Wall clock time and date at job start Tue Mar 31 2020 16:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.66096 * 2 1 4 4 C 1.54707 * 110.74126 * 123.19403 * 2 1 3 5 5 C 1.51672 * 101.87897 * 93.09540 * 4 2 1 6 6 C 1.37310 * 132.07298 * 195.76373 * 5 4 2 7 7 C 1.39806 * 119.86217 * 179.60692 * 6 5 4 8 8 C 1.47604 * 120.26994 * 179.97438 * 7 6 5 9 9 O 1.21582 * 119.99679 * 0.02694 * 8 7 6 10 10 N 1.34772 * 120.00135 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00116 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47572 * 180.02562 * 11 10 8 13 13 O 1.42901 * 112.94281 * 53.40786 * 12 11 10 14 14 C 1.53943 * 113.74026 * 281.67868 * 12 11 10 15 15 N 1.47579 * 86.11587 * 222.04200 * 14 12 11 16 16 C 1.36934 * 134.49462 * 204.63488 * 15 14 12 17 17 H 1.07999 * 120.00526 * 180.02562 * 16 15 14 18 18 C 1.38816 * 120.00068 * 0.02562 * 16 15 14 19 19 N 1.31622 * 119.99728 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00110 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47218 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46901 * 119.99742 * 20 18 16 23 23 H 1.48500 * 109.47259 * 239.99906 * 20 18 16 24 24 C 1.47580 * 91.01312 * 24.64104 * 15 14 12 25 25 C 1.39759 * 119.46575 * 359.97438 * 7 6 5 26 26 C 1.37471 * 120.19800 * 0.15117 * 25 7 6 27 27 C 1.39186 * 106.98932 * 15.71977 * 5 4 2 28 28 O 1.35990 * 111.19155 * 0.62163 * 27 5 4 29 29 H 1.09004 * 109.47529 * 296.80339 * 1 2 3 30 30 H 1.09003 * 109.47236 * 56.80784 * 1 2 3 31 31 H 1.09004 * 109.46858 * 176.80394 * 1 2 3 32 32 H 1.08997 * 110.94712 * 211.24501 * 4 2 1 33 33 H 1.09001 * 110.94799 * 334.94793 * 4 2 1 34 34 H 1.08001 * 120.06805 * 359.58015 * 6 5 4 35 35 H 0.97003 * 120.00246 * 0.02562 * 10 8 7 36 36 H 1.09000 * 109.47153 * 300.00270 * 11 10 8 37 37 H 1.09009 * 109.47071 * 60.00369 * 11 10 8 38 38 H 0.96704 * 113.99685 * 309.66821 * 13 12 11 39 39 H 1.09001 * 113.77391 * 336.34354 * 14 12 11 40 40 H 1.08999 * 113.76918 * 107.74486 * 14 12 11 41 41 H 0.97001 * 119.99838 * 180.02562 * 19 18 16 42 42 H 1.09000 * 113.76784 * 221.05154 * 24 15 14 43 43 H 1.09001 * 113.76580 * 89.66055 * 24 15 14 44 44 H 1.08000 * 119.89862 * 180.17998 * 25 7 6 45 45 H 1.08005 * 119.78185 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0779 -0.7921 1.2107 5 6 2.2634 -2.1766 0.6199 6 6 2.4471 -3.4075 1.2001 7 6 2.5854 -4.5426 0.3956 8 6 2.7838 -5.8700 1.0098 9 8 2.8271 -5.9796 2.2199 10 7 2.9170 -6.9606 0.2291 11 6 3.1134 -8.2781 0.8387 12 6 3.2353 -9.3356 -0.2604 13 8 4.2366 -9.0188 -1.2295 14 6 1.8856 -9.7510 -0.8732 15 7 2.4026 -11.1324 -0.8242 16 6 2.1354 -12.2823 -1.5181 17 1 2.6683 -13.1916 -1.2823 18 6 1.1795 -12.2793 -2.5247 19 7 0.5296 -11.1713 -2.8118 20 14 0.8154 -13.8478 -3.4717 21 1 1.6743 -14.9458 -2.9598 22 1 -0.6129 -14.2132 -3.2937 23 1 1.0950 -13.6313 -4.9140 24 6 3.3231 -10.7769 0.2732 25 6 2.5342 -4.4102 -0.9947 26 6 2.3524 -3.1728 -1.5653 27 6 2.2192 -2.0374 -0.7643 28 8 2.0427 -0.7374 -1.1222 29 1 -0.3634 0.4634 0.9173 30 1 -0.3634 0.5626 -0.8600 31 1 -0.3633 -1.0261 -0.0573 32 1 3.0298 -0.3810 1.5468 33 1 1.3535 -0.8097 2.0250 34 1 2.4852 -3.4985 2.2756 35 1 2.8828 -6.8731 -0.7363 36 1 4.0245 -8.2696 1.4368 37 1 2.2618 -8.5137 1.4771 38 1 4.1669 -8.1237 -1.5888 39 1 1.0329 -9.5774 -0.2168 40 1 1.7285 -9.3764 -1.8847 41 1 -0.1386 -11.1693 -3.5149 42 1 4.3137 -11.2214 0.1771 43 1 2.8927 -10.9047 1.2664 44 1 2.6372 -5.2828 -1.6227 45 1 2.3134 -3.0783 -2.6405 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733506284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:13 Heat of formation + Delta-G solvation = -26.834796 kcal Electronic energy + Delta-G solvation = -27858.310091 eV Core-core repulsion = 23843.430102 eV Total energy + Delta-G solvation = -4014.879989 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 5.50 seconds Orbital eigenvalues (eV) -41.63514 -39.99500 -38.72932 -37.26491 -34.94543 -34.09258 -33.53442 -32.02145 -31.31671 -30.65098 -28.57319 -27.21128 -26.02286 -25.01350 -23.73275 -22.42429 -21.98607 -21.84568 -20.44291 -19.35736 -18.24524 -17.51936 -17.02771 -16.69577 -16.40568 -15.80121 -15.66255 -15.24821 -14.91682 -14.52779 -14.43641 -14.04690 -13.96175 -13.81158 -13.63151 -13.30474 -13.28276 -12.91551 -12.84107 -12.70331 -12.62448 -12.46180 -12.25869 -11.78653 -11.63372 -11.20557 -11.07643 -11.06721 -10.94479 -10.76147 -10.42411 -10.08885 -9.76667 -9.52279 -9.25872 -9.24664 -8.97636 -8.83331 -8.45787 -6.90690 -5.78141 -3.09736 0.61206 1.01742 2.64456 2.88457 3.12605 3.39211 3.44496 3.46996 3.62236 3.96989 4.13880 4.40984 4.42743 4.47634 4.51326 4.64442 4.69150 4.78978 4.90007 4.99847 5.10874 5.15044 5.21089 5.27597 5.29149 5.37713 5.40717 5.57192 5.66028 5.69271 5.74735 5.85685 6.00857 6.01002 6.07898 6.17811 6.28811 6.40276 6.52321 6.55644 6.79344 7.00133 7.15396 7.46786 7.49379 7.95228 8.09846 8.21444 9.02995 9.69257 10.55175 11.39281 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019659 B = 0.002319 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.951603 B =12072.407036 C =12910.216625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.076 3.924 3 H 0.117 0.883 4 C -0.105 4.105 5 C -0.186 4.186 6 C -0.009 4.009 7 C -0.162 4.162 8 C 0.564 3.436 9 O -0.542 6.542 10 N -0.719 5.719 11 C 0.103 3.897 12 C 0.063 3.937 13 O -0.525 6.525 14 C 0.144 3.856 15 N -0.603 5.603 16 C -0.217 4.217 17 H 0.082 0.918 18 C -0.009 4.009 19 N -0.923 5.923 20 Si 0.914 3.086 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.136 3.864 25 C -0.047 4.047 26 C -0.145 4.145 27 C 0.131 3.869 28 O -0.297 6.297 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.138 0.862 35 H 0.398 0.602 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.361 0.639 39 H 0.034 0.966 40 H 0.078 0.922 41 H 0.252 0.748 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.138 0.862 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.680 24.502 6.067 25.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.020 3.980 3 H 0.135 0.865 4 C -0.142 4.142 5 C -0.187 4.187 6 C -0.028 4.028 7 C -0.165 4.165 8 C 0.351 3.649 9 O -0.421 6.421 10 N -0.371 5.371 11 C -0.021 4.021 12 C 0.020 3.980 13 O -0.329 6.329 14 C 0.018 3.982 15 N -0.328 5.328 16 C -0.345 4.345 17 H 0.099 0.901 18 C -0.205 4.205 19 N -0.570 5.570 20 Si 0.744 3.256 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.010 3.990 25 C -0.066 4.066 26 C -0.163 4.163 27 C 0.085 3.915 28 O -0.211 6.211 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.156 0.844 35 H 0.233 0.767 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.207 0.793 39 H 0.052 0.948 40 H 0.096 0.904 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.156 0.844 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.779 23.663 6.607 24.725 hybrid contribution -0.637 -0.207 -0.980 1.187 sum 2.142 23.456 5.627 24.216 Atomic orbital electron populations 1.22265 0.93924 1.03578 1.03236 1.23470 0.94930 0.96399 0.83182 0.86508 1.21874 1.02892 0.90965 0.98467 1.20658 1.08776 0.95412 0.93817 1.20319 0.92850 0.89057 1.00603 1.19775 1.09457 0.93679 0.93589 1.18025 0.76465 0.83819 0.86566 1.90769 1.50913 1.86494 1.13878 1.45835 1.73753 1.07357 1.10201 1.22081 1.02434 0.80861 0.96748 1.23769 0.92144 0.93719 0.88384 1.86629 1.52378 1.35091 1.58772 1.22901 0.90532 0.84899 0.99854 1.45669 1.43434 1.07394 1.36339 1.19045 1.17261 0.87063 1.11115 0.90054 1.24774 0.98805 0.97569 0.99396 1.69808 1.28164 1.25528 1.33517 0.86016 0.77689 0.82212 0.79662 1.20435 1.21785 1.21695 1.22552 0.95441 0.88548 0.92503 1.21082 0.94791 0.97019 0.93689 1.20196 1.06886 0.89018 1.00225 1.19846 0.93855 0.85011 0.92779 1.86854 1.79244 1.16671 1.38307 0.90475 0.91225 0.91615 0.88909 0.88687 0.84406 0.76674 0.90953 0.90110 0.79328 0.94788 0.90380 0.93753 0.92617 0.93184 0.84408 0.84591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 9.51 37.16 0.35 -0.63 16 2 C 0.08 0.49 4.30 -25.83 -0.11 0.38 16 3 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.10 -0.70 6.65 -26.51 -0.18 -0.88 16 5 C -0.19 -1.82 6.25 -104.13 -0.65 -2.47 16 6 C -0.01 -0.10 9.58 -39.33 -0.38 -0.48 16 7 C -0.16 -1.92 5.88 -104.92 -0.62 -2.53 16 8 C 0.56 8.00 7.77 -12.44 -0.10 7.90 16 9 O -0.54 -9.43 16.36 5.29 0.09 -9.34 16 10 N -0.72 -9.47 5.29 -61.33 -0.32 -9.80 16 11 C 0.10 1.57 5.28 -4.04 -0.02 1.55 16 12 C 0.06 1.14 1.52 -89.70 -0.14 1.00 16 13 O -0.53 -9.43 13.51 -35.23 -0.48 -9.91 16 14 C 0.14 3.26 6.92 -2.98 -0.02 3.24 16 15 N -0.60 -15.50 3.70 -177.82 -0.66 -16.16 16 16 C -0.22 -6.16 10.70 -15.06 -0.16 -6.32 16 17 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 19 N -0.92 -27.14 11.38 55.49 0.63 -26.50 16 20 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 24 C 0.14 2.80 8.34 -2.98 -0.02 2.78 16 25 C -0.05 -0.47 9.52 -39.29 -0.37 -0.84 16 26 C -0.14 -1.41 10.05 -39.36 -0.40 -1.80 16 27 C 0.13 1.35 6.93 -38.73 -0.27 1.08 16 28 O -0.30 -2.89 10.81 -19.71 -0.21 -3.10 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.51 7.92 -51.93 -0.41 0.09 16 34 H 0.14 1.51 7.66 -52.49 -0.40 1.11 16 35 H 0.40 4.38 5.34 -40.82 -0.22 4.16 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.08 1.29 8.05 -51.92 -0.42 0.88 16 38 H 0.36 4.78 7.61 45.56 0.35 5.13 16 39 H 0.03 0.79 8.03 -51.93 -0.42 0.37 16 40 H 0.08 1.94 7.15 -51.93 -0.37 1.57 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.05 0.95 8.10 -51.93 -0.42 0.52 16 44 H 0.14 1.08 6.40 -52.49 -0.34 0.74 16 45 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 374.02 15.07 5.64 5.64 Total: -1.00 -35.48 374.02 -9.09 -44.56 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -5.57 Total: 5.75 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -3.17 Total: 1.62 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.35 Total: -52.46 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.60 Total: -22.36 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.48 -9.09 -44.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733506284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.727 kcal (2) G-P(sol) polarization free energy of solvation -35.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.50 seconds