Wall clock time and date at job start Tue Mar 31 2020 18:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35957 * 117.00316 * 2 1 4 4 C 1.38268 * 120.11890 * 359.97287 * 3 2 1 5 5 C 1.38772 * 120.67719 * 179.97438 * 4 3 2 6 6 C 1.36624 * 120.49714 * 0.04988 * 5 4 3 7 7 C 1.39780 * 119.81119 * 359.95433 * 6 5 4 8 8 C 1.46257 * 134.15347 * 180.02562 * 7 6 5 9 9 C 1.35805 * 106.09294 * 180.02562 * 8 7 6 10 10 C 1.46986 * 125.14335 * 179.97438 * 9 8 7 11 11 O 1.21652 * 119.99830 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00361 * 180.02562 * 10 9 8 13 13 C 1.46490 * 120.00257 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.47593 * 324.99890 * 13 12 10 15 15 C 1.53006 * 109.47166 * 85.00077 * 13 12 10 16 16 C 1.53006 * 109.47368 * 204.99935 * 13 12 10 17 17 H 1.09003 * 109.46914 * 64.99780 * 16 13 12 18 18 C 1.52999 * 109.46809 * 305.00367 * 16 13 12 19 19 N 1.46493 * 109.47135 * 184.99920 * 16 13 12 20 20 C 1.36945 * 119.99892 * 204.99848 * 19 16 13 21 21 H 1.08000 * 119.99422 * 359.72792 * 20 19 16 22 22 C 1.38811 * 120.00031 * 179.72716 * 20 19 16 23 23 N 1.31616 * 119.99707 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99814 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47151 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47196 * 120.00214 * 24 22 20 27 27 H 1.48500 * 109.46879 * 240.00070 * 24 22 20 28 28 O 1.34933 * 109.71423 * 0.24636 * 9 8 7 29 29 C 1.34772 * 110.84690 * 359.58284 * 28 9 8 30 30 H 1.08996 * 109.46820 * 60.00028 * 1 2 3 31 31 H 1.08997 * 109.46957 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46734 * 300.00101 * 1 2 3 33 33 H 1.07996 * 119.65894 * 0.02955 * 4 3 2 34 34 H 1.07997 * 119.74717 * 180.02562 * 5 4 3 35 35 H 1.07999 * 120.09634 * 179.97438 * 6 5 4 36 36 H 1.08003 * 126.95200 * 0.03879 * 8 7 6 37 37 H 0.97008 * 119.99550 * 0.02562 * 12 10 9 38 38 H 1.09001 * 109.47218 * 60.00196 * 15 13 12 39 39 H 1.09003 * 109.46910 * 179.97438 * 15 13 12 40 40 H 1.08994 * 109.46703 * 299.99903 * 15 13 12 41 41 H 1.09003 * 109.46903 * 299.99419 * 18 16 13 42 42 H 1.08994 * 109.47399 * 59.99551 * 18 16 13 43 43 H 1.09003 * 109.46886 * 180.02562 * 18 16 13 44 44 H 0.97000 * 120.00738 * 24.73313 * 19 16 13 45 45 H 0.97004 * 119.99151 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2957 2.3726 -0.0006 5 6 1.9137 3.6151 0.0000 6 6 3.2766 3.7116 0.0000 7 6 4.0554 2.5509 0.0005 8 6 5.4945 2.2897 0.0012 9 6 5.6318 0.9386 0.0009 10 6 6.9131 0.2184 0.0008 11 8 7.9596 0.8387 0.0015 12 7 6.9287 -1.1294 -0.0001 13 6 8.2057 -1.8471 0.0004 14 1 8.9354 -1.2910 -0.5882 15 6 8.7108 -1.9884 1.4377 16 6 8.0102 -3.2363 -0.6103 17 1 7.7361 -3.1362 -1.6605 18 6 6.8971 -3.9709 0.1395 19 7 9.2572 -3.9975 -0.5015 20 6 9.5169 -5.0153 -1.3801 21 1 8.8005 -5.2597 -2.1503 22 6 10.7011 -5.7328 -1.2805 23 7 11.5739 -5.4352 -0.3415 24 14 11.0556 -7.1208 -2.4794 25 1 9.9237 -7.2539 -3.4314 26 1 12.3014 -6.8206 -3.2297 27 1 11.2234 -8.3916 -1.7297 28 8 4.4141 0.3573 -0.0054 29 6 3.4387 1.2873 -0.0003 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.2175 2.3119 -0.0005 34 1 1.3128 4.5124 -0.0001 35 1 3.7508 4.6820 0.0000 36 1 6.2875 3.0229 0.0020 37 1 6.0942 -1.6240 -0.0011 38 1 7.9812 -2.5446 2.0263 39 1 9.6608 -2.5229 1.4381 40 1 8.8501 -0.9988 1.8727 41 1 7.1713 -4.0711 1.1897 42 1 5.9694 -3.4046 0.0586 43 1 6.7582 -4.9608 -0.2953 44 1 9.9007 -3.7780 0.1903 45 1 12.4012 -5.9369 -0.2718 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725112341.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:50 Heat of formation + Delta-G solvation = -24.664901 kcal Electronic energy + Delta-G solvation = -27831.302738 eV Core-core repulsion = 23816.516843 eV Total energy + Delta-G solvation = -4014.785895 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.78579 -40.04675 -39.48699 -37.30326 -36.98818 -34.01427 -32.68800 -31.93323 -30.75408 -29.88562 -29.09899 -28.20681 -27.70809 -24.86062 -24.21418 -23.18371 -22.77053 -21.69231 -20.63264 -19.30806 -18.68911 -18.09003 -17.69087 -17.28689 -16.83025 -15.99589 -15.88854 -15.71773 -15.40711 -14.91084 -14.60647 -14.48968 -14.13396 -13.85086 -13.67582 -13.47183 -13.27742 -12.85218 -12.73125 -12.67023 -12.45324 -11.99587 -11.87089 -11.74306 -11.68584 -11.65370 -11.30450 -10.96808 -10.83828 -10.53473 -10.29293 -10.20941 -10.13963 -9.97113 -9.67662 -9.06765 -8.95116 -8.85058 -8.22950 -7.01150 -5.78943 -3.08455 0.29472 0.96021 1.59248 2.18020 2.76631 3.09355 3.12424 3.29408 3.43038 3.48850 3.50882 4.19510 4.36646 4.38424 4.58542 4.60105 4.73163 4.75764 4.87681 4.93755 5.00091 5.08896 5.28021 5.31770 5.45019 5.61870 5.63274 5.68084 5.71736 5.79801 5.92562 6.03675 6.04809 6.12751 6.15449 6.27642 6.36583 6.41795 6.46198 6.60957 6.71258 6.84470 6.96961 7.06875 7.52581 7.69332 8.09389 8.39506 9.51007 10.05669 10.40783 11.43697 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019517 B = 0.002348 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.334378 B =11923.752238 C =12886.314266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C 0.144 3.856 4 C -0.187 4.187 5 C -0.098 4.098 6 C -0.100 4.100 7 C -0.102 4.102 8 C -0.126 4.126 9 C -0.007 4.007 10 C 0.594 3.406 11 O -0.514 6.514 12 N -0.702 5.702 13 C 0.133 3.867 14 H 0.093 0.907 15 C -0.160 4.160 16 C 0.168 3.832 17 H 0.053 0.947 18 C -0.170 4.170 19 N -0.719 5.719 20 C -0.240 4.240 21 H 0.072 0.928 22 C -0.012 4.012 23 N -0.931 5.931 24 Si 0.908 3.092 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.292 1.292 28 O -0.173 6.173 29 C 0.042 3.958 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.141 0.859 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.174 0.826 37 H 0.405 0.595 38 H 0.058 0.942 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.034 0.966 43 H 0.059 0.941 44 H 0.387 0.613 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.303 18.239 2.803 30.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.098 3.902 4 C -0.206 4.206 5 C -0.116 4.116 6 C -0.118 4.118 7 C -0.103 4.103 8 C -0.147 4.147 9 C -0.058 4.058 10 C 0.378 3.622 11 O -0.391 6.391 12 N -0.353 5.353 13 C 0.029 3.971 14 H 0.111 0.889 15 C -0.219 4.219 16 C 0.057 3.943 17 H 0.071 0.929 18 C -0.230 4.230 19 N -0.362 5.362 20 C -0.371 4.371 21 H 0.090 0.910 22 C -0.208 4.208 23 N -0.579 5.579 24 Si 0.739 3.261 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.219 1.219 28 O -0.074 6.074 29 C -0.006 4.006 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.076 0.924 33 H 0.158 0.842 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.191 0.809 37 H 0.242 0.758 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.223 0.777 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -23.475 18.002 2.657 29.702 hybrid contribution -0.276 -0.779 -0.375 0.907 sum -23.751 17.224 2.282 29.428 Atomic orbital electron populations 1.23130 0.77791 1.04481 1.01448 1.86190 1.21776 1.25874 1.88573 1.17741 0.86596 0.85767 1.00084 1.20993 1.00015 0.91042 1.08569 1.20536 0.94229 0.97065 0.99743 1.20266 0.93079 0.96888 1.01607 1.19739 0.92813 0.92978 1.04785 1.22711 0.94477 0.94565 1.02931 1.22297 0.83958 0.92739 1.06806 1.16683 0.85122 0.82634 0.77771 1.90896 1.30078 1.67550 1.50605 1.46242 1.11293 1.05261 1.72539 1.21491 0.83820 0.93812 0.97940 0.88911 1.22159 1.02491 1.01554 0.95662 1.20359 0.88827 0.88013 0.97067 0.92886 1.22547 0.97569 1.01283 1.01622 1.42454 1.17816 1.37788 1.38184 1.19270 1.01698 1.07716 1.08406 0.91041 1.24747 0.96984 1.00102 0.99008 1.69669 1.10329 1.43137 1.34788 0.86108 0.77787 0.81931 0.80288 1.20560 1.21838 1.21881 1.84093 1.12780 1.34805 1.75706 1.18826 0.87519 0.87213 1.07082 0.92365 0.87823 0.92387 0.84155 0.84844 0.84886 0.80888 0.75776 0.92333 0.90159 0.92927 0.92716 0.94761 0.92232 0.77745 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.21 10.50 -19.60 -0.21 -3.42 16 3 C 0.14 1.52 6.70 -39.12 -0.26 1.26 16 4 C -0.19 -1.43 9.03 -39.37 -0.36 -1.78 16 5 C -0.10 -0.68 9.97 -39.97 -0.40 -1.08 16 6 C -0.10 -0.84 10.06 -39.59 -0.40 -1.24 16 7 C -0.10 -1.15 6.38 -105.20 -0.67 -1.82 16 8 C -0.13 -1.52 10.81 -37.23 -0.40 -1.93 16 9 C -0.01 -0.10 7.07 -36.91 -0.26 -0.36 16 10 C 0.59 9.29 7.76 -12.71 -0.10 9.20 16 11 O -0.51 -9.37 16.49 5.23 0.09 -9.28 16 12 N -0.70 -10.61 4.98 -55.02 -0.27 -10.88 16 13 C 0.13 2.33 2.62 -67.93 -0.18 2.16 16 14 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 15 C -0.16 -2.73 9.00 37.16 0.33 -2.39 16 16 C 0.17 3.28 2.93 -67.93 -0.20 3.08 16 17 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 18 C -0.17 -2.94 9.01 37.16 0.33 -2.61 16 19 N -0.72 -17.59 5.03 -53.42 -0.27 -17.86 16 20 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 24 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 28 O -0.17 -2.39 10.28 2.65 0.03 -2.36 16 29 C 0.04 0.53 7.35 -38.24 -0.28 0.25 16 30 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 31 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 33 H 0.14 0.66 6.26 -52.49 -0.33 0.33 16 34 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 35 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.17 1.79 8.06 -52.48 -0.42 1.37 16 37 H 0.41 5.51 6.29 -40.82 -0.26 5.25 16 38 H 0.06 0.93 6.56 -51.93 -0.34 0.59 16 39 H 0.08 1.50 6.29 -51.93 -0.33 1.18 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.95 6.56 -51.93 -0.34 0.61 16 42 H 0.03 0.48 6.29 -51.93 -0.33 0.16 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.39 9.95 5.77 -40.82 -0.24 9.72 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 374.89 15.07 5.65 5.65 Total: -1.00 -32.88 374.89 -7.22 -40.10 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -5.85 Total: 11.19 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -2.09 Total: -3.29 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.18 Total: -55.87 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.09 Total: -15.06 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.88 -7.22 -40.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725112341.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.433 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds