Wall clock time and date at job start Tue Mar 31 2020 17:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.74051 * 2 1 4 4 O 1.43258 * 109.77436 * 120.62334 * 2 1 3 5 5 C 1.36111 * 116.71420 * 165.92060 * 4 2 1 6 6 C 1.38700 * 119.39038 * 162.82354 * 5 4 2 7 7 C 1.38193 * 120.06963 * 179.85743 * 6 5 4 8 8 C 1.38256 * 120.10985 * 359.96658 * 7 6 5 9 9 C 1.38198 * 120.11430 * 0.05832 * 8 7 6 10 10 C 1.38705 * 120.06540 * 0.02562 * 9 8 7 11 11 O 1.36112 * 119.39665 * 179.80236 * 10 9 8 12 12 C 1.43170 * 116.71808 * 162.94375 * 11 10 9 13 13 H 1.08998 * 109.70811 * 165.86653 * 12 11 10 14 14 C 1.50700 * 109.70606 * 286.44475 * 12 11 10 15 15 O 1.21280 * 120.00265 * 12.74567 * 14 12 11 16 16 N 1.34782 * 119.99963 * 192.74432 * 14 12 11 17 17 C 1.46496 * 120.00040 * 174.93616 * 16 14 12 18 18 C 1.52996 * 109.47372 * 185.10484 * 17 16 14 19 19 N 1.46501 * 115.56133 * 279.91235 * 18 17 16 20 20 C 1.36938 * 119.99950 * 320.09079 * 19 18 17 21 21 H 1.07996 * 119.99780 * 3.01924 * 20 19 18 22 22 C 1.38807 * 119.99929 * 183.01658 * 20 19 18 23 23 N 1.31622 * 120.00102 * 5.39345 * 22 20 19 24 24 Si 1.86800 * 119.99903 * 185.39625 * 22 20 19 25 25 H 1.48507 * 109.47345 * 94.98175 * 24 22 20 26 26 H 1.48501 * 109.47295 * 214.98131 * 24 22 20 27 27 H 1.48494 * 109.47191 * 334.98509 * 24 22 20 28 28 C 1.52999 * 117.49661 * 65.59568 * 18 17 16 29 29 C 1.53004 * 60.03315 * 107.50573 * 28 18 17 30 30 H 1.08997 * 109.47010 * 187.59447 * 1 2 3 31 31 H 1.08995 * 109.47397 * 307.59643 * 1 2 3 32 32 H 1.09006 * 109.47132 * 67.59677 * 1 2 3 33 33 H 1.07999 * 119.96367 * 359.83069 * 6 5 4 34 34 H 1.07997 * 119.94559 * 179.97438 * 7 6 5 35 35 H 1.07995 * 119.94354 * 180.02562 * 8 7 6 36 36 H 1.08003 * 119.96624 * 180.02562 * 9 8 7 37 37 H 0.97002 * 119.99752 * 354.93538 * 16 14 12 38 38 H 1.09000 * 109.47351 * 65.10444 * 17 16 14 39 39 H 1.08997 * 109.47498 * 305.10495 * 17 16 14 40 40 H 0.97003 * 119.99964 * 140.09511 * 19 18 17 41 41 H 0.97005 * 119.99560 * 180.02562 * 23 22 20 42 42 H 1.08994 * 117.50330 * 0.02562 * 28 18 17 43 43 H 1.09009 * 117.49906 * 215.00334 * 28 18 17 44 44 H 1.08999 * 117.49931 * 107.47259 * 29 28 18 45 45 H 1.08997 * 117.49724 * 252.47572 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 8 2.0147 -0.6867 1.1601 5 6 3.3315 -1.0313 1.1616 6 6 3.9468 -1.3633 2.3594 7 6 5.2823 -1.7181 2.3768 8 6 6.0084 -1.7439 1.2005 9 6 5.4015 -1.4138 0.0036 10 6 4.0619 -1.0550 -0.0205 11 8 3.4789 -0.7285 -1.2063 12 6 2.0477 -0.7355 -1.2434 13 1 1.7009 -0.2264 -2.1427 14 6 1.5461 -2.1566 -1.2386 15 8 2.3039 -3.0662 -0.9756 16 7 0.2554 -2.4166 -1.5265 17 6 -0.2069 -3.8028 -1.6309 18 6 -1.6670 -3.8205 -2.0877 19 7 -2.6599 -3.5642 -1.0415 20 6 -2.4936 -4.1021 0.2068 21 1 -1.6066 -4.6746 0.4343 22 6 -3.4651 -3.9114 1.1798 23 7 -4.5929 -3.3057 0.8738 24 14 -3.1718 -4.5144 2.9233 25 1 -2.6325 -3.4029 3.7474 26 1 -4.4536 -4.9859 3.5062 27 1 -2.1961 -5.6336 2.9024 28 6 -1.9733 -3.3026 -3.4944 29 6 -2.0485 -4.8019 -3.1989 30 1 -0.3633 -1.0186 0.1358 31 1 -0.3634 0.6269 0.8142 32 1 -0.3634 0.3917 -0.9502 33 1 3.3818 -1.3440 3.2796 34 1 5.7596 -1.9758 3.3107 35 1 7.0518 -2.0220 1.2171 36 1 5.9709 -1.4351 -0.9139 37 1 -0.3675 -1.6859 -1.6645 38 1 -0.1248 -4.2875 -0.6580 39 1 0.4071 -4.3370 -2.3559 40 1 -3.4351 -3.0135 -1.2330 41 1 -5.2716 -3.1722 1.5539 42 1 -1.1347 -2.9497 -4.0946 43 1 -2.9135 -2.7708 -3.6414 44 1 -3.0380 -5.2564 -3.1508 45 1 -1.2595 -5.4350 -3.6047 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754533695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:20 Heat of formation + Delta-G solvation = -31.819829 kcal Electronic energy + Delta-G solvation = -29641.023444 eV Core-core repulsion = 25625.927288 eV Total energy + Delta-G solvation = -4015.096156 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.71720 -39.29031 -37.81257 -37.51153 -37.03014 -34.22389 -33.17583 -32.62359 -30.70073 -29.81145 -29.09582 -27.97073 -26.10060 -23.96345 -23.65579 -22.69130 -22.10282 -21.56324 -19.98265 -19.12842 -18.85656 -17.93182 -17.28333 -16.96871 -16.45794 -15.85918 -15.53865 -15.14913 -15.04944 -14.76027 -14.38507 -14.27849 -13.98369 -13.82883 -13.66036 -13.57257 -13.12634 -12.96956 -12.71621 -12.53748 -12.15902 -11.93961 -11.92485 -11.80287 -11.55948 -11.12047 -11.06855 -11.01337 -10.91979 -10.50876 -10.40085 -10.28078 -9.79358 -9.72513 -9.59137 -8.85473 -8.67323 -8.59789 -8.00015 -7.07985 -5.91018 -3.20636 1.31915 1.34895 2.57325 2.81920 3.16978 3.30179 3.38545 3.45212 3.46930 3.76694 4.02914 4.37617 4.50795 4.57811 4.60073 4.70646 4.89463 4.97072 4.99910 5.15433 5.23549 5.25091 5.32953 5.40498 5.41962 5.49064 5.54823 5.69476 5.74365 5.84489 6.04733 6.10236 6.13749 6.17064 6.22877 6.39596 6.45928 6.49459 6.53920 6.61522 6.68331 6.74568 6.86939 7.39655 7.63985 7.69425 8.26103 8.33674 9.38584 9.89372 10.24875 11.30271 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012064 B = 0.004179 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.359255 B = 6698.775005 C = 7869.791706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.064 3.936 3 H 0.094 0.906 4 O -0.297 6.297 5 C 0.062 3.938 6 C -0.116 4.116 7 C -0.118 4.118 8 C -0.121 4.121 9 C -0.111 4.111 10 C 0.065 3.935 11 O -0.283 6.283 12 C 0.034 3.966 13 H 0.149 0.851 14 C 0.493 3.507 15 O -0.523 6.523 16 N -0.704 5.704 17 C 0.152 3.848 18 C 0.140 3.860 19 N -0.683 5.683 20 C -0.244 4.244 21 H 0.075 0.925 22 C -0.004 4.004 23 N -0.928 5.928 24 Si 0.905 3.095 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.279 1.279 28 C -0.196 4.196 29 C -0.207 4.207 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.133 0.867 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.403 0.597 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.389 0.611 41 H 0.257 0.743 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.288 8.925 -4.675 18.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.007 3.993 3 H 0.111 0.889 4 O -0.211 6.211 5 C 0.017 3.983 6 C -0.134 4.134 7 C -0.136 4.136 8 C -0.139 4.139 9 C -0.130 4.130 10 C 0.020 3.980 11 O -0.196 6.196 12 C -0.027 4.027 13 H 0.166 0.834 14 C 0.277 3.723 15 O -0.399 6.399 16 N -0.357 5.357 17 C 0.028 3.972 18 C 0.045 3.955 19 N -0.321 5.321 20 C -0.375 4.375 21 H 0.093 0.907 22 C -0.201 4.201 23 N -0.575 5.575 24 Si 0.735 3.265 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.205 1.205 28 C -0.234 4.234 29 C -0.249 4.249 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.151 0.849 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.239 0.761 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.224 0.776 41 H 0.067 0.933 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 15.792 8.195 -4.319 18.308 hybrid contribution -0.799 0.125 0.616 1.016 sum 14.993 8.320 -3.704 17.542 Atomic orbital electron populations 1.22100 0.89882 1.06393 1.03890 1.23101 0.97675 0.95194 0.83305 0.88859 1.86409 1.21589 1.72938 1.40198 1.18912 0.83998 1.01793 0.93563 1.20437 0.94734 1.02523 0.95754 1.20857 0.93209 1.01018 0.98562 1.20843 1.00058 1.01333 0.91689 1.20361 0.92098 1.01260 0.99231 1.18801 0.93640 1.01855 0.83703 1.86355 1.18410 1.84082 1.30750 1.23303 0.81294 0.95750 1.02319 0.83351 1.20604 0.83072 0.90643 0.77996 1.90736 1.55858 1.46126 1.47149 1.46060 1.08944 1.10055 1.70634 1.21085 0.92207 0.81518 1.02366 1.20127 0.89461 1.01461 0.84435 1.41875 1.23900 1.58958 1.07356 1.19188 1.03376 1.27493 0.87409 0.90743 1.24716 0.95950 1.00998 0.98431 1.69681 1.06880 1.47734 1.33253 0.86208 0.77008 0.78473 0.84805 1.21513 1.21729 1.20481 1.23135 1.02521 0.97950 0.99814 1.23570 1.02812 0.91683 1.06814 0.88780 0.90012 0.89685 0.84939 0.85303 0.85328 0.85100 0.76062 0.90018 0.91850 0.77594 0.93348 0.89524 0.89155 0.88885 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 8.17 37.16 0.30 -1.67 16 2 C 0.06 0.82 3.35 -26.49 -0.09 0.73 16 3 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 4 O -0.30 -4.85 9.72 -32.87 -0.32 -5.17 16 5 C 0.06 1.00 6.16 -39.14 -0.24 0.76 16 6 C -0.12 -1.63 9.96 -39.43 -0.39 -2.03 16 7 C -0.12 -1.39 10.04 -39.59 -0.40 -1.79 16 8 C -0.12 -1.39 10.04 -39.59 -0.40 -1.79 16 9 C -0.11 -1.48 9.96 -39.42 -0.39 -1.87 16 10 C 0.06 1.01 5.34 -39.14 -0.21 0.80 16 11 O -0.28 -4.23 9.97 -46.91 -0.47 -4.70 16 12 C 0.03 0.45 3.37 -27.64 -0.09 0.36 16 13 H 0.15 1.34 8.14 -51.93 -0.42 0.92 16 14 C 0.49 8.23 6.22 -10.98 -0.07 8.16 16 15 O -0.52 -10.85 15.47 -13.85 -0.21 -11.06 16 16 N -0.70 -11.06 4.42 -60.30 -0.27 -11.33 16 17 C 0.15 2.75 5.51 -4.05 -0.02 2.73 16 18 C 0.14 2.58 2.43 -131.78 -0.32 2.26 16 19 N -0.68 -15.65 5.61 -47.20 -0.26 -15.91 16 20 C -0.24 -6.38 9.49 -15.06 -0.14 -6.52 16 21 H 0.07 1.96 6.31 -52.49 -0.33 1.63 16 22 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 23 N -0.93 -26.54 13.08 55.49 0.73 -25.82 16 24 Si 0.90 22.09 29.56 -169.99 -5.02 17.07 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 C -0.20 -2.96 10.10 -26.73 -0.27 -3.23 16 29 C -0.21 -3.48 10.11 -26.69 -0.27 -3.75 16 30 H 0.09 1.46 6.17 -51.93 -0.32 1.14 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.73 7.94 -51.93 -0.41 0.32 16 33 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 36 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 37 H 0.40 5.55 6.40 -40.82 -0.26 5.29 16 38 H 0.08 1.74 6.32 -51.93 -0.33 1.41 16 39 H 0.06 1.09 7.95 -51.93 -0.41 0.68 16 40 H 0.39 9.46 8.00 -40.82 -0.33 9.13 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.09 1.36 8.14 -51.92 -0.42 0.94 16 44 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 45 H 0.08 1.24 8.09 -51.93 -0.42 0.82 16 LS Contribution 371.46 15.07 5.60 5.60 Total: -1.00 -32.79 371.46 -9.51 -42.30 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -6.18 Total: 16.09 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -3.10 Total: -7.07 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.19 Total: -53.06 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -1.00 Total: -20.92 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.79 -9.51 -42.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754533695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.477 kcal (2) G-P(sol) polarization free energy of solvation -32.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds