * 125.14448 * 179.97438 * 9 8 7 11 11 O 1.21660 * 120.00089 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00406 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00174 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.46697 * 34.99787 * 13 12 10 15 15 C 1.53005 * 109.46829 * 274.99898 * 13 12 10 16 16 C 1.52999 * 109.46795 * 155.00104 * 13 12 10 17 17 H 1.08996 * 109.46929 * 294.99191 * 16 13 12 18 18 C 1.52997 * 109.47317 * 55.00087 * 16 13 12 19 19 N 1.46506 * 109.46684 * 175.00143 * 16 13 12 20 20 C 1.36929 * 119.99904 * 154.99978 * 19 16 13 21 21 H 1.08004 * 120.00323 * 359.97438 * 20 19 16 22 22 C 1.38815 * 119.99984 * 179.97438 * 20 19 16 23 23 N 1.31615 * 120.00318 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00100 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47064 * 89.99896 * 24 22 20 26 26 H 1.48501 * 109.47532 * 210.00413 * 24 22 20 27 27 H 1.48506 * 109.47200 * 330.00329 * 24 22 20 28 28 O 1.34933 * 109.71653 * 0.24717 * 9 8 7 29 29 C 1.34773 * 110.84218 * 359.58022 * 28 9 8 30 30 H 1.09010 * 109.47019 * 59.99915 * 1 2 3 31 31 H 1.09000 * 109.47121 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47734 * 300.00644 * 1 2 3 33 33 H 1.07999 * 119.65988 * 0.02562 * 4 3 2 34 34 H 1.08000 * 119.75599 * 180.02562 * 5 4 3 35 35 H 1.07997 * 120.08722 * 179.97438 * 6 5 4 36 36 H 1.08001 * 126.95666 * 0.04099 * 8 7 6 37 37 H 0.97000 * 119.99717 * 359.97438 * 12 10 9 38 38 H 1.09001 * 109.46897 * 60.00279 * 15 13 12 39 39 H 1.08997 * 109.46584 * 179.97438 * 15 13 12 40 40 H 1.08999 * 109.47123 * 299.99923 * 15 13 12 41 41 H 1.09002 * 109.47153 * 299.99641 * 18 16 13 42 42 H 1.09001 * 109.46832 * 179.97438 * 18 16 13 43 43 H 1.09004 * 109.47261 * 59.99813 * 18 16 13 44 44 H 0.97000 * 120.00117 * 334.99772 * 19 16 13 45 45 H 0.96990 * 120.00689 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2956 2.3726 -0.0005 5 6 1.9135 3.6151 -0.0011 6 6 3.2765 3.7117 -0.0019 7 6 4.0554 2.5510 -0.0014 8 6 5.4944 2.2898 -0.0015 9 6 5.6317 0.9387 -0.0013 10 6 6.9130 0.2185 -0.0018 11 8 7.9596 0.8389 -0.0020 12 7 6.9286 -1.1292 -0.0021 13 6 8.2058 -1.8470 -0.0032 14 1 8.9353 -1.2913 0.5858 15 6 8.7108 -1.9870 -1.4407 16 6 8.0102 -3.2367 0.6063 17 1 7.7362 -3.1374 1.6566 18 6 6.8971 -3.9707 -0.1441 19 7 9.2572 -3.9978 0.4969 20 6 9.5170 -5.0162 1.3745 21 1 8.8028 -5.2583 2.1476 22 6 10.6983 -5.7377 1.2704 23 7 11.5690 -5.4426 0.3286 24 14 11.0530 -7.1267 2.4681 25 1 10.5182 -8.3999 1.9220 26 1 12.5200 -7.2494 2.6636 27 1 10.4028 -6.8351 3.7710 28 8 4.4140 0.3574 -0.0065 29 6 3.4386 1.2874 -0.0011 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.2173 2.3120 -0.0005 34 1 1.3127 4.5126 -0.0011 35 1 3.7505 4.6820 -0.0027 36 1 6.2874 3.0230 -0.0014 37 1 6.0942 -1.6239 -0.0015 38 1 8.8501 -0.9970 -1.8749 39 1 9.6612 -2.5207 -1.4414 40 1 7.9811 -2.5428 -2.0296 41 1 5.9693 -3.4045 -0.0627 42 1 6.7582 -4.9609 0.2899 43 1 7.1712 -4.0699 -1.1945 44 1 9.8989 -3.7802 -0.1973 45 1 12.3946 -5.9464 0.2561 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725112339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:41 Heat of formation + Delta-G solvation = -24.594270 kcal Electronic energy + Delta-G solvation = -27831.083498 eV Core-core repulsion = 23816.300666 eV Total energy + Delta-G solvation = -4014.782832 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.78564 -40.04573 -39.48559 -37.30278 -36.98650 -34.01274 -32.68826 -31.93207 -30.75296 -29.88513 -29.09881 -28.20579 -27.70712 -24.86002 -24.21157 -23.18332 -22.76933 -21.69213 -20.63209 -19.30713 -18.68854 -18.08959 -17.69049 -17.28604 -16.83006 -15.99641 -15.88810 -15.71516 -15.40708 -14.90854 -14.60417 -14.48944 -14.13259 -13.85129 -13.67540 -13.47552 -13.27614 -12.84919 -12.73013 -12.66942 -12.45347 -11.99307 -11.87077 -11.74325 -11.68513 -11.65297 -11.30545 -10.95573 -10.83559 -10.52826 -10.29875 -10.21878 -10.13978 -9.99008 -9.67028 -9.06709 -8.94478 -8.85003 -8.22917 -7.01153 -5.78555 -3.08153 0.29500 0.96007 1.59274 2.18053 2.76681 3.09383 3.12462 3.29421 3.43419 3.48814 3.50336 4.19547 4.36644 4.38442 4.58724 4.60138 4.73146 4.75780 4.87697 4.93779 5.00121 5.08912 5.28056 5.31920 5.45047 5.62150 5.63244 5.68094 5.71747 5.79953 5.92588 6.03699 6.04820 6.12843 6.15463 6.27658 6.36664 6.41840 6.46225 6.61001 6.71321 6.84535 6.96971 7.06952 7.52657 7.68908 8.09447 8.39772 9.51217 10.05859 10.41061 11.44020 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019518 B = 0.002348 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.224218 B =11924.207294 C =12887.687024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C 0.144 3.856 4 C -0.187 4.187 5 C -0.098 4.098 6 C -0.100 4.100 7 C -0.102 4.102 8 C -0.126 4.126 9 C -0.007 4.007 10 C 0.594 3.406 11 O -0.514 6.514 12 N -0.702 5.702 13 C 0.134 3.866 14 H 0.093 0.907 15 C -0.160 4.160 16 C 0.168 3.832 17 H 0.053 0.947 18 C -0.170 4.170 19 N -0.719 5.719 20 C -0.241 4.241 21 H 0.071 0.929 22 C -0.012 4.012 23 N -0.931 5.931 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 O -0.173 6.173 29 C 0.042 3.958 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.141 0.859 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.174 0.826 37 H 0.405 0.595 38 H 0.052 0.948 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.034 0.966 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.387 0.613 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.254 18.256 -2.769 30.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.098 3.902 4 C -0.206 4.206 5 C -0.116 4.116 6 C -0.118 4.118 7 C -0.103 4.103 8 C -0.147 4.147 9 C -0.058 4.058 10 C 0.378 3.622 11 O -0.391 6.391 12 N -0.353 5.353 13 C 0.029 3.971 14 H 0.111 0.889 15 C -0.219 4.219 16 C 0.057 3.943 17 H 0.071 0.929 18 C -0.230 4.230 19 N -0.362 5.362 20 C -0.372 4.372 21 H 0.089 0.911 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 O -0.074 6.074 29 C -0.006 4.006 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.076 0.924 33 H 0.158 0.842 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.191 0.809 37 H 0.242 0.758 38 H 0.071 0.929 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.052 0.948 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.223 0.777 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -23.413 18.025 -2.625 29.664 hybrid contribution -0.295 -0.792 0.371 0.923 sum -23.708 17.233 -2.254 29.396 Atomic orbital electron populations 1.23130 0.77795 1.04481 1.01448 1.86190 1.21775 1.25869 1.88574 1.17744 0.86594 0.85765 1.00087 1.20990 1.00016 0.91042 1.08567 1.20539 0.94228 0.97065 0.99743 1.20269 0.93078 0.96889 1.01606 1.19735 0.92814 0.92978 1.04787 1.22709 0.94477 0.94564 1.02931 1.22297 0.83958 0.92738 1.06806 1.16685 0.85123 0.82635 0.77771 1.90898 1.30071 1.67556 1.50611 1.46244 1.11296 1.05260 1.72535 1.21490 0.83812 0.93810 0.97939 0.88906 1.22159 1.02484 1.01560 0.95663 1.20359 0.88809 0.88025 0.97076 0.92870 1.22550 0.97577 1.01286 1.01622 1.42443 1.17901 1.37809 1.38070 1.19222 1.01937 1.07673 1.08335 0.91098 1.24744 0.97010 1.00059 0.98987 1.69649 1.10545 1.43055 1.34703 0.86179 0.77188 0.82225 0.80506 1.21730 1.21759 1.20757 1.84094 1.12780 1.34802 1.75707 1.18828 0.87519 0.87212 1.07080 0.92390 0.87822 0.92366 0.84155 0.84842 0.84887 0.80888 0.75779 0.92933 0.90159 0.92330 0.94764 0.92234 0.92719 0.77743 0.93422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.21 10.50 -19.62 -0.21 -3.42 16 3 C 0.14 1.52 6.70 -39.12 -0.26 1.26 16 4 C -0.19 -1.43 9.03 -39.38 -0.36 -1.78 16 5 C -0.10 -0.68 9.97 -39.96 -0.40 -1.08 16 6 C -0.10 -0.84 10.06 -39.58 -0.40 -1.24 16 7 C -0.10 -1.15 6.38 -105.21 -0.67 -1.82 16 8 C -0.13 -1.52 10.81 -37.24 -0.40 -1.93 16 9 C -0.01 -0.10 7.07 -36.91 -0.26 -0.36 16 10 C 0.59 9.30 7.76 -12.72 -0.10 9.20 16 11 O -0.51 -9.37 16.49 5.22 0.09 -9.28 16 12 N -0.70 -10.61 4.98 -55.01 -0.27 -10.89 16 13 C 0.13 2.34 2.62 -67.93 -0.18 2.16 16 14 H 0.09 1.81 7.58 -51.93 -0.39 1.41 16 15 C -0.16 -2.73 9.00 37.16 0.33 -2.39 16 16 C 0.17 3.28 2.93 -67.93 -0.20 3.08 16 17 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 18 C -0.17 -2.94 9.01 37.16 0.33 -2.61 16 19 N -0.72 -17.60 5.03 -53.43 -0.27 -17.87 16 20 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 21 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 22 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 23 N -0.93 -27.86 13.06 55.49 0.72 -27.13 16 24 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 O -0.17 -2.39 10.28 2.65 0.03 -2.36 16 29 C 0.04 0.53 7.35 -38.24 -0.28 0.25 16 30 H 0.06 0.23 7.66 -51.92 -0.40 -0.17 16 31 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 33 H 0.14 0.66 6.26 -52.49 -0.33 0.33 16 34 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 35 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.17 1.80 8.06 -52.49 -0.42 1.37 16 37 H 0.41 5.51 6.29 -40.82 -0.26 5.26 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.50 6.29 -51.93 -0.33 1.18 16 40 H 0.06 0.93 6.56 -51.93 -0.34 0.59 16 41 H 0.03 0.48 6.29 -51.93 -0.33 0.16 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.95 6.57 -51.93 -0.34 0.61 16 44 H 0.39 9.96 5.77 -40.82 -0.24 9.72 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 374.89 15.07 5.65 5.65 Total: -1.00 -32.86 374.89 -7.22 -40.08 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -5.85 Total: 11.24 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -2.09 Total: -3.30 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: 0.18 Total: -55.89 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.09 Total: -15.06 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.86 -7.22 -40.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725112339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.487 kcal (2) G-P(sol) polarization free energy of solvation -32.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds