Wall clock time and date at job start Tue Mar 31 2020 16:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 110.66550 * 2 1 4 4 C 1.54700 * 110.74256 * 236.79185 * 2 1 3 5 5 C 1.51676 * 101.91797 * 216.19952 * 4 2 1 6 6 C 1.37309 * 132.06186 * 195.93275 * 5 4 2 7 7 C 1.39809 * 119.86293 * 179.27031 * 6 5 4 8 8 C 1.47600 * 120.26824 * 179.76994 * 7 6 5 9 9 O 1.21589 * 120.00052 * 359.72037 * 8 7 6 10 10 N 1.34777 * 120.00184 * 179.72416 * 8 7 6 11 11 C 1.46497 * 120.00057 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47190 * 179.97438 * 11 10 8 13 13 O 1.42902 * 113.28066 * 313.06652 * 12 11 10 14 14 C 1.53495 * 114.20485 * 179.97438 * 12 11 10 15 15 N 1.47069 * 87.98211 * 220.15073 * 14 12 11 16 16 C 1.36945 * 136.05451 * 207.08986 * 15 14 12 17 17 H 1.07999 * 120.00077 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99637 * 179.97438 * 16 15 14 19 19 N 1.31617 * 120.00227 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99854 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47118 * 90.00067 * 20 18 16 22 22 H 1.48499 * 109.47293 * 210.00071 * 20 18 16 23 23 H 1.48504 * 109.47104 * 330.00316 * 20 18 16 24 24 C 1.47061 * 87.88769 * 27.34318 * 15 14 12 25 25 C 1.39750 * 119.46389 * 359.49390 * 7 6 5 26 26 C 1.37476 * 120.20675 * 0.43701 * 25 7 6 27 27 C 1.39186 * 107.00556 * 15.15664 * 5 4 2 28 28 O 1.36000 * 111.15169 * 1.46044 * 27 5 4 29 29 H 1.08992 * 109.47427 * 183.20559 * 1 2 3 30 30 H 1.09000 * 109.47325 * 303.20758 * 1 2 3 31 31 H 1.09006 * 109.47194 * 63.20363 * 1 2 3 32 32 H 1.08999 * 110.94001 * 98.05107 * 4 2 1 33 33 H 1.08993 * 110.97299 * 334.36609 * 4 2 1 34 34 H 1.08004 * 120.06799 * 359.04060 * 6 5 4 35 35 H 0.96999 * 119.99984 * 359.97438 * 10 8 7 36 36 H 1.09001 * 109.47433 * 59.99575 * 11 10 8 37 37 H 1.08999 * 109.46987 * 299.99566 * 11 10 8 38 38 H 0.96697 * 113.99905 * 46.93468 * 13 12 11 39 39 H 1.09000 * 113.46738 * 105.37161 * 14 12 11 40 40 H 1.09001 * 113.46673 * 334.92458 * 14 12 11 41 41 H 0.97005 * 120.00046 * 179.97438 * 19 18 16 42 42 H 1.08998 * 113.46753 * 87.43633 * 24 15 14 43 43 H 1.09001 * 113.46791 * 217.88380 * 24 15 14 44 44 H 1.08005 * 119.89488 * 180.42123 * 25 7 6 45 45 H 1.07994 * 119.78596 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0198 0.0000 4 6 2.0779 -0.7923 -1.2105 5 6 3.3088 -1.4538 -0.6206 6 6 4.3968 -2.0569 -1.2020 7 6 5.4141 -2.5808 -0.3987 8 6 6.5852 -3.2354 -1.0140 9 8 6.6655 -3.3253 -2.2239 10 7 7.5655 -3.7336 -0.2348 11 6 8.7281 -4.3829 -0.8455 12 6 9.6838 -4.8550 0.2521 13 8 9.9343 -3.8617 1.2485 14 6 10.9458 -5.5550 -0.2705 15 7 10.8082 -6.5150 0.8351 16 6 11.6540 -7.3104 1.5613 17 1 12.7129 -7.3081 1.3489 18 6 11.1503 -8.1194 2.5706 19 7 9.8597 -8.1225 2.8292 20 14 12.3038 -9.2049 3.5608 21 1 12.7930 -8.4557 4.7460 22 1 11.5774 -10.4202 4.0087 23 1 13.4581 -9.6016 2.7150 24 6 9.3619 -6.2498 0.8132 25 6 5.3161 -2.4744 0.9913 26 6 4.2232 -1.8674 1.5631 27 6 3.2019 -1.3519 0.7634 28 8 2.0428 -0.7377 1.1222 29 1 -0.3634 -1.0260 0.0575 30 1 -0.3634 0.5628 0.8598 31 1 -0.3634 0.4633 -0.9174 32 1 2.3492 -0.1209 -2.0251 33 1 1.3580 -1.5385 -1.5465 34 1 4.4647 -2.1297 -2.2774 35 1 7.5016 -3.6616 0.7304 36 1 9.2420 -3.6729 -1.4936 37 1 8.3986 -5.2392 -1.4339 38 1 9.1370 -3.4230 1.5757 39 1 11.8432 -4.9401 -0.2023 40 1 10.8164 -6.0052 -1.2548 41 1 9.5077 -8.6882 3.5342 42 1 8.8150 -6.8830 0.1146 43 1 8.9098 -6.2267 1.8048 44 1 6.1013 -2.8706 1.6182 45 1 4.1546 -1.7886 2.6380 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733506283.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:01 Heat of formation + Delta-G solvation = -47.890860 kcal Electronic energy + Delta-G solvation = -27683.647662 eV Core-core repulsion = 23667.854614 eV Total energy + Delta-G solvation = -4015.793048 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.28886 -41.25383 -40.24846 -38.15480 -36.62762 -35.33922 -34.20795 -34.07580 -32.29812 -31.47243 -30.21291 -28.14589 -27.22705 -26.52819 -24.82162 -23.54772 -22.98671 -22.69732 -21.53716 -21.02722 -19.39514 -18.68799 -18.59042 -17.91557 -17.26601 -17.12370 -16.75386 -16.40677 -16.29160 -15.75782 -15.69157 -15.26229 -15.12837 -14.81853 -14.73414 -14.46942 -14.23963 -14.14854 -13.92714 -13.86136 -13.51930 -13.39748 -13.29690 -13.01616 -12.93717 -12.82897 -12.50043 -12.24510 -12.22031 -11.85753 -11.79534 -11.69038 -11.41954 -11.09444 -10.94729 -10.67856 -10.21818 -10.02687 -9.25063 -8.94580 -7.92014 -5.24842 -0.25076 0.24080 1.45299 1.47788 1.55978 1.71369 1.98872 2.16584 2.46064 2.72772 3.03776 3.29772 3.32654 3.37790 3.49620 3.56528 3.69424 3.80382 3.89293 4.00910 4.10572 4.14958 4.22293 4.38537 4.49971 4.64632 4.68799 4.72514 4.75227 4.77678 4.84973 4.89251 4.93411 5.05516 5.09581 5.15674 5.20026 5.22912 5.25172 5.25949 5.31435 5.46297 5.47618 5.90846 6.07646 6.38447 6.80998 6.89640 7.10450 7.57742 8.56421 9.25389 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022668 B = 0.002183 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.942956 B =12820.466910 C =13608.400147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.069 3.931 3 H 0.101 0.899 4 C -0.103 4.103 5 C -0.192 4.192 6 C -0.018 4.018 7 C -0.179 4.179 8 C 0.566 3.434 9 O -0.577 6.577 10 N -0.712 5.712 11 C 0.122 3.878 12 C 0.093 3.907 13 O -0.535 6.535 14 C 0.128 3.872 15 N -0.635 5.635 16 C -0.227 4.227 17 H 0.084 0.916 18 C -0.068 4.068 19 N -0.952 5.952 20 Si 0.982 3.018 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.269 1.269 24 C 0.134 3.866 25 C -0.042 4.042 26 C -0.150 4.150 27 C 0.124 3.876 28 O -0.314 6.314 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.134 0.866 35 H 0.408 0.592 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.381 0.619 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.249 0.751 42 H 0.028 0.972 43 H 0.047 0.953 44 H 0.158 0.842 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.269 19.446 -6.364 28.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 H 0.119 0.881 4 C -0.140 4.140 5 C -0.193 4.193 6 C -0.037 4.037 7 C -0.182 4.182 8 C 0.356 3.644 9 O -0.459 6.459 10 N -0.365 5.365 11 C -0.003 4.003 12 C 0.050 3.950 13 O -0.342 6.342 14 C 0.002 3.998 15 N -0.360 5.360 16 C -0.355 4.355 17 H 0.102 0.898 18 C -0.261 4.261 19 N -0.601 5.601 20 Si 0.810 3.190 21 H -0.212 1.212 22 H -0.219 1.219 23 H -0.194 1.194 24 C 0.007 3.993 25 C -0.061 4.061 26 C -0.168 4.168 27 C 0.077 3.923 28 O -0.228 6.228 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.130 0.870 33 H 0.119 0.881 34 H 0.152 0.848 35 H 0.246 0.754 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.230 0.770 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.045 0.955 43 H 0.065 0.935 44 H 0.176 0.824 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -18.576 18.955 -6.855 27.411 hybrid contribution 0.044 -0.868 1.006 1.329 sum -18.532 18.087 -5.850 26.548 Atomic orbital electron populations 1.21919 0.90283 1.03587 1.04574 1.23739 0.97169 0.95618 0.82038 0.88121 1.21992 0.93254 0.99761 0.98962 1.20956 0.98453 1.05750 0.94147 1.20374 0.90309 0.92535 1.00524 1.19659 0.96827 1.07219 0.94515 1.18323 0.82449 0.77540 0.86098 1.90751 1.79714 1.59965 1.15423 1.45704 1.20957 1.59084 1.10794 1.21681 0.85301 0.98194 0.95084 1.22915 0.96279 0.87652 0.88191 1.86602 1.36118 1.53611 1.57827 1.22619 0.95657 0.89272 0.92233 1.45635 1.04463 1.49119 1.36805 1.19292 0.89811 1.16057 1.10375 0.89819 1.25643 0.97808 1.01942 1.00719 1.69989 1.12464 1.43444 1.34160 0.85032 0.77800 0.77653 0.78550 1.21212 1.21942 1.19363 1.22808 0.86658 0.91156 0.98632 1.21261 0.97371 0.94465 0.92992 1.20447 0.91908 1.03271 1.01207 1.20100 0.86613 0.92361 0.93187 1.86824 1.33634 1.62613 1.39725 0.91927 0.90992 0.87867 0.86974 0.88051 0.84765 0.75392 0.89727 0.90465 0.76979 0.92751 0.91005 0.94245 0.95451 0.93451 0.82439 0.82862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.59 71.98 0.69 -0.32 16 2 C 0.07 0.78 4.25 31.17 0.13 0.91 16 3 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 4 C -0.10 -1.20 6.65 30.74 0.20 -1.00 16 5 C -0.19 -3.56 6.26 -19.54 -0.12 -3.69 16 6 C -0.02 -0.40 9.58 22.43 0.21 -0.18 16 7 C -0.18 -4.08 5.88 -20.06 -0.12 -4.20 16 8 C 0.57 15.56 7.77 86.71 0.67 16.23 16 9 O -0.58 -19.81 16.36 -3.99 -0.07 -19.88 16 10 N -0.71 -17.70 5.29 -466.20 -2.47 -20.17 16 11 C 0.12 3.54 5.43 86.38 0.47 4.01 16 12 C 0.09 3.28 1.73 -10.37 -0.02 3.27 16 13 O -0.54 -18.61 13.56 -148.98 -2.02 -20.63 16 14 C 0.13 5.18 8.10 83.18 0.67 5.85 16 15 N -0.63 -33.06 3.78 -738.35 -2.79 -35.85 16 16 C -0.23 -13.04 10.75 84.03 0.90 -12.13 16 17 H 0.08 4.60 7.83 -2.91 -0.02 4.58 16 18 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 19 N -0.95 -57.57 11.50 21.65 0.25 -57.32 16 20 Si 0.98 46.26 29.55 68.60 2.03 48.29 16 21 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 22 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 24 C 0.13 6.17 6.85 83.27 0.57 6.74 16 25 C -0.04 -0.77 9.52 22.46 0.21 -0.56 16 26 C -0.15 -2.68 10.05 22.41 0.23 -2.45 16 27 C 0.12 2.40 7.04 22.82 0.16 2.56 16 28 O -0.31 -5.72 10.81 -93.55 -1.01 -6.73 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.10 0.25 8.14 -2.38 -0.02 0.23 16 32 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.10 1.03 7.93 -2.39 -0.02 1.01 16 34 H 0.13 2.94 7.66 -2.91 -0.02 2.91 16 35 H 0.41 8.20 4.98 -92.71 -0.46 7.73 16 36 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.08 2.36 7.90 -2.39 -0.02 2.35 16 38 H 0.38 9.35 7.20 -74.06 -0.53 8.82 16 39 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.07 2.61 8.10 -2.39 -0.02 2.59 16 41 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 42 H 0.03 1.29 7.94 -2.39 -0.02 1.27 16 43 H 0.05 2.45 7.11 -2.39 -0.02 2.43 16 44 H 0.16 2.09 6.40 -2.91 -0.02 2.07 16 45 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -77.80 373.53 -0.70 -78.50 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.04 Total: 22.20 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 5.34 Total: 11.58 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -5.01 Total: -113.34 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: -3.10 Total: -47.24 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -77.80 -0.70 -78.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733506283.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.612 kcal (2) G-P(sol) polarization free energy of solvation -77.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds