Wall clock time and date at job start Tue Mar 31 2020 18:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35963 * 116.99785 * 2 1 4 4 C 1.38264 * 120.12402 * 359.97438 * 3 2 1 5 5 C 1.38767 * 120.67917 * 180.02562 * 4 3 2 6 6 C 1.36638 * 120.49360 * 0.03984 * 5 4 3 7 7 C 1.39777 * 119.81349 * 359.95935 * 6 5 4 8 8 C 1.46251 * 134.15125 * 180.02562 * 7 6 5 9 9 C 1.35807 * 106.09064 * 180.02562 * 8 7 6 10 10 C 1.46985 * 125.14448 * 179.97438 * 9 8 7 11 11 O 1.21660 * 120.00089 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00406 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00174 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.46697 * 34.99787 * 13 12 10 15 15 C 1.53005 * 109.46829 * 274.99898 * 13 12 10 16 16 C 1.52999 * 109.46795 * 155.00104 * 13 12 10 17 17 H 1.08996 * 109.46929 * 294.99191 * 16 13 12 18 18 C 1.52997 * 109.47317 * 55.00087 * 16 13 12 19 19 N 1.46506 * 109.46684 * 175.00143 * 16 13 12 20 20 C 1.36929 * 119.99904 * 154.99978 * 19 16 13 21 21 H 1.08004 * 120.00323 * 359.97438 * 20 19 16 22 22 C 1.38815 * 119.99984 * 179.97438 * 20 19 16 23 23 N 1.31615 * 120.00318 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00100 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47064 * 89.99896 * 24 22 20 26 26 H 1.48501 * 109.47532 * 210.00413 * 24 22 20 27 27 H 1.48506 * 109.47200 * 330.00329 * 24 22 20 28 28 O 1.34933 * 109.71653 * 0.24717 * 9 8 7 29 29 C 1.34773 * 110.84218 * 359.58022 * 28 9 8 30 30 H 1.09010 * 109.47019 * 59.99915 * 1 2 3 31 31 H 1.09000 * 109.47121 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47734 * 300.00644 * 1 2 3 33 33 H 1.07999 * 119.65988 * 0.02562 * 4 3 2 34 34 H 1.08000 * 119.75599 * 180.02562 * 5 4 3 35 35 H 1.07997 * 120.08722 * 179.97438 * 6 5 4 36 36 H 1.08001 * 126.95666 * 0.04099 * 8 7 6 37 37 H 0.97000 * 119.99717 * 359.97438 * 12 10 9 38 38 H 1.09001 * 109.46897 * 60.00279 * 15 13 12 39 39 H 1.08997 * 109.46584 * 179.97438 * 15 13 12 40 40 H 1.08999 * 109.47123 * 299.99923 * 15 13 12 41 41 H 1.09002 * 109.47153 * 299.99641 * 18 16 13 42 42 H 1.09001 * 109.46832 * 179.97438 * 18 16 13 43 43 H 1.09004 * 109.47261 * 59.99813 * 18 16 13 44 44 H 0.97000 * 120.00117 * 334.99772 * 19 16 13 45 45 H 0.96990 * 120.00689 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2956 2.3726 -0.0005 5 6 1.9135 3.6151 -0.0011 6 6 3.2765 3.7117 -0.0019 7 6 4.0554 2.5510 -0.0014 8 6 5.4944 2.2898 -0.0015 9 6 5.6317 0.9387 -0.0013 10 6 6.9130 0.2185 -0.0018 11 8 7.9596 0.8389 -0.0020 12 7 6.9286 -1.1292 -0.0021 13 6 8.2058 -1.8470 -0.0032 14 1 8.9353 -1.2913 0.5858 15 6 8.7108 -1.9870 -1.4407 16 6 8.0102 -3.2367 0.6063 17 1 7.7362 -3.1374 1.6566 18 6 6.8971 -3.9707 -0.1441 19 7 9.2572 -3.9978 0.4969 20 6 9.5170 -5.0162 1.3745 21 1 8.8028 -5.2583 2.1476 22 6 10.6983 -5.7377 1.2704 23 7 11.5690 -5.4426 0.3286 24 14 11.0530 -7.1267 2.4681 25 1 10.5182 -8.3999 1.9220 26 1 12.5200 -7.2494 2.6636 27 1 10.4028 -6.8351 3.7710 28 8 4.4140 0.3574 -0.0065 29 6 3.4386 1.2874 -0.0011 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.2173 2.3120 -0.0005 34 1 1.3127 4.5126 -0.0011 35 1 3.7505 4.6820 -0.0027 36 1 6.2874 3.0230 -0.0014 37 1 6.0942 -1.6239 -0.0015 38 1 8.8501 -0.9970 -1.8749 39 1 9.6612 -2.5207 -1.4414 40 1 7.9811 -2.5428 -2.0296 41 1 5.9693 -3.4045 -0.0627 42 1 6.7582 -4.9609 0.2899 43 1 7.1712 -4.0699 -1.1945 44 1 9.8989 -3.7802 -0.1973 45 1 12.3946 -5.9464 0.2561 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725112339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:40 Heat of formation + Delta-G solvation = -46.690943 kcal Electronic energy + Delta-G solvation = -27832.041682 eV Core-core repulsion = 23816.300666 eV Total energy + Delta-G solvation = -4015.741016 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.64730 -41.09051 -40.40205 -38.53028 -37.96677 -35.71949 -33.68516 -33.54979 -31.70615 -31.00684 -30.19312 -29.83614 -28.21632 -26.23738 -25.84302 -24.27987 -23.84778 -22.49177 -21.76134 -20.77635 -19.77234 -19.36504 -18.90013 -18.32157 -17.71509 -17.13162 -16.74604 -16.62291 -16.51140 -16.11239 -15.98206 -15.91373 -15.44193 -15.23198 -14.84315 -14.55009 -14.38600 -14.09546 -13.99119 -13.56698 -13.32047 -13.24340 -13.14463 -13.01068 -12.81701 -12.69383 -12.49474 -12.25377 -12.23931 -12.14273 -12.09423 -11.72176 -11.67290 -11.48945 -10.96866 -10.95345 -10.33017 -9.74249 -9.05055 -8.93637 -7.94089 -5.23257 -0.56138 0.26717 0.71229 1.26489 1.48143 1.49530 1.57810 1.93092 1.94806 2.21509 2.57311 2.61826 3.25279 3.39271 3.63473 3.78655 3.83579 3.91288 3.93452 4.02340 4.06316 4.24505 4.28047 4.29171 4.39523 4.42172 4.55037 4.55701 4.64482 4.76453 4.80693 4.90391 4.93789 4.95643 5.05821 5.16133 5.18573 5.24148 5.33607 5.41287 5.50707 5.53630 5.57378 5.70833 6.26065 6.27669 6.37581 6.86327 7.34666 8.07032 8.31762 9.29309 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019518 B = 0.002348 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.224218 B =11924.207294 C =12887.687024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.340 6.340 3 C 0.121 3.879 4 C -0.171 4.171 5 C -0.089 4.089 6 C -0.101 4.101 7 C -0.119 4.119 8 C -0.111 4.111 9 C -0.036 4.036 10 C 0.598 3.402 11 O -0.546 6.546 12 N -0.694 5.694 13 C 0.147 3.853 14 H 0.070 0.930 15 C -0.151 4.151 16 C 0.166 3.834 17 H 0.048 0.952 18 C -0.160 4.160 19 N -0.731 5.731 20 C -0.239 4.239 21 H 0.076 0.924 22 C -0.074 4.074 23 N -0.968 5.968 24 Si 0.972 3.028 25 H -0.287 1.287 26 H -0.297 1.297 27 H -0.271 1.271 28 O -0.189 6.189 29 C 0.012 3.988 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.174 0.826 34 H 0.174 0.826 35 H 0.158 0.842 36 H 0.186 0.814 37 H 0.414 0.586 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.046 0.954 43 H 0.054 0.946 44 H 0.378 0.622 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.767 20.019 -2.497 34.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.255 6.255 3 C 0.075 3.925 4 C -0.189 4.189 5 C -0.107 4.107 6 C -0.119 4.119 7 C -0.120 4.120 8 C -0.131 4.131 9 C -0.086 4.086 10 C 0.384 3.616 11 O -0.426 6.426 12 N -0.346 5.346 13 C 0.042 3.958 14 H 0.088 0.912 15 C -0.210 4.210 16 C 0.057 3.943 17 H 0.066 0.934 18 C -0.219 4.219 19 N -0.374 5.374 20 C -0.371 4.371 21 H 0.094 0.906 22 C -0.267 4.267 23 N -0.619 5.619 24 Si 0.802 3.198 25 H -0.214 1.214 26 H -0.224 1.224 27 H -0.196 1.196 28 O -0.092 6.092 29 C -0.036 4.036 30 H 0.093 0.907 31 H 0.132 0.868 32 H 0.092 0.908 33 H 0.191 0.809 34 H 0.191 0.809 35 H 0.176 0.824 36 H 0.203 0.797 37 H 0.252 0.748 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.212 0.788 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -27.006 19.800 -2.340 33.568 hybrid contribution 0.542 -1.168 0.291 1.320 sum -26.463 18.633 -2.049 32.430 Atomic orbital electron populations 1.23439 0.75526 1.05811 1.02978 1.86147 1.24241 1.26258 1.88812 1.18067 0.86156 0.86931 1.01323 1.21491 1.01551 0.90225 1.05673 1.21056 0.93942 0.98241 0.97452 1.20684 0.93785 0.96911 1.00566 1.19953 0.92254 0.93776 1.06057 1.23005 0.95654 0.94096 1.00394 1.21843 0.83533 0.93091 1.10181 1.16841 0.85624 0.82389 0.76715 1.90870 1.31507 1.68110 1.52143 1.46023 1.10604 1.05323 1.72650 1.21086 0.84464 0.92532 0.97700 0.91199 1.22055 1.01762 1.01674 0.95474 1.20491 0.87650 0.88757 0.97367 0.93424 1.22375 0.98008 1.00644 1.00916 1.42609 1.19430 1.37906 1.37458 1.19593 1.01677 1.07648 1.08200 0.90567 1.25536 0.97259 1.02864 1.01005 1.69805 1.10925 1.44447 1.36678 0.85156 0.76448 0.79354 0.78874 1.21374 1.22380 1.19572 1.84021 1.12897 1.35584 1.76654 1.19403 0.88341 0.87561 1.08263 0.90728 0.86845 0.90777 0.80874 0.80897 0.82406 0.79697 0.74762 0.92492 0.92163 0.91023 0.91376 0.93501 0.92700 0.78777 0.94011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.34 -6.65 10.50 -93.13 -0.98 -7.63 16 3 C 0.12 2.37 6.70 22.57 0.15 2.52 16 4 C -0.17 -1.99 9.03 22.40 0.20 -1.78 16 5 C -0.09 -0.86 9.97 22.02 0.22 -0.64 16 6 C -0.10 -1.39 10.06 22.27 0.22 -1.17 16 7 C -0.12 -2.55 6.38 -20.25 -0.13 -2.68 16 8 C -0.11 -2.65 10.81 23.79 0.26 -2.40 16 9 C -0.04 -1.03 7.07 24.00 0.17 -0.86 16 10 C 0.60 19.24 7.76 86.53 0.67 19.91 16 11 O -0.55 -20.58 16.49 -4.22 -0.07 -20.65 16 12 N -0.69 -21.29 4.98 -446.20 -2.22 -23.51 16 13 C 0.15 5.28 2.62 44.99 0.12 5.40 16 14 H 0.07 2.85 7.58 -2.39 -0.02 2.83 16 15 C -0.15 -5.27 9.00 71.98 0.65 -4.62 16 16 C 0.17 6.57 2.93 44.99 0.13 6.70 16 17 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 18 C -0.16 -5.42 9.01 71.98 0.65 -4.77 16 19 N -0.73 -36.64 5.03 -322.94 -1.63 -38.26 16 20 C -0.24 -13.24 9.93 84.04 0.83 -12.41 16 21 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 22 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 23 N -0.97 -59.36 13.06 21.65 0.28 -59.08 16 24 Si 0.97 46.41 29.55 68.60 2.03 48.44 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 26 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 27 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 28 O -0.19 -5.34 10.28 -13.43 -0.14 -5.48 16 29 C 0.01 0.30 7.35 23.14 0.17 0.47 16 30 H 0.07 0.36 7.66 -2.38 -0.02 0.34 16 31 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.36 7.66 -2.39 -0.02 0.35 16 33 H 0.17 0.78 6.26 -2.91 -0.02 0.76 16 34 H 0.17 0.33 8.06 -2.91 -0.02 0.31 16 35 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.19 3.76 8.06 -2.91 -0.02 3.73 16 37 H 0.41 11.18 6.29 -92.71 -0.58 10.60 16 38 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.06 2.35 6.29 -2.39 -0.02 2.33 16 40 H 0.07 2.27 6.56 -2.39 -0.02 2.26 16 41 H 0.07 1.84 6.29 -2.39 -0.02 1.82 16 42 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.05 1.86 6.57 -2.38 -0.02 1.85 16 44 H 0.38 20.16 5.77 -92.71 -0.54 19.62 16 45 H 0.25 14.97 8.31 -92.72 -0.77 14.20 16 Total: -1.00 -73.58 374.89 3.10 -70.48 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: -0.07 Total: 34.56 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 5.90 Total: 1.14 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -3.57 Total: -120.85 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -1.19 Total: -33.77 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -73.58 3.10 -70.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725112339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.790 kcal (2) G-P(sol) polarization free energy of solvation -73.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds