Wall clock time and date at job start Tue Mar 31 2020 16:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 110.66550 * 2 1 4 4 C 1.54700 * 110.74256 * 236.79185 * 2 1 3 5 5 C 1.51676 * 101.91797 * 216.19952 * 4 2 1 6 6 C 1.37309 * 132.06186 * 195.93275 * 5 4 2 7 7 C 1.39809 * 119.86293 * 179.27031 * 6 5 4 8 8 C 1.47600 * 120.26824 * 179.76994 * 7 6 5 9 9 O 1.21589 * 120.00052 * 359.72037 * 8 7 6 10 10 N 1.34777 * 120.00184 * 179.72416 * 8 7 6 11 11 C 1.46497 * 120.00057 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47190 * 179.97438 * 11 10 8 13 13 O 1.42902 * 113.28066 * 313.06652 * 12 11 10 14 14 C 1.53495 * 114.20485 * 179.97438 * 12 11 10 15 15 N 1.47069 * 87.98211 * 220.15073 * 14 12 11 16 16 C 1.36945 * 136.05451 * 207.08986 * 15 14 12 17 17 H 1.07999 * 120.00077 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99637 * 179.97438 * 16 15 14 19 19 N 1.31617 * 120.00227 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99854 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47118 * 90.00067 * 20 18 16 22 22 H 1.48499 * 109.47293 * 210.00071 * 20 18 16 23 23 H 1.48504 * 109.47104 * 330.00316 * 20 18 16 24 24 C 1.47061 * 87.88769 * 27.34318 * 15 14 12 25 25 C 1.39750 * 119.46389 * 359.49390 * 7 6 5 26 26 C 1.37476 * 120.20675 * 0.43701 * 25 7 6 27 27 C 1.39186 * 107.00556 * 15.15664 * 5 4 2 28 28 O 1.36000 * 111.15169 * 1.46044 * 27 5 4 29 29 H 1.08992 * 109.47427 * 183.20559 * 1 2 3 30 30 H 1.09000 * 109.47325 * 303.20758 * 1 2 3 31 31 H 1.09006 * 109.47194 * 63.20363 * 1 2 3 32 32 H 1.08999 * 110.94001 * 98.05107 * 4 2 1 33 33 H 1.08993 * 110.97299 * 334.36609 * 4 2 1 34 34 H 1.08004 * 120.06799 * 359.04060 * 6 5 4 35 35 H 0.96999 * 119.99984 * 359.97438 * 10 8 7 36 36 H 1.09001 * 109.47433 * 59.99575 * 11 10 8 37 37 H 1.08999 * 109.46987 * 299.99566 * 11 10 8 38 38 H 0.96697 * 113.99905 * 46.93468 * 13 12 11 39 39 H 1.09000 * 113.46738 * 105.37161 * 14 12 11 40 40 H 1.09001 * 113.46673 * 334.92458 * 14 12 11 41 41 H 0.97005 * 120.00046 * 179.97438 * 19 18 16 42 42 H 1.08998 * 113.46753 * 87.43633 * 24 15 14 43 43 H 1.09001 * 113.46791 * 217.88380 * 24 15 14 44 44 H 1.08005 * 119.89488 * 180.42123 * 25 7 6 45 45 H 1.07994 * 119.78596 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0198 0.0000 4 6 2.0779 -0.7923 -1.2105 5 6 3.3088 -1.4538 -0.6206 6 6 4.3968 -2.0569 -1.2020 7 6 5.4141 -2.5808 -0.3987 8 6 6.5852 -3.2354 -1.0140 9 8 6.6655 -3.3253 -2.2239 10 7 7.5655 -3.7336 -0.2348 11 6 8.7281 -4.3829 -0.8455 12 6 9.6838 -4.8550 0.2521 13 8 9.9343 -3.8617 1.2485 14 6 10.9458 -5.5550 -0.2705 15 7 10.8082 -6.5150 0.8351 16 6 11.6540 -7.3104 1.5613 17 1 12.7129 -7.3081 1.3489 18 6 11.1503 -8.1194 2.5706 19 7 9.8597 -8.1225 2.8292 20 14 12.3038 -9.2049 3.5608 21 1 12.7930 -8.4557 4.7460 22 1 11.5774 -10.4202 4.0087 23 1 13.4581 -9.6016 2.7150 24 6 9.3619 -6.2498 0.8132 25 6 5.3161 -2.4744 0.9913 26 6 4.2232 -1.8674 1.5631 27 6 3.2019 -1.3519 0.7634 28 8 2.0428 -0.7377 1.1222 29 1 -0.3634 -1.0260 0.0575 30 1 -0.3634 0.5628 0.8598 31 1 -0.3634 0.4633 -0.9174 32 1 2.3492 -0.1209 -2.0251 33 1 1.3580 -1.5385 -1.5465 34 1 4.4647 -2.1297 -2.2774 35 1 7.5016 -3.6616 0.7304 36 1 9.2420 -3.6729 -1.4936 37 1 8.3986 -5.2392 -1.4339 38 1 9.1370 -3.4230 1.5757 39 1 11.8432 -4.9401 -0.2023 40 1 10.8164 -6.0052 -1.2548 41 1 9.5077 -8.6882 3.5342 42 1 8.8150 -6.8830 0.1146 43 1 8.9098 -6.2267 1.8048 44 1 6.1013 -2.8706 1.6182 45 1 4.1546 -1.7886 2.6380 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733506283.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:03 Heat of formation + Delta-G solvation = -21.532447 kcal Electronic energy + Delta-G solvation = -27682.504675 eV Core-core repulsion = 23667.854614 eV Total energy + Delta-G solvation = -4014.650062 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -41.58293 -40.02508 -38.81999 -37.29888 -35.06681 -34.06606 -33.58769 -32.08148 -31.57624 -30.64357 -28.65541 -27.09623 -25.99066 -24.79227 -23.70093 -22.28345 -22.13612 -21.90156 -20.49244 -19.41686 -18.27670 -17.92029 -17.15459 -16.72150 -16.17907 -15.82486 -15.50362 -15.31036 -14.85606 -14.54360 -14.41152 -13.99316 -13.96601 -13.74580 -13.61515 -13.38670 -13.34889 -13.19026 -12.82941 -12.79232 -12.62877 -12.43167 -12.24477 -11.85648 -11.71271 -11.20713 -11.09176 -11.02956 -10.91170 -10.71596 -10.45786 -10.10935 -9.80984 -9.51852 -9.27614 -9.19534 -8.91633 -8.84118 -8.47321 -6.91070 -5.78140 -3.10025 0.59519 1.00034 2.63038 2.82824 3.09359 3.39841 3.44109 3.46119 3.59862 3.98153 4.06373 4.41780 4.42911 4.46618 4.51037 4.62854 4.66400 4.76690 4.88428 4.97768 5.05945 5.13847 5.20374 5.20816 5.30818 5.36659 5.42339 5.57188 5.59123 5.67911 5.75255 5.83758 5.99185 5.99258 6.05979 6.16415 6.28914 6.38493 6.51765 6.53090 6.77923 6.97943 7.14244 7.43880 7.48355 7.94283 8.08481 8.20271 9.01871 9.68664 10.59353 11.39644 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022668 B = 0.002183 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.942956 B =12820.466910 C =13608.400147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.075 3.925 3 H 0.089 0.911 4 C -0.105 4.105 5 C -0.187 4.187 6 C -0.009 4.009 7 C -0.162 4.162 8 C 0.564 3.436 9 O -0.541 6.541 10 N -0.719 5.719 11 C 0.108 3.892 12 C 0.056 3.944 13 O -0.520 6.520 14 C 0.134 3.866 15 N -0.600 5.600 16 C -0.213 4.213 17 H 0.083 0.917 18 C -0.009 4.009 19 N -0.922 5.922 20 Si 0.915 3.085 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.136 3.864 25 C -0.047 4.047 26 C -0.144 4.144 27 C 0.132 3.868 28 O -0.299 6.299 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.139 0.861 35 H 0.397 0.603 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.359 0.641 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.253 0.747 42 H 0.034 0.966 43 H 0.077 0.923 44 H 0.138 0.862 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.614 18.039 -6.275 26.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.020 3.980 3 H 0.107 0.893 4 C -0.142 4.142 5 C -0.188 4.188 6 C -0.028 4.028 7 C -0.165 4.165 8 C 0.352 3.648 9 O -0.420 6.420 10 N -0.372 5.372 11 C -0.016 4.016 12 C 0.013 3.987 13 O -0.324 6.324 14 C 0.007 3.993 15 N -0.325 5.325 16 C -0.340 4.340 17 H 0.100 0.900 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.745 3.255 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.010 3.990 25 C -0.066 4.066 26 C -0.163 4.163 27 C 0.085 3.915 28 O -0.213 6.213 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.156 0.844 35 H 0.233 0.767 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.205 0.795 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.095 0.905 44 H 0.156 0.844 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.911 17.506 -6.766 25.943 hybrid contribution -0.089 -0.520 0.989 1.121 sum -17.999 16.986 -5.777 25.414 Atomic orbital electron populations 1.21891 0.91856 1.03703 1.03275 1.23439 0.95936 0.95474 0.83184 0.89324 1.21877 0.94497 0.99398 0.98411 1.20684 0.97999 1.06259 0.93875 1.20327 0.89815 0.92010 1.00628 1.19772 0.97241 1.05887 0.93601 1.18017 0.82111 0.78138 0.86563 1.90774 1.78909 1.58400 1.13874 1.45842 1.21649 1.59551 1.10205 1.21971 0.85271 0.97945 0.96459 1.23508 0.97430 0.89601 0.88201 1.86653 1.34130 1.53938 1.57646 1.22379 0.94332 0.89997 0.92557 1.45275 1.03306 1.48624 1.35263 1.18911 0.89060 1.15961 1.10071 0.89969 1.24790 0.96211 1.00199 0.99342 1.69809 1.10886 1.42598 1.33593 0.86070 0.79491 0.79777 0.80119 1.21486 1.21649 1.20634 1.22805 0.88035 0.88106 1.00063 1.21077 0.96802 0.95019 0.93669 1.20189 0.92149 1.03685 1.00244 1.19830 0.86327 0.92506 0.92792 1.86832 1.33916 1.62416 1.38123 0.91252 0.91209 0.90116 0.88796 0.88826 0.84363 0.76727 0.90853 0.90009 0.79522 0.93017 0.93234 0.93677 0.94859 0.90489 0.84410 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.59 37.16 0.36 -0.32 16 2 C 0.08 0.50 4.25 -25.84 -0.11 0.39 16 3 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 4 C -0.10 -0.71 6.65 -26.51 -0.18 -0.88 16 5 C -0.19 -1.84 6.26 -104.13 -0.65 -2.49 16 6 C -0.01 -0.10 9.58 -39.33 -0.38 -0.47 16 7 C -0.16 -1.90 5.88 -104.93 -0.62 -2.52 16 8 C 0.56 7.94 7.77 -12.44 -0.10 7.84 16 9 O -0.54 -9.35 16.36 5.29 0.09 -9.26 16 10 N -0.72 -9.40 5.29 -61.33 -0.32 -9.72 16 11 C 0.11 1.64 5.43 -4.04 -0.02 1.61 16 12 C 0.06 1.01 1.73 -89.97 -0.16 0.86 16 13 O -0.52 -9.43 13.56 -35.23 -0.48 -9.91 16 14 C 0.13 2.78 8.10 -8.50 -0.07 2.71 16 15 N -0.60 -15.54 3.78 -184.57 -0.70 -16.24 16 16 C -0.21 -6.06 10.75 -15.06 -0.16 -6.22 16 17 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 18 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 19 N -0.92 -27.35 11.50 55.49 0.64 -26.71 16 20 Si 0.92 22.33 29.55 -169.99 -5.02 17.30 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C 0.14 3.12 6.85 -8.37 -0.06 3.06 16 25 C -0.05 -0.46 9.52 -39.29 -0.37 -0.83 16 26 C -0.14 -1.39 10.05 -39.36 -0.40 -1.78 16 27 C 0.13 1.36 7.04 -38.73 -0.27 1.09 16 28 O -0.30 -2.94 10.81 -19.74 -0.21 -3.15 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.56 7.93 -51.93 -0.41 0.15 16 34 H 0.14 1.50 7.66 -52.48 -0.40 1.10 16 35 H 0.40 4.30 4.98 -40.82 -0.20 4.10 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.08 1.30 7.90 -51.93 -0.41 0.88 16 38 H 0.36 4.75 7.20 45.56 0.33 5.08 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.94 8.10 -51.93 -0.42 0.52 16 41 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.03 0.77 7.94 -51.93 -0.41 0.36 16 43 H 0.08 1.95 7.11 -51.93 -0.37 1.58 16 44 H 0.14 1.04 6.40 -52.48 -0.34 0.71 16 45 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 373.53 15.07 5.63 5.63 Total: -1.00 -35.78 373.53 -9.22 -45.00 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -5.57 Total: 5.38 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -3.28 Total: 1.68 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.38 Total: -52.68 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.60 Total: -22.32 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.78 -9.22 -45.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733506283.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.469 kcal (2) G-P(sol) polarization free energy of solvation -35.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds