Wall clock time and date at job start Tue Mar 31 2020 18:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35957 * 117.00316 * 2 1 4 4 C 1.38268 * 120.11890 * 359.97287 * 3 2 1 5 5 C 1.38772 * 120.67719 * 179.97438 * 4 3 2 6 6 C 1.36624 * 120.49714 * 0.04988 * 5 4 3 7 7 C 1.39780 * 119.81119 * 359.95433 * 6 5 4 8 8 C 1.46257 * 134.15347 * 180.02562 * 7 6 5 9 9 C 1.35805 * 106.09294 * 180.02562 * 8 7 6 10 10 C 1.46986 * 125.14335 * 179.97438 * 9 8 7 11 11 O 1.21652 * 119.99830 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00361 * 180.02562 * 10 9 8 13 13 C 1.46490 * 120.00257 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.47593 * 324.99890 * 13 12 10 15 15 C 1.53006 * 109.47166 * 85.00077 * 13 12 10 16 16 C 1.53006 * 109.47368 * 204.99935 * 13 12 10 17 17 H 1.09003 * 109.46914 * 64.99780 * 16 13 12 18 18 C 1.52999 * 109.46809 * 305.00367 * 16 13 12 19 19 N 1.46493 * 109.47135 * 184.99920 * 16 13 12 20 20 C 1.36945 * 119.99892 * 204.99848 * 19 16 13 21 21 H 1.08000 * 119.99422 * 359.72792 * 20 19 16 22 22 C 1.38811 * 120.00031 * 179.72716 * 20 19 16 23 23 N 1.31616 * 119.99707 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99814 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47151 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47196 * 120.00214 * 24 22 20 27 27 H 1.48500 * 109.46879 * 240.00070 * 24 22 20 28 28 O 1.34933 * 109.71423 * 0.24636 * 9 8 7 29 29 C 1.34772 * 110.84690 * 359.58284 * 28 9 8 30 30 H 1.08996 * 109.46820 * 60.00028 * 1 2 3 31 31 H 1.08997 * 109.46957 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46734 * 300.00101 * 1 2 3 33 33 H 1.07996 * 119.65894 * 0.02955 * 4 3 2 34 34 H 1.07997 * 119.74717 * 180.02562 * 5 4 3 35 35 H 1.07999 * 120.09634 * 179.97438 * 6 5 4 36 36 H 1.08003 * 126.95200 * 0.03879 * 8 7 6 37 37 H 0.97008 * 119.99550 * 0.02562 * 12 10 9 38 38 H 1.09001 * 109.47218 * 60.00196 * 15 13 12 39 39 H 1.09003 * 109.46910 * 179.97438 * 15 13 12 40 40 H 1.08994 * 109.46703 * 299.99903 * 15 13 12 41 41 H 1.09003 * 109.46903 * 299.99419 * 18 16 13 42 42 H 1.08994 * 109.47399 * 59.99551 * 18 16 13 43 43 H 1.09003 * 109.46886 * 180.02562 * 18 16 13 44 44 H 0.97000 * 120.00738 * 24.73313 * 19 16 13 45 45 H 0.97004 * 119.99151 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2957 2.3726 -0.0006 5 6 1.9137 3.6151 0.0000 6 6 3.2766 3.7116 0.0000 7 6 4.0554 2.5509 0.0005 8 6 5.4945 2.2897 0.0012 9 6 5.6318 0.9386 0.0009 10 6 6.9131 0.2184 0.0008 11 8 7.9596 0.8387 0.0015 12 7 6.9287 -1.1294 -0.0001 13 6 8.2057 -1.8471 0.0004 14 1 8.9354 -1.2910 -0.5882 15 6 8.7108 -1.9884 1.4377 16 6 8.0102 -3.2363 -0.6103 17 1 7.7361 -3.1362 -1.6605 18 6 6.8971 -3.9709 0.1395 19 7 9.2572 -3.9975 -0.5015 20 6 9.5169 -5.0153 -1.3801 21 1 8.8005 -5.2597 -2.1503 22 6 10.7011 -5.7328 -1.2805 23 7 11.5739 -5.4352 -0.3415 24 14 11.0556 -7.1208 -2.4794 25 1 9.9237 -7.2539 -3.4314 26 1 12.3014 -6.8206 -3.2297 27 1 11.2234 -8.3916 -1.7297 28 8 4.4141 0.3573 -0.0054 29 6 3.4387 1.2873 -0.0003 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.2175 2.3119 -0.0005 34 1 1.3128 4.5124 -0.0001 35 1 3.7508 4.6820 0.0000 36 1 6.2875 3.0229 0.0020 37 1 6.0942 -1.6240 -0.0011 38 1 7.9812 -2.5446 2.0263 39 1 9.6608 -2.5229 1.4381 40 1 8.8501 -0.9988 1.8727 41 1 7.1713 -4.0711 1.1897 42 1 5.9694 -3.4046 0.0586 43 1 6.7582 -4.9608 -0.2953 44 1 9.9007 -3.7780 0.1903 45 1 12.4012 -5.9369 -0.2718 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725112341.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:49 Heat of formation + Delta-G solvation = -46.777520 kcal Electronic energy + Delta-G solvation = -27832.261613 eV Core-core repulsion = 23816.516843 eV Total energy + Delta-G solvation = -4015.744770 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.64720 -41.09189 -40.40238 -38.53161 -37.96697 -35.72098 -33.68595 -33.54929 -31.70652 -31.00742 -30.19305 -29.83621 -28.21694 -26.23929 -25.84465 -24.28018 -23.84778 -22.49171 -21.76160 -20.77680 -19.77289 -19.36602 -18.90033 -18.32144 -17.71456 -17.13297 -16.74758 -16.62391 -16.51323 -16.11218 -15.98208 -15.91492 -15.44200 -15.22897 -14.84518 -14.55188 -14.38639 -14.09556 -13.98994 -13.56919 -13.32118 -13.24312 -13.14476 -13.01461 -12.84015 -12.69706 -12.49483 -12.25322 -12.23997 -12.10872 -12.08606 -11.72218 -11.66918 -11.49058 -10.98245 -10.95335 -10.33010 -9.74248 -9.05074 -8.93646 -7.94444 -5.23530 -0.56138 0.26754 0.71228 1.26476 1.48097 1.48712 1.58526 1.93109 1.94771 2.21491 2.57096 2.61839 3.25265 3.39210 3.63484 3.78608 3.83583 3.91266 3.93287 4.02343 4.06325 4.24507 4.28008 4.29156 4.39545 4.42226 4.55066 4.55689 4.64500 4.76478 4.80760 4.90388 4.93802 4.95655 5.05832 5.16157 5.18622 5.24158 5.33607 5.41307 5.50853 5.53759 5.57421 5.70844 6.26049 6.27626 6.37585 6.86312 7.34536 8.06858 8.31475 9.29166 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019517 B = 0.002348 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.334378 B =11923.752238 C =12886.314266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.340 6.340 3 C 0.121 3.879 4 C -0.171 4.171 5 C -0.089 4.089 6 C -0.101 4.101 7 C -0.119 4.119 8 C -0.111 4.111 9 C -0.036 4.036 10 C 0.598 3.402 11 O -0.546 6.546 12 N -0.694 5.694 13 C 0.147 3.853 14 H 0.070 0.930 15 C -0.151 4.151 16 C 0.166 3.834 17 H 0.048 0.952 18 C -0.160 4.160 19 N -0.731 5.731 20 C -0.238 4.238 21 H 0.077 0.923 22 C -0.075 4.075 23 N -0.968 5.968 24 Si 0.972 3.028 25 H -0.266 1.266 26 H -0.295 1.295 27 H -0.294 1.294 28 O -0.189 6.189 29 C 0.012 3.988 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.174 0.826 34 H 0.174 0.826 35 H 0.158 0.842 36 H 0.186 0.814 37 H 0.414 0.586 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.068 0.932 43 H 0.046 0.954 44 H 0.378 0.622 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.836 20.000 2.538 34.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.255 6.255 3 C 0.075 3.925 4 C -0.189 4.189 5 C -0.107 4.107 6 C -0.119 4.119 7 C -0.120 4.120 8 C -0.132 4.132 9 C -0.086 4.086 10 C 0.384 3.616 11 O -0.426 6.426 12 N -0.346 5.346 13 C 0.042 3.958 14 H 0.088 0.912 15 C -0.210 4.210 16 C 0.057 3.943 17 H 0.066 0.934 18 C -0.219 4.219 19 N -0.374 5.374 20 C -0.370 4.370 21 H 0.095 0.905 22 C -0.267 4.267 23 N -0.619 5.619 24 Si 0.802 3.198 25 H -0.191 1.191 26 H -0.223 1.223 27 H -0.221 1.221 28 O -0.092 6.092 29 C -0.036 4.036 30 H 0.092 0.908 31 H 0.132 0.868 32 H 0.093 0.907 33 H 0.191 0.809 34 H 0.191 0.809 35 H 0.176 0.824 36 H 0.203 0.797 37 H 0.252 0.748 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.065 0.935 44 H 0.212 0.788 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -27.089 19.776 2.379 33.624 hybrid contribution 0.569 -1.153 -0.297 1.320 sum -26.520 18.623 2.083 32.472 Atomic orbital electron populations 1.23439 0.75522 1.05811 1.02977 1.86146 1.24242 1.26261 1.88810 1.18064 0.86157 0.86932 1.01320 1.21493 1.01550 0.90225 1.05675 1.21052 0.93943 0.98241 0.97453 1.20681 0.93786 0.96911 1.00568 1.19957 0.92253 0.93776 1.06056 1.23006 0.95654 0.94097 1.00396 1.21843 0.83533 0.93091 1.10179 1.16839 0.85622 0.82389 0.76715 1.90868 1.31514 1.68105 1.52138 1.46021 1.10602 1.05322 1.72653 1.21087 0.84470 0.92536 0.97701 0.91209 1.22055 1.01771 1.01668 0.95473 1.20492 0.87664 0.88748 0.97361 0.93438 1.22372 0.97994 1.00640 1.00922 1.42621 1.19332 1.37892 1.37570 1.19631 1.01425 1.07680 1.08232 0.90546 1.25538 0.97239 1.02909 1.01026 1.69821 1.10729 1.44544 1.36770 0.85089 0.77572 0.78831 0.78347 1.19069 1.22269 1.22078 1.84021 1.12896 1.35588 1.76654 1.19400 0.88340 0.87562 1.08265 0.90779 0.86846 0.90724 0.80874 0.80900 0.82407 0.79698 0.74758 0.91020 0.92164 0.92490 0.92688 0.91378 0.93496 0.78779 0.94025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.34 -6.65 10.50 -93.07 -0.98 -7.63 16 3 C 0.12 2.37 6.70 22.57 0.15 2.52 16 4 C -0.17 -1.99 9.03 22.40 0.20 -1.78 16 5 C -0.09 -0.86 9.97 22.02 0.22 -0.64 16 6 C -0.10 -1.39 10.06 22.27 0.22 -1.17 16 7 C -0.12 -2.55 6.38 -20.24 -0.13 -2.68 16 8 C -0.11 -2.66 10.81 23.79 0.26 -2.40 16 9 C -0.04 -1.03 7.07 24.00 0.17 -0.86 16 10 C 0.60 19.24 7.76 86.53 0.67 19.91 16 11 O -0.55 -20.58 16.49 -4.20 -0.07 -20.65 16 12 N -0.69 -21.27 4.98 -446.21 -2.22 -23.50 16 13 C 0.15 5.27 2.62 45.00 0.12 5.39 16 14 H 0.07 2.84 7.58 -2.38 -0.02 2.83 16 15 C -0.15 -5.26 9.00 71.98 0.65 -4.61 16 16 C 0.17 6.57 2.93 44.99 0.13 6.70 16 17 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 18 C -0.16 -5.41 9.01 71.98 0.65 -4.76 16 19 N -0.73 -36.61 5.03 -322.94 -1.63 -38.24 16 20 C -0.24 -13.15 9.93 84.03 0.83 -12.31 16 21 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 22 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 23 N -0.97 -59.36 13.06 21.65 0.28 -59.08 16 24 Si 0.97 46.43 29.55 68.60 2.03 48.45 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 26 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 27 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 28 O -0.19 -5.34 10.28 -13.42 -0.14 -5.48 16 29 C 0.01 0.30 7.35 23.14 0.17 0.47 16 30 H 0.07 0.36 7.66 -2.39 -0.02 0.35 16 31 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.36 7.66 -2.39 -0.02 0.34 16 33 H 0.17 0.78 6.26 -2.91 -0.02 0.76 16 34 H 0.17 0.33 8.06 -2.91 -0.02 0.31 16 35 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.19 3.76 8.06 -2.91 -0.02 3.73 16 37 H 0.41 11.17 6.29 -92.70 -0.58 10.59 16 38 H 0.07 2.27 6.56 -2.39 -0.02 2.25 16 39 H 0.06 2.35 6.29 -2.39 -0.02 2.33 16 40 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.05 1.86 6.56 -2.39 -0.02 1.85 16 42 H 0.07 1.84 6.29 -2.39 -0.02 1.82 16 43 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.38 20.15 5.77 -92.71 -0.54 19.61 16 45 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -73.62 374.89 3.10 -70.52 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: -0.07 Total: 34.39 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 5.90 Total: 1.20 kcal Atomic # 7 Polarization: -117.24 SS G_CDS: -3.57 Total: -120.81 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -1.18 Total: -33.75 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.45 kcal Total: -73.62 3.10 -70.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725112341.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.739 kcal (2) G-P(sol) polarization free energy of solvation -73.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds