Wall clock time and date at job start Tue Mar 31 2020 16:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.66096 * 2 1 4 4 C 1.54707 * 110.74126 * 123.19403 * 2 1 3 5 5 C 1.51672 * 101.87897 * 93.09540 * 4 2 1 6 6 C 1.37310 * 132.07298 * 195.76373 * 5 4 2 7 7 C 1.39806 * 119.86217 * 179.60692 * 6 5 4 8 8 C 1.47604 * 120.26994 * 179.97438 * 7 6 5 9 9 O 1.21582 * 119.99679 * 0.02694 * 8 7 6 10 10 N 1.34772 * 120.00135 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00116 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47572 * 180.02562 * 11 10 8 13 13 O 1.42901 * 112.94281 * 53.40786 * 12 11 10 14 14 C 1.53943 * 113.74026 * 281.67868 * 12 11 10 15 15 N 1.47579 * 86.11587 * 222.04200 * 14 12 11 16 16 C 1.36934 * 134.49462 * 204.63488 * 15 14 12 17 17 H 1.07999 * 120.00526 * 180.02562 * 16 15 14 18 18 C 1.38816 * 120.00068 * 0.02562 * 16 15 14 19 19 N 1.31622 * 119.99728 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00110 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47218 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46901 * 119.99742 * 20 18 16 23 23 H 1.48500 * 109.47259 * 239.99906 * 20 18 16 24 24 C 1.47580 * 91.01312 * 24.64104 * 15 14 12 25 25 C 1.39759 * 119.46575 * 359.97438 * 7 6 5 26 26 C 1.37471 * 120.19800 * 0.15117 * 25 7 6 27 27 C 1.39186 * 106.98932 * 15.71977 * 5 4 2 28 28 O 1.35990 * 111.19155 * 0.62163 * 27 5 4 29 29 H 1.09004 * 109.47529 * 296.80339 * 1 2 3 30 30 H 1.09003 * 109.47236 * 56.80784 * 1 2 3 31 31 H 1.09004 * 109.46858 * 176.80394 * 1 2 3 32 32 H 1.08997 * 110.94712 * 211.24501 * 4 2 1 33 33 H 1.09001 * 110.94799 * 334.94793 * 4 2 1 34 34 H 1.08001 * 120.06805 * 359.58015 * 6 5 4 35 35 H 0.97003 * 120.00246 * 0.02562 * 10 8 7 36 36 H 1.09000 * 109.47153 * 300.00270 * 11 10 8 37 37 H 1.09009 * 109.47071 * 60.00369 * 11 10 8 38 38 H 0.96704 * 113.99685 * 309.66821 * 13 12 11 39 39 H 1.09001 * 113.77391 * 336.34354 * 14 12 11 40 40 H 1.08999 * 113.76918 * 107.74486 * 14 12 11 41 41 H 0.97001 * 119.99838 * 180.02562 * 19 18 16 42 42 H 1.09000 * 113.76784 * 221.05154 * 24 15 14 43 43 H 1.09001 * 113.76580 * 89.66055 * 24 15 14 44 44 H 1.08000 * 119.89862 * 180.17998 * 25 7 6 45 45 H 1.08005 * 119.78185 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0779 -0.7921 1.2107 5 6 2.2634 -2.1766 0.6199 6 6 2.4471 -3.4075 1.2001 7 6 2.5854 -4.5426 0.3956 8 6 2.7838 -5.8700 1.0098 9 8 2.8271 -5.9796 2.2199 10 7 2.9170 -6.9606 0.2291 11 6 3.1134 -8.2781 0.8387 12 6 3.2353 -9.3356 -0.2604 13 8 4.2366 -9.0188 -1.2295 14 6 1.8856 -9.7510 -0.8732 15 7 2.4026 -11.1324 -0.8242 16 6 2.1354 -12.2823 -1.5181 17 1 2.6683 -13.1916 -1.2823 18 6 1.1795 -12.2793 -2.5247 19 7 0.5296 -11.1713 -2.8118 20 14 0.8154 -13.8478 -3.4717 21 1 1.6743 -14.9458 -2.9598 22 1 -0.6129 -14.2132 -3.2937 23 1 1.0950 -13.6313 -4.9140 24 6 3.3231 -10.7769 0.2732 25 6 2.5342 -4.4102 -0.9947 26 6 2.3524 -3.1728 -1.5653 27 6 2.2192 -2.0374 -0.7643 28 8 2.0427 -0.7374 -1.1222 29 1 -0.3634 0.4634 0.9173 30 1 -0.3634 0.5626 -0.8600 31 1 -0.3633 -1.0261 -0.0573 32 1 3.0298 -0.3810 1.5468 33 1 1.3535 -0.8097 2.0250 34 1 2.4852 -3.4985 2.2756 35 1 2.8828 -6.8731 -0.7363 36 1 4.0245 -8.2696 1.4368 37 1 2.2618 -8.5137 1.4771 38 1 4.1669 -8.1237 -1.5888 39 1 1.0329 -9.5774 -0.2168 40 1 1.7285 -9.3764 -1.8847 41 1 -0.1386 -11.1693 -3.5149 42 1 4.3137 -11.2214 0.1771 43 1 2.8927 -10.9047 1.2664 44 1 2.6372 -5.2828 -1.6227 45 1 2.3134 -3.0783 -2.6405 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733506284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:09 Heat of formation + Delta-G solvation = -52.885974 kcal Electronic energy + Delta-G solvation = -27859.439754 eV Core-core repulsion = 23843.430102 eV Total energy + Delta-G solvation = -4016.009653 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.33542 -41.20886 -40.16957 -38.13216 -36.52064 -35.36760 -34.17578 -34.00664 -32.06871 -31.47718 -30.12562 -28.12399 -27.39436 -26.73651 -24.84141 -23.51255 -23.15097 -22.57054 -21.49397 -20.95610 -19.34721 -18.69214 -18.23328 -17.81970 -17.29575 -17.16495 -16.66762 -16.60994 -16.35904 -15.76958 -15.71703 -15.21865 -15.12043 -14.76518 -14.66442 -14.53977 -14.43946 -14.09707 -13.88818 -13.65240 -13.59598 -13.39380 -13.21146 -13.00952 -12.94455 -12.85540 -12.55210 -12.18683 -12.15242 -11.84687 -11.77939 -11.76591 -11.45906 -11.06267 -10.97249 -10.72497 -10.22320 -10.01148 -9.23661 -8.93283 -7.91097 -5.23620 -0.23933 0.25211 1.45775 1.46616 1.56851 1.72101 2.00321 2.21825 2.46421 2.74740 3.05581 3.28390 3.33955 3.39298 3.50974 3.58988 3.71272 3.83234 3.88460 3.94629 4.10705 4.16077 4.27290 4.37410 4.47512 4.62999 4.69413 4.74340 4.78054 4.78897 4.82083 4.89722 4.95779 5.04200 5.10607 5.17432 5.21297 5.22338 5.26274 5.27321 5.33266 5.45994 5.49883 5.92414 6.08610 6.40259 6.82223 6.91914 7.11114 7.59279 8.52625 9.25673 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019659 B = 0.002319 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.951603 B =12072.407036 C =12910.216625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.071 3.929 3 H 0.144 0.856 4 C -0.103 4.103 5 C -0.190 4.190 6 C -0.019 4.019 7 C -0.179 4.179 8 C 0.566 3.434 9 O -0.578 6.578 10 N -0.712 5.712 11 C 0.118 3.882 12 C 0.098 3.902 13 O -0.539 6.539 14 C 0.143 3.857 15 N -0.636 5.636 16 C -0.232 4.232 17 H 0.082 0.918 18 C -0.067 4.067 19 N -0.951 5.951 20 Si 0.979 3.021 21 H -0.267 1.267 22 H -0.292 1.292 23 H -0.291 1.291 24 C 0.130 3.870 25 C -0.043 4.043 26 C -0.152 4.152 27 C 0.125 3.875 28 O -0.311 6.311 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.134 0.866 35 H 0.409 0.591 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.382 0.618 39 H 0.026 0.974 40 H 0.051 0.949 41 H 0.248 0.752 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.157 0.843 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.207 25.931 6.137 26.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.016 3.984 3 H 0.161 0.839 4 C -0.140 4.140 5 C -0.191 4.191 6 C -0.038 4.038 7 C -0.183 4.183 8 C 0.355 3.645 9 O -0.460 6.460 10 N -0.364 5.364 11 C -0.007 4.007 12 C 0.055 3.945 13 O -0.345 6.345 14 C 0.017 3.983 15 N -0.363 5.363 16 C -0.360 4.360 17 H 0.100 0.900 18 C -0.260 4.260 19 N -0.600 5.600 20 Si 0.808 3.192 21 H -0.191 1.191 22 H -0.219 1.219 23 H -0.218 1.218 24 C 0.004 3.996 25 C -0.062 4.062 26 C -0.170 4.170 27 C 0.078 3.922 28 O -0.225 6.225 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.152 0.848 35 H 0.246 0.754 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.232 0.768 39 H 0.044 0.956 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.174 0.826 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.330 25.120 6.676 26.205 hybrid contribution -0.784 -0.546 -0.994 1.379 sum 2.546 24.574 5.682 25.351 Atomic orbital electron populations 1.22277 0.93476 1.02561 1.04502 1.23790 0.95363 0.97210 0.82013 0.83851 1.22002 1.04079 0.89021 0.98904 1.20937 1.07799 0.96236 0.94087 1.20366 0.93416 0.89579 1.00473 1.19659 1.11526 0.92585 0.94484 1.18338 0.75476 0.84565 0.86102 1.90745 1.52743 1.87059 1.15423 1.45701 1.73468 1.06493 1.10775 1.21778 1.02726 0.80824 0.95362 1.23143 0.89303 0.93702 0.88337 1.86579 1.51800 1.37185 1.58953 1.22847 0.92692 0.84158 0.98570 1.46058 1.44694 1.07657 1.37855 1.19405 1.17021 0.88203 1.11406 0.90034 1.25601 0.99118 1.00642 1.00643 1.69979 1.28697 1.27266 1.34039 0.84999 0.77287 0.79012 0.77948 1.19150 1.21888 1.21794 1.22795 0.94695 0.89828 0.92257 1.21249 0.93989 0.97907 0.93023 1.20447 1.06519 0.88858 1.01173 1.20099 0.93391 0.85531 0.93148 1.86843 1.79305 1.16425 1.39878 0.88390 0.90937 0.93595 0.87562 0.87245 0.84841 0.75372 0.89924 0.90668 0.76849 0.95606 0.93064 0.94266 0.92335 0.90975 0.82585 0.82981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 9.51 71.98 0.68 -0.94 16 2 C 0.07 0.76 4.30 31.18 0.13 0.89 16 3 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 4 C -0.10 -1.17 6.65 30.74 0.20 -0.96 16 5 C -0.19 -3.51 6.25 -19.54 -0.12 -3.63 16 6 C -0.02 -0.42 9.58 22.43 0.21 -0.21 16 7 C -0.18 -4.16 5.88 -20.06 -0.12 -4.28 16 8 C 0.57 15.79 7.77 86.72 0.67 16.47 16 9 O -0.58 -20.10 16.36 -3.97 -0.07 -20.17 16 10 N -0.71 -18.02 5.29 -466.21 -2.46 -20.49 16 11 C 0.12 3.45 5.28 86.38 0.46 3.91 16 12 C 0.10 3.47 1.52 -10.14 -0.02 3.45 16 13 O -0.54 -18.59 13.51 -148.98 -2.01 -20.60 16 14 C 0.14 6.54 6.92 86.48 0.60 7.14 16 15 N -0.64 -32.90 3.70 -720.35 -2.66 -35.56 16 16 C -0.23 -13.24 10.70 84.03 0.90 -12.34 16 17 H 0.08 4.49 7.83 -2.91 -0.02 4.46 16 18 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 19 N -0.95 -56.91 11.38 21.65 0.25 -56.66 16 20 Si 0.98 46.15 29.55 68.60 2.03 48.18 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 24 C 0.13 5.22 8.34 86.48 0.72 5.94 16 25 C -0.04 -0.81 9.52 22.46 0.21 -0.59 16 26 C -0.15 -2.76 10.05 22.42 0.23 -2.54 16 27 C 0.12 2.42 6.93 22.82 0.16 2.57 16 28 O -0.31 -5.54 10.81 -93.44 -1.01 -6.55 16 29 H 0.10 0.51 8.14 -2.38 -0.02 0.50 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.04 0.62 8.09 -2.38 -0.02 0.61 16 32 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.11 0.92 7.92 -2.39 -0.02 0.90 16 34 H 0.13 2.96 7.66 -2.91 -0.02 2.94 16 35 H 0.41 8.47 5.34 -92.71 -0.50 7.98 16 36 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.08 2.34 8.05 -2.38 -0.02 2.32 16 38 H 0.38 9.44 7.61 -74.05 -0.56 8.88 16 39 H 0.03 1.22 8.03 -2.39 -0.02 1.20 16 40 H 0.05 2.60 7.15 -2.39 -0.02 2.59 16 41 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 42 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.07 2.61 8.10 -2.39 -0.02 2.59 16 44 H 0.16 2.19 6.40 -2.91 -0.02 2.17 16 45 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -77.05 374.02 -0.57 -77.62 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -0.03 Total: 22.71 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 5.40 Total: 11.51 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -4.88 Total: -112.71 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -3.09 Total: -47.31 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -77.05 -0.57 -77.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733506284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.732 kcal (2) G-P(sol) polarization free energy of solvation -77.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds