Wall clock time and date at job start Tue Mar 31 2020 18:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35973 * 116.99733 * 2 1 4 4 C 1.38260 * 120.12221 * 359.97438 * 3 2 1 5 5 C 1.38764 * 120.67610 * 179.97438 * 4 3 2 6 6 C 1.36625 * 120.49825 * 0.02587 * 5 4 3 7 7 C 1.39782 * 119.81486 * 359.97438 * 6 5 4 8 8 C 1.46243 * 134.15606 * 179.97438 * 7 6 5 9 9 C 1.35812 * 106.09219 * 180.02562 * 8 7 6 10 10 C 1.46991 * 125.14554 * 180.02562 * 9 8 7 11 11 O 1.21653 * 119.99796 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00216 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99828 * 180.27756 * 12 10 9 14 14 H 1.09004 * 109.47372 * 34.71852 * 13 12 10 15 15 C 1.52997 * 109.47036 * 274.72131 * 13 12 10 16 16 C 1.52999 * 109.46963 * 154.72290 * 13 12 10 17 17 H 1.08995 * 109.47266 * 59.99845 * 16 13 12 18 18 C 1.53004 * 109.46947 * 299.99341 * 16 13 12 19 19 N 1.46507 * 109.47137 * 179.97438 * 16 13 12 20 20 C 1.36936 * 120.00163 * 205.00109 * 19 16 13 21 21 H 1.08002 * 119.99631 * 359.97438 * 20 19 16 22 22 C 1.38806 * 120.00202 * 179.97438 * 20 19 16 23 23 N 1.31624 * 120.00103 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00060 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46896 * 89.99853 * 24 22 20 26 26 H 1.48494 * 109.47103 * 209.99657 * 24 22 20 27 27 H 1.48496 * 109.47341 * 330.00166 * 24 22 20 28 28 O 1.34930 * 109.71411 * 0.26608 * 9 8 7 29 29 C 1.34769 * 110.84290 * 359.55125 * 28 9 8 30 30 H 1.09001 * 109.47490 * 59.99419 * 1 2 3 31 31 H 1.09002 * 109.47493 * 179.97438 * 1 2 3 32 32 H 1.09010 * 109.47439 * 299.99613 * 1 2 3 33 33 H 1.07997 * 119.65756 * 0.02562 * 4 3 2 34 34 H 1.08007 * 119.75283 * 180.02562 * 5 4 3 35 35 H 1.08003 * 120.09451 * 180.02562 * 6 5 4 36 36 H 1.08000 * 126.95823 * 0.06062 * 8 7 6 37 37 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 38 38 H 1.09009 * 109.47238 * 300.00198 * 15 13 12 39 39 H 1.08997 * 109.47293 * 60.00168 * 15 13 12 40 40 H 1.09003 * 109.47189 * 180.02562 * 15 13 12 41 41 H 1.09010 * 109.46876 * 179.97438 * 18 16 13 42 42 H 1.08994 * 109.47427 * 299.99790 * 18 16 13 43 43 H 1.08999 * 109.46966 * 60.00966 * 18 16 13 44 44 H 0.97000 * 119.99602 * 24.99287 * 19 16 13 45 45 H 0.96995 * 120.00144 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2956 2.3727 -0.0005 5 6 1.9135 3.6151 0.0000 6 6 3.2764 3.7117 0.0005 7 6 4.0554 2.5511 0.0011 8 6 5.4943 2.2900 0.0012 9 6 5.6317 0.9388 0.0013 10 6 6.9130 0.2186 0.0020 11 8 7.9595 0.8390 0.0030 12 7 6.9286 -1.1291 0.0014 13 6 8.2057 -1.8468 0.0082 14 1 8.9331 -1.2888 0.5979 15 6 8.7165 -1.9925 -1.4266 16 6 8.0078 -3.2341 0.6224 17 1 7.2805 -3.7921 0.0327 18 6 7.4970 -3.0884 2.0573 19 7 9.2848 -3.9521 0.6287 20 6 9.3004 -5.3214 0.6338 21 1 8.3713 -5.8720 0.6336 22 6 10.5103 -6.0017 0.6392 23 7 11.6427 -5.3307 0.6390 24 14 10.5315 -7.8696 0.6468 25 1 10.5402 -8.3702 -0.7512 26 1 11.7480 -8.3479 1.3514 27 1 9.3232 -8.3755 1.3462 28 8 4.4140 0.3575 -0.0048 29 6 3.4386 1.2875 0.0009 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8901 33 1 0.2173 2.3120 -0.0005 34 1 1.3126 4.5126 0.0000 35 1 3.7505 4.6821 0.0013 36 1 6.2873 3.0231 0.0018 37 1 6.0942 -1.6237 0.0009 38 1 7.9892 -2.5506 -2.0163 39 1 8.8575 -1.0042 -1.8641 40 1 9.6665 -2.5269 -1.4216 41 1 7.3556 -4.0768 2.4947 42 1 8.2243 -2.5304 2.6470 43 1 6.5468 -2.5544 2.0523 44 1 10.1192 -3.4576 0.6292 45 1 12.4881 -5.8061 0.6424 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725112342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:53 Heat of formation + Delta-G solvation = -50.389172 kcal Electronic energy + Delta-G solvation = -27810.464224 eV Core-core repulsion = 23794.562841 eV Total energy + Delta-G solvation = -4015.901383 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.64106 -41.05207 -40.38810 -38.36765 -37.96427 -35.71835 -33.65095 -33.54285 -31.75214 -31.02132 -30.20813 -30.12238 -28.20858 -25.93950 -25.67237 -23.98878 -23.73559 -22.46957 -21.70821 -21.54665 -19.65562 -19.33536 -18.88918 -18.30732 -17.70837 -17.27137 -16.71518 -16.56412 -16.50559 -16.03068 -15.96779 -15.62979 -15.37062 -15.06255 -14.75207 -14.61889 -14.40388 -14.15095 -14.06671 -13.52855 -13.33038 -13.28232 -13.20490 -12.96076 -12.73047 -12.64027 -12.49213 -12.32718 -12.24942 -12.23674 -12.15474 -11.79176 -11.57287 -11.45103 -10.99960 -10.94563 -10.32419 -9.73797 -9.02820 -8.93289 -7.92103 -5.21367 -0.55445 0.27029 0.71880 1.27080 1.49141 1.50293 1.58442 1.93317 1.96045 2.21684 2.58634 2.62088 3.25854 3.41705 3.63796 3.71906 3.83053 3.91808 3.97726 4.06726 4.14557 4.25118 4.28958 4.31377 4.39544 4.42133 4.55223 4.56242 4.70730 4.76418 4.83696 4.89799 4.95096 4.99267 5.06077 5.08322 5.24456 5.28140 5.36900 5.41546 5.45913 5.51892 5.55982 5.71277 6.27142 6.28423 6.38229 6.87744 7.35325 8.06955 8.31626 9.31166 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019484 B = 0.002363 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.723306 B =11848.904902 C =12945.021952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.340 6.340 3 C 0.121 3.879 4 C -0.171 4.171 5 C -0.089 4.089 6 C -0.102 4.102 7 C -0.119 4.119 8 C -0.112 4.112 9 C -0.035 4.035 10 C 0.600 3.400 11 O -0.546 6.546 12 N -0.692 5.692 13 C 0.148 3.852 14 H 0.072 0.928 15 C -0.145 4.145 16 C 0.169 3.831 17 H 0.059 0.941 18 C -0.156 4.156 19 N -0.728 5.728 20 C -0.234 4.234 21 H 0.079 0.921 22 C -0.075 4.075 23 N -0.969 5.969 24 Si 0.971 3.029 25 H -0.288 1.288 26 H -0.299 1.299 27 H -0.270 1.270 28 O -0.189 6.189 29 C 0.012 3.988 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.174 0.826 34 H 0.173 0.827 35 H 0.158 0.842 36 H 0.185 0.815 37 H 0.415 0.585 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.045 0.955 42 H 0.037 0.963 43 H 0.065 0.935 44 H 0.374 0.626 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.722 20.122 -2.197 34.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.255 6.255 3 C 0.075 3.925 4 C -0.190 4.190 5 C -0.107 4.107 6 C -0.120 4.120 7 C -0.120 4.120 8 C -0.133 4.133 9 C -0.085 4.085 10 C 0.386 3.614 11 O -0.426 6.426 12 N -0.342 5.342 13 C 0.043 3.957 14 H 0.090 0.910 15 C -0.203 4.203 16 C 0.059 3.941 17 H 0.077 0.923 18 C -0.216 4.216 19 N -0.369 5.369 20 C -0.365 4.365 21 H 0.096 0.904 22 C -0.267 4.267 23 N -0.619 5.619 24 Si 0.801 3.199 25 H -0.215 1.215 26 H -0.226 1.226 27 H -0.194 1.194 28 O -0.091 6.091 29 C -0.036 4.036 30 H 0.093 0.907 31 H 0.131 0.869 32 H 0.092 0.908 33 H 0.191 0.809 34 H 0.191 0.809 35 H 0.176 0.824 36 H 0.203 0.797 37 H 0.251 0.749 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.084 0.916 44 H 0.206 0.794 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -27.013 19.831 -2.199 33.583 hybrid contribution 0.507 -1.233 0.102 1.337 sum -26.506 18.599 -2.097 32.448 Atomic orbital electron populations 1.23437 0.75541 1.05800 1.02970 1.86149 1.24229 1.26264 1.88817 1.18069 0.86177 0.86915 1.01320 1.21486 1.01543 0.90235 1.05708 1.21049 0.93951 0.98235 0.97472 1.20681 0.93783 0.96921 1.00590 1.19954 0.92279 0.93767 1.06035 1.23000 0.95626 0.94137 1.00508 1.21851 0.83546 0.93064 1.10063 1.16790 0.85572 0.82312 0.76724 1.90869 1.31509 1.68062 1.52183 1.45837 1.10490 1.05321 1.72553 1.21094 0.84588 0.92598 0.97413 0.91003 1.21952 1.01850 1.01109 0.95385 1.20526 0.88883 0.89966 0.94678 0.92256 1.22314 1.00103 1.00875 0.98298 1.42427 1.02729 1.03010 1.88688 1.19561 0.92583 0.83608 1.40781 0.90359 1.25524 0.95199 1.02061 1.03934 1.69822 0.96926 1.35596 1.59571 0.85173 0.76772 0.80678 0.77324 1.21503 1.22576 1.19444 1.84023 1.12894 1.35556 1.76618 1.19396 0.88336 0.87566 1.08264 0.90747 0.86858 0.90774 0.80899 0.80921 0.82427 0.79731 0.74868 0.91880 0.92807 0.92221 0.93579 0.94361 0.91609 0.79409 0.94123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.34 -6.66 10.50 -93.25 -0.98 -7.63 16 3 C 0.12 2.37 6.70 22.57 0.15 2.52 16 4 C -0.17 -1.99 9.03 22.40 0.20 -1.79 16 5 C -0.09 -0.86 9.97 22.02 0.22 -0.64 16 6 C -0.10 -1.39 10.05 22.27 0.22 -1.17 16 7 C -0.12 -2.54 6.38 -20.25 -0.13 -2.66 16 8 C -0.11 -2.66 10.81 23.79 0.26 -2.41 16 9 C -0.04 -0.98 7.07 24.00 0.17 -0.81 16 10 C 0.60 18.97 7.76 86.54 0.67 19.64 16 11 O -0.55 -20.31 16.49 -4.20 -0.07 -20.38 16 12 N -0.69 -20.78 4.38 -446.22 -1.95 -22.73 16 13 C 0.15 5.23 2.21 44.99 0.10 5.33 16 14 H 0.07 2.83 7.57 -2.39 -0.02 2.82 16 15 C -0.14 -5.14 9.33 71.98 0.67 -4.47 16 16 C 0.17 6.54 2.52 44.99 0.11 6.65 16 17 H 0.06 2.24 8.08 -2.39 -0.02 2.22 16 18 C -0.16 -5.61 9.34 71.98 0.67 -4.94 16 19 N -0.73 -36.01 4.43 -322.93 -1.43 -37.44 16 20 C -0.23 -12.69 9.93 84.03 0.83 -11.85 16 21 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 22 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 23 N -0.97 -59.25 13.06 21.65 0.28 -58.96 16 24 Si 0.97 46.05 29.55 68.60 2.03 48.08 16 25 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 26 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 27 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 28 O -0.19 -5.27 10.28 -13.37 -0.14 -5.41 16 29 C 0.01 0.30 7.35 23.14 0.17 0.47 16 30 H 0.07 0.36 7.66 -2.39 -0.02 0.34 16 31 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.37 7.66 -2.38 -0.02 0.35 16 33 H 0.17 0.78 6.26 -2.91 -0.02 0.77 16 34 H 0.17 0.34 8.06 -2.91 -0.02 0.32 16 35 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.19 3.73 8.06 -2.91 -0.02 3.70 16 37 H 0.41 10.90 8.10 -92.71 -0.75 10.15 16 38 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 39 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.06 2.42 7.44 -2.39 -0.02 2.40 16 41 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 42 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.07 1.96 7.44 -2.39 -0.02 1.95 16 44 H 0.37 20.17 7.58 -92.71 -0.70 19.47 16 45 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -72.55 382.59 3.22 -69.33 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: -0.42 Total: 33.83 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 5.91 Total: 1.32 kcal Atomic # 7 Polarization: -116.04 SS G_CDS: -3.10 Total: -119.14 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -1.19 Total: -33.42 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -72.55 3.22 -69.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725112342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.940 kcal (2) G-P(sol) polarization free energy of solvation -72.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds