Wall clock time and date at job start Tue Mar 31 2020 16:58:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08993 * 110.66550 * 2 1
4 4 C 1.54700 * 110.74256 * 236.79185 * 2 1 3
5 5 C 1.51676 * 101.91797 * 216.19952 * 4 2 1
6 6 C 1.37309 * 132.06186 * 195.93275 * 5 4 2
7 7 C 1.39809 * 119.86293 * 179.27031 * 6 5 4
8 8 C 1.47600 * 120.26824 * 179.76994 * 7 6 5
9 9 O 1.21589 * 120.00052 * 359.72037 * 8 7 6
10 10 N 1.34777 * 120.00184 * 179.72416 * 8 7 6
11 11 C 1.46497 * 120.00057 * 180.02562 * 10 8 7
12 12 C 1.53004 * 109.47190 * 179.97438 * 11 10 8
13 13 O 1.42902 * 113.28066 * 313.06652 * 12 11 10
14 14 C 1.53495 * 114.20485 * 179.97438 * 12 11 10
15 15 N 1.47069 * 87.98211 * 220.15073 * 14 12 11
16 16 C 1.36945 * 136.05451 * 207.08986 * 15 14 12
17 17 H 1.07999 * 120.00077 * 359.97438 * 16 15 14
18 18 C 1.38812 * 119.99637 * 179.97438 * 16 15 14
19 19 N 1.31617 * 120.00227 * 0.02562 * 18 16 15
20 20 Si 1.86800 * 119.99854 * 179.97438 * 18 16 15
21 21 H 1.48504 * 109.47118 * 90.00067 * 20 18 16
22 22 H 1.48499 * 109.47293 * 210.00071 * 20 18 16
23 23 H 1.48504 * 109.47104 * 330.00316 * 20 18 16
24 24 C 1.47061 * 87.88769 * 27.34318 * 15 14 12
25 25 C 1.39750 * 119.46389 * 359.49390 * 7 6 5
26 26 C 1.37476 * 120.20675 * 0.43701 * 25 7 6
27 27 C 1.39186 * 107.00556 * 15.15664 * 5 4 2
28 28 O 1.36000 * 111.15169 * 1.46044 * 27 5 4
29 29 H 1.08992 * 109.47427 * 183.20559 * 1 2 3
30 30 H 1.09000 * 109.47325 * 303.20758 * 1 2 3
31 31 H 1.09006 * 109.47194 * 63.20363 * 1 2 3
32 32 H 1.08999 * 110.94001 * 98.05107 * 4 2 1
33 33 H 1.08993 * 110.97299 * 334.36609 * 4 2 1
34 34 H 1.08004 * 120.06799 * 359.04060 * 6 5 4
35 35 H 0.96999 * 119.99984 * 359.97438 * 10 8 7
36 36 H 1.09001 * 109.47433 * 59.99575 * 11 10 8
37 37 H 1.08999 * 109.46987 * 299.99566 * 11 10 8
38 38 H 0.96697 * 113.99905 * 46.93468 * 13 12 11
39 39 H 1.09000 * 113.46738 * 105.37161 * 14 12 11
40 40 H 1.09001 * 113.46673 * 334.92458 * 14 12 11
41 41 H 0.97005 * 120.00046 * 179.97438 * 19 18 16
42 42 H 1.08998 * 113.46753 * 87.43633 * 24 15 14
43 43 H 1.09001 * 113.46791 * 217.88380 * 24 15 14
44 44 H 1.08005 * 119.89488 * 180.42123 * 25 7 6
45 45 H 1.07994 * 119.78596 * 180.02562 * 26 25 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9146 1.0198 0.0000
4 6 2.0779 -0.7923 -1.2105
5 6 3.3088 -1.4538 -0.6206
6 6 4.3968 -2.0569 -1.2020
7 6 5.4141 -2.5808 -0.3987
8 6 6.5852 -3.2354 -1.0140
9 8 6.6655 -3.3253 -2.2239
10 7 7.5655 -3.7336 -0.2348
11 6 8.7281 -4.3829 -0.8455
12 6 9.6838 -4.8550 0.2521
13 8 9.9343 -3.8617 1.2485
14 6 10.9458 -5.5550 -0.2705
15 7 10.8082 -6.5150 0.8351
16 6 11.6540 -7.3104 1.5613
17 1 12.7129 -7.3081 1.3489
18 6 11.1503 -8.1194 2.5706
19 7 9.8597 -8.1225 2.8292
20 14 12.3038 -9.2049 3.5608
21 1 12.7930 -8.4557 4.7460
22 1 11.5774 -10.4202 4.0087
23 1 13.4581 -9.6016 2.7150
24 6 9.3619 -6.2498 0.8132
25 6 5.3161 -2.4744 0.9913
26 6 4.2232 -1.8674 1.5631
27 6 3.2019 -1.3519 0.7634
28 8 2.0428 -0.7377 1.1222
29 1 -0.3634 -1.0260 0.0575
30 1 -0.3634 0.5628 0.8598
31 1 -0.3634 0.4633 -0.9174
32 1 2.3492 -0.1209 -2.0251
33 1 1.3580 -1.5385 -1.5465
34 1 4.4647 -2.1297 -2.2774
35 1 7.5016 -3.6616 0.7304
36 1 9.2420 -3.6729 -1.4936
37 1 8.3986 -5.2392 -1.4339
38 1 9.1370 -3.4230 1.5757
39 1 11.8432 -4.9401 -0.2023
40 1 10.8164 -6.0052 -1.2548
41 1 9.5077 -8.6882 3.5342
42 1 8.8150 -6.8830 0.1146
43 1 8.9098 -6.2267 1.8048
44 1 6.1013 -2.8706 1.6182
45 1 4.1546 -1.7886 2.6380
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001733506283.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 16:58:03
Heat of formation + Delta-G solvation = -21.532447 kcal
Electronic energy + Delta-G solvation = -27682.504675 eV
Core-core repulsion = 23667.854614 eV
Total energy + Delta-G solvation = -4014.650062 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 332.157 amu
Computer time = 2.30 seconds
Orbital eigenvalues (eV)
-41.58293 -40.02508 -38.81999 -37.29888 -35.06681 -34.06606 -33.58769 -32.08148
-31.57624 -30.64357 -28.65541 -27.09623 -25.99066 -24.79227 -23.70093 -22.28345
-22.13612 -21.90156 -20.49244 -19.41686 -18.27670 -17.92029 -17.15459 -16.72150
-16.17907 -15.82486 -15.50362 -15.31036 -14.85606 -14.54360 -14.41152 -13.99316
-13.96601 -13.74580 -13.61515 -13.38670 -13.34889 -13.19026 -12.82941 -12.79232
-12.62877 -12.43167 -12.24477 -11.85648 -11.71271 -11.20713 -11.09176 -11.02956
-10.91170 -10.71596 -10.45786 -10.10935 -9.80984 -9.51852 -9.27614 -9.19534
-8.91633 -8.84118 -8.47321 -6.91070 -5.78140 -3.10025 0.59519 1.00034
2.63038 2.82824 3.09359 3.39841 3.44109 3.46119 3.59862 3.98153
4.06373 4.41780 4.42911 4.46618 4.51037 4.62854 4.66400 4.76690
4.88428 4.97768 5.05945 5.13847 5.20374 5.20816 5.30818 5.36659
5.42339 5.57188 5.59123 5.67911 5.75255 5.83758 5.99185 5.99258
6.05979 6.16415 6.28914 6.38493 6.51765 6.53090 6.77923 6.97943
7.14244 7.43880 7.48355 7.94283 8.08481 8.20271 9.01871 9.68664
10.59353 11.39644
Molecular weight = 332.16amu
Principal moments of inertia in cm(-1)
A = 0.022668 B = 0.002183 C = 0.002057
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1234.942956 B =12820.466910 C =13608.400147
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.075 3.925
3 H 0.089 0.911
4 C -0.105 4.105
5 C -0.187 4.187
6 C -0.009 4.009
7 C -0.162 4.162
8 C 0.564 3.436
9 O -0.541 6.541
10 N -0.719 5.719
11 C 0.108 3.892
12 C 0.056 3.944
13 O -0.520 6.520
14 C 0.134 3.866
15 N -0.600 5.600
16 C -0.213 4.213
17 H 0.083 0.917
18 C -0.009 4.009
19 N -0.922 5.922
20 Si 0.915 3.085
21 H -0.288 1.288
22 H -0.290 1.290
23 H -0.281 1.281
24 C 0.136 3.864
25 C -0.047 4.047
26 C -0.144 4.144
27 C 0.132 3.868
28 O -0.299 6.299
29 H 0.068 0.932
30 H 0.069 0.931
31 H 0.080 0.920
32 H 0.094 0.906
33 H 0.093 0.907
34 H 0.139 0.861
35 H 0.397 0.603
36 H 0.073 0.927
37 H 0.082 0.918
38 H 0.359 0.641
39 H 0.052 0.948
40 H 0.050 0.950
41 H 0.253 0.747
42 H 0.034 0.966
43 H 0.077 0.923
44 H 0.138 0.862
45 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.614 18.039 -6.275 26.670
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C 0.020 3.980
3 H 0.107 0.893
4 C -0.142 4.142
5 C -0.188 4.188
6 C -0.028 4.028
7 C -0.165 4.165
8 C 0.352 3.648
9 O -0.420 6.420
10 N -0.372 5.372
11 C -0.016 4.016
12 C 0.013 3.987
13 O -0.324 6.324
14 C 0.007 3.993
15 N -0.325 5.325
16 C -0.340 4.340
17 H 0.100 0.900
18 C -0.205 4.205
19 N -0.569 5.569
20 Si 0.745 3.255
21 H -0.215 1.215
22 H -0.216 1.216
23 H -0.206 1.206
24 C 0.010 3.990
25 C -0.066 4.066
26 C -0.163 4.163
27 C 0.085 3.915
28 O -0.213 6.213
29 H 0.087 0.913
30 H 0.088 0.912
31 H 0.099 0.901
32 H 0.112 0.888
33 H 0.112 0.888
34 H 0.156 0.844
35 H 0.233 0.767
36 H 0.091 0.909
37 H 0.100 0.900
38 H 0.205 0.795
39 H 0.070 0.930
40 H 0.068 0.932
41 H 0.063 0.937
42 H 0.051 0.949
43 H 0.095 0.905
44 H 0.156 0.844
45 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -17.911 17.506 -6.766 25.943
hybrid contribution -0.089 -0.520 0.989 1.121
sum -17.999 16.986 -5.777 25.414
Atomic orbital electron populations
1.21891 0.91856 1.03703 1.03275 1.23439 0.95936 0.95474 0.83184
0.89324 1.21877 0.94497 0.99398 0.98411 1.20684 0.97999 1.06259
0.93875 1.20327 0.89815 0.92010 1.00628 1.19772 0.97241 1.05887
0.93601 1.18017 0.82111 0.78138 0.86563 1.90774 1.78909 1.58400
1.13874 1.45842 1.21649 1.59551 1.10205 1.21971 0.85271 0.97945
0.96459 1.23508 0.97430 0.89601 0.88201 1.86653 1.34130 1.53938
1.57646 1.22379 0.94332 0.89997 0.92557 1.45275 1.03306 1.48624
1.35263 1.18911 0.89060 1.15961 1.10071 0.89969 1.24790 0.96211
1.00199 0.99342 1.69809 1.10886 1.42598 1.33593 0.86070 0.79491
0.79777 0.80119 1.21486 1.21649 1.20634 1.22805 0.88035 0.88106
1.00063 1.21077 0.96802 0.95019 0.93669 1.20189 0.92149 1.03685
1.00244 1.19830 0.86327 0.92506 0.92792 1.86832 1.33916 1.62416
1.38123 0.91252 0.91209 0.90116 0.88796 0.88826 0.84363 0.76727
0.90853 0.90009 0.79522 0.93017 0.93234 0.93677 0.94859 0.90489
0.84410 0.84549
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.68 9.59 37.16 0.36 -0.32 16
2 C 0.08 0.50 4.25 -25.84 -0.11 0.39 16
3 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16
4 C -0.10 -0.71 6.65 -26.51 -0.18 -0.88 16
5 C -0.19 -1.84 6.26 -104.13 -0.65 -2.49 16
6 C -0.01 -0.10 9.58 -39.33 -0.38 -0.47 16
7 C -0.16 -1.90 5.88 -104.93 -0.62 -2.52 16
8 C 0.56 7.94 7.77 -12.44 -0.10 7.84 16
9 O -0.54 -9.35 16.36 5.29 0.09 -9.26 16
10 N -0.72 -9.40 5.29 -61.33 -0.32 -9.72 16
11 C 0.11 1.64 5.43 -4.04 -0.02 1.61 16
12 C 0.06 1.01 1.73 -89.97 -0.16 0.86 16
13 O -0.52 -9.43 13.56 -35.23 -0.48 -9.91 16
14 C 0.13 2.78 8.10 -8.50 -0.07 2.71 16
15 N -0.60 -15.54 3.78 -184.57 -0.70 -16.24 16
16 C -0.21 -6.06 10.75 -15.06 -0.16 -6.22 16
17 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16
18 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16
19 N -0.92 -27.35 11.50 55.49 0.64 -26.71 16
20 Si 0.92 22.33 29.55 -169.99 -5.02 17.30 16
21 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16
22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
24 C 0.14 3.12 6.85 -8.37 -0.06 3.06 16
25 C -0.05 -0.46 9.52 -39.29 -0.37 -0.83 16
26 C -0.14 -1.39 10.05 -39.36 -0.40 -1.78 16
27 C 0.13 1.36 7.04 -38.73 -0.27 1.09 16
28 O -0.30 -2.94 10.81 -19.74 -0.21 -3.15 16
29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16
30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16
31 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16
32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16
33 H 0.09 0.56 7.93 -51.93 -0.41 0.15 16
34 H 0.14 1.50 7.66 -52.48 -0.40 1.10 16
35 H 0.40 4.30 4.98 -40.82 -0.20 4.10 16
36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16
37 H 0.08 1.30 7.90 -51.93 -0.41 0.88 16
38 H 0.36 4.75 7.20 45.56 0.33 5.08 16
39 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16
40 H 0.05 0.94 8.10 -51.93 -0.42 0.52 16
41 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16
42 H 0.03 0.77 7.94 -51.93 -0.41 0.36 16
43 H 0.08 1.95 7.11 -51.93 -0.37 1.58 16
44 H 0.14 1.04 6.40 -52.48 -0.34 0.71 16
45 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16
LS Contribution 373.53 15.07 5.63 5.63
Total: -1.00 -35.78 373.53 -9.22 -45.00
By element:
Atomic # 1 Polarization: 10.95 SS G_CDS: -5.57 Total: 5.38 kcal
Atomic # 6 Polarization: 4.95 SS G_CDS: -3.28 Total: 1.68 kcal
Atomic # 7 Polarization: -52.29 SS G_CDS: -0.38 Total: -52.68 kcal
Atomic # 8 Polarization: -21.71 SS G_CDS: -0.60 Total: -22.32 kcal
Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal
Total LS contribution 5.63 Total: 5.63 kcal
Total: -35.78 -9.22 -45.00 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001733506283.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.469 kcal
(2) G-P(sol) polarization free energy of solvation -35.777 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.309 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.001 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.532 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.30 seconds