Wall clock time and date at job start Tue Mar 31 2020 17:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.74051 * 2 1 4 4 O 1.43258 * 109.77436 * 120.62334 * 2 1 3 5 5 C 1.36111 * 116.71420 * 165.92060 * 4 2 1 6 6 C 1.38700 * 119.39038 * 162.82354 * 5 4 2 7 7 C 1.38193 * 120.06963 * 179.85743 * 6 5 4 8 8 C 1.38256 * 120.10985 * 359.96658 * 7 6 5 9 9 C 1.38198 * 120.11430 * 0.05832 * 8 7 6 10 10 C 1.38705 * 120.06540 * 0.02562 * 9 8 7 11 11 O 1.36112 * 119.39665 * 179.80236 * 10 9 8 12 12 C 1.43170 * 116.71808 * 162.94375 * 11 10 9 13 13 H 1.08998 * 109.70811 * 165.86653 * 12 11 10 14 14 C 1.50700 * 109.70606 * 286.44475 * 12 11 10 15 15 O 1.21280 * 120.00265 * 12.74567 * 14 12 11 16 16 N 1.34782 * 119.99963 * 192.74432 * 14 12 11 17 17 C 1.46496 * 120.00040 * 174.93616 * 16 14 12 18 18 C 1.52996 * 109.47372 * 185.10484 * 17 16 14 19 19 N 1.46501 * 115.56133 * 279.91235 * 18 17 16 20 20 C 1.36938 * 119.99950 * 320.09079 * 19 18 17 21 21 H 1.07996 * 119.99780 * 3.01924 * 20 19 18 22 22 C 1.38807 * 119.99929 * 183.01658 * 20 19 18 23 23 N 1.31622 * 120.00102 * 5.39345 * 22 20 19 24 24 Si 1.86800 * 119.99903 * 185.39625 * 22 20 19 25 25 H 1.48507 * 109.47345 * 94.98175 * 24 22 20 26 26 H 1.48501 * 109.47295 * 214.98131 * 24 22 20 27 27 H 1.48494 * 109.47191 * 334.98509 * 24 22 20 28 28 C 1.52999 * 117.49661 * 65.59568 * 18 17 16 29 29 C 1.53004 * 60.03315 * 107.50573 * 28 18 17 30 30 H 1.08997 * 109.47010 * 187.59447 * 1 2 3 31 31 H 1.08995 * 109.47397 * 307.59643 * 1 2 3 32 32 H 1.09006 * 109.47132 * 67.59677 * 1 2 3 33 33 H 1.07999 * 119.96367 * 359.83069 * 6 5 4 34 34 H 1.07997 * 119.94559 * 179.97438 * 7 6 5 35 35 H 1.07995 * 119.94354 * 180.02562 * 8 7 6 36 36 H 1.08003 * 119.96624 * 180.02562 * 9 8 7 37 37 H 0.97002 * 119.99752 * 354.93538 * 16 14 12 38 38 H 1.09000 * 109.47351 * 65.10444 * 17 16 14 39 39 H 1.08997 * 109.47498 * 305.10495 * 17 16 14 40 40 H 0.97003 * 119.99964 * 140.09511 * 19 18 17 41 41 H 0.97005 * 119.99560 * 180.02562 * 23 22 20 42 42 H 1.08994 * 117.50330 * 0.02562 * 28 18 17 43 43 H 1.09009 * 117.49906 * 215.00334 * 28 18 17 44 44 H 1.08999 * 117.49931 * 107.47259 * 29 28 18 45 45 H 1.08997 * 117.49724 * 252.47572 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 8 2.0147 -0.6867 1.1601 5 6 3.3315 -1.0313 1.1616 6 6 3.9468 -1.3633 2.3594 7 6 5.2823 -1.7181 2.3768 8 6 6.0084 -1.7439 1.2005 9 6 5.4015 -1.4138 0.0036 10 6 4.0619 -1.0550 -0.0205 11 8 3.4789 -0.7285 -1.2063 12 6 2.0477 -0.7355 -1.2434 13 1 1.7009 -0.2264 -2.1427 14 6 1.5461 -2.1566 -1.2386 15 8 2.3039 -3.0662 -0.9756 16 7 0.2554 -2.4166 -1.5265 17 6 -0.2069 -3.8028 -1.6309 18 6 -1.6670 -3.8205 -2.0877 19 7 -2.6599 -3.5642 -1.0415 20 6 -2.4936 -4.1021 0.2068 21 1 -1.6066 -4.6746 0.4343 22 6 -3.4651 -3.9114 1.1798 23 7 -4.5929 -3.3057 0.8738 24 14 -3.1718 -4.5144 2.9233 25 1 -2.6325 -3.4029 3.7474 26 1 -4.4536 -4.9859 3.5062 27 1 -2.1961 -5.6336 2.9024 28 6 -1.9733 -3.3026 -3.4944 29 6 -2.0485 -4.8019 -3.1989 30 1 -0.3633 -1.0186 0.1358 31 1 -0.3634 0.6269 0.8142 32 1 -0.3634 0.3917 -0.9502 33 1 3.3818 -1.3440 3.2796 34 1 5.7596 -1.9758 3.3107 35 1 7.0518 -2.0220 1.2171 36 1 5.9709 -1.4351 -0.9139 37 1 -0.3675 -1.6859 -1.6645 38 1 -0.1248 -4.2875 -0.6580 39 1 0.4071 -4.3370 -2.3559 40 1 -3.4351 -3.0135 -1.2330 41 1 -5.2716 -3.1722 1.5539 42 1 -1.1347 -2.9497 -4.0946 43 1 -2.9135 -2.7708 -3.6414 44 1 -3.0380 -5.2564 -3.1508 45 1 -1.2595 -5.4350 -3.6047 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754533695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:19 Heat of formation + Delta-G solvation = -53.089136 kcal Electronic energy + Delta-G solvation = -29641.945751 eV Core-core repulsion = 25625.927288 eV Total energy + Delta-G solvation = -4016.018462 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.79472 -40.57047 -39.11447 -38.61846 -38.19589 -35.58324 -35.04274 -33.72339 -31.72111 -31.68335 -30.10325 -29.15019 -27.36823 -25.96372 -24.65846 -23.70937 -23.36817 -22.77127 -21.27236 -20.48040 -19.94768 -19.30695 -18.95639 -18.09856 -17.65642 -17.25973 -16.74987 -16.49123 -16.14092 -16.04868 -15.75936 -15.58628 -15.51074 -15.00800 -14.86119 -14.74403 -14.70578 -14.19388 -13.72101 -13.69395 -13.57957 -13.41648 -13.05281 -12.89864 -12.85038 -12.78017 -12.55852 -12.33773 -12.22673 -12.10327 -12.06012 -11.69658 -11.43356 -11.11987 -11.08373 -10.64012 -10.08397 -9.63090 -9.05539 -8.95009 -8.00124 -5.26230 0.30585 0.34360 1.33374 1.40636 1.43492 1.50026 1.74716 2.11237 2.17596 2.48807 2.76419 3.02268 3.05309 3.39860 3.50773 3.57657 3.62496 3.67196 3.79574 3.97824 4.00842 4.10435 4.12860 4.28068 4.31736 4.42097 4.47745 4.61707 4.68030 4.72298 4.82534 4.88472 4.92336 4.98972 5.12923 5.13869 5.18713 5.24108 5.32530 5.40390 5.50106 5.53810 5.69045 5.85484 6.22693 6.32843 6.45971 7.07436 7.30694 8.01173 8.26018 9.21802 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012064 B = 0.004179 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.359255 B = 6698.775005 C = 7869.791706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.062 3.938 3 H 0.121 0.879 4 O -0.327 6.327 5 C 0.034 3.966 6 C -0.138 4.138 7 C -0.114 4.114 8 C -0.115 4.115 9 C -0.123 4.123 10 C 0.040 3.960 11 O -0.289 6.289 12 C 0.037 3.963 13 H 0.196 0.804 14 C 0.490 3.510 15 O -0.570 6.570 16 N -0.692 5.692 17 C 0.163 3.837 18 C 0.111 3.889 19 N -0.692 5.692 20 C -0.229 4.229 21 H 0.065 0.935 22 C -0.057 4.057 23 N -0.958 5.958 24 Si 0.952 3.048 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.279 1.279 28 C -0.157 4.157 29 C -0.205 4.205 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.123 0.877 33 H 0.134 0.866 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.146 0.854 37 H 0.414 0.586 38 H 0.039 0.961 39 H 0.075 0.925 40 H 0.381 0.619 41 H 0.252 0.748 42 H 0.118 0.882 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.990 9.952 -6.181 20.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.005 3.995 3 H 0.139 0.861 4 O -0.243 6.243 5 C -0.011 4.011 6 C -0.157 4.157 7 C -0.132 4.132 8 C -0.133 4.133 9 C -0.141 4.141 10 C -0.004 4.004 11 O -0.203 6.203 12 C -0.022 4.022 13 H 0.213 0.787 14 C 0.275 3.725 15 O -0.449 6.449 16 N -0.346 5.346 17 C 0.038 3.962 18 C 0.018 3.982 19 N -0.329 5.329 20 C -0.361 4.361 21 H 0.083 0.917 22 C -0.250 4.250 23 N -0.608 5.608 24 Si 0.782 3.218 25 H -0.219 1.219 26 H -0.218 1.218 27 H -0.204 1.204 28 C -0.195 4.195 29 C -0.246 4.246 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.142 0.858 33 H 0.152 0.848 34 H 0.178 0.822 35 H 0.183 0.817 36 H 0.164 0.836 37 H 0.252 0.748 38 H 0.058 0.942 39 H 0.093 0.907 40 H 0.215 0.785 41 H 0.061 0.939 42 H 0.137 0.863 43 H 0.114 0.886 44 H 0.096 0.904 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 17.512 9.229 -5.866 20.646 hybrid contribution -1.230 -0.241 1.036 1.626 sum 16.283 8.988 -4.829 19.215 Atomic orbital electron populations 1.22122 0.89507 1.04076 1.06126 1.23381 0.97865 0.96094 0.82115 0.86130 1.86353 1.22201 1.73702 1.42008 1.19248 0.84084 1.03203 0.94553 1.20760 0.96087 1.03291 0.95540 1.21284 0.92275 0.99456 1.00216 1.21311 1.01648 0.99596 0.90763 1.20772 0.91648 1.00964 1.00760 1.19119 0.94563 1.03047 0.83717 1.86333 1.19106 1.84079 1.30737 1.23566 0.80715 0.93445 1.04523 0.78709 1.21312 0.82663 0.91915 0.76590 1.90704 1.57055 1.47995 1.49186 1.45962 1.09085 1.09456 1.70095 1.20815 0.92366 0.82724 1.00318 1.20301 0.88405 1.04581 0.84866 1.41848 1.24700 1.58905 1.07467 1.19318 1.02218 1.25784 0.88784 0.91686 1.25238 0.96275 1.02488 1.01039 1.69773 1.07542 1.49790 1.33665 0.85448 0.76568 0.77822 0.81927 1.21874 1.21815 1.20435 1.23216 1.03769 0.96356 0.96191 1.23557 1.02606 0.93188 1.05279 0.92718 0.89886 0.85840 0.84837 0.82153 0.81703 0.83576 0.74768 0.94220 0.90726 0.78528 0.93917 0.86342 0.88592 0.90376 0.88056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 8.17 71.98 0.59 -3.08 16 2 C 0.06 1.51 3.35 30.75 0.10 1.61 16 3 H 0.12 2.27 8.14 -2.38 -0.02 2.25 16 4 O -0.33 -10.91 9.72 -82.59 -0.80 -11.71 16 5 C 0.03 1.10 6.16 22.56 0.14 1.24 16 6 C -0.14 -3.92 9.96 22.37 0.22 -3.70 16 7 C -0.11 -2.51 10.04 22.26 0.22 -2.29 16 8 C -0.12 -2.39 10.04 22.26 0.22 -2.17 16 9 C -0.12 -3.13 9.96 22.37 0.22 -2.91 16 10 C 0.04 1.23 5.34 22.56 0.12 1.35 16 11 O -0.29 -8.33 9.97 -69.18 -0.69 -9.02 16 12 C 0.04 0.93 3.37 30.00 0.10 1.03 16 13 H 0.20 2.79 8.14 -2.39 -0.02 2.77 16 14 C 0.49 16.11 6.22 87.66 0.55 16.66 16 15 O -0.57 -24.06 15.47 15.53 0.24 -23.82 16 16 N -0.69 -21.24 4.42 -463.07 -2.04 -23.29 16 17 C 0.16 5.86 5.51 86.38 0.48 6.34 16 18 C 0.11 3.99 2.43 3.63 0.01 3.99 16 19 N -0.69 -31.89 5.61 -303.24 -1.70 -33.60 16 20 C -0.23 -12.24 9.49 84.03 0.80 -11.44 16 21 H 0.07 3.55 6.31 -2.91 -0.02 3.54 16 22 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 23 N -0.96 -55.82 13.08 21.65 0.28 -55.54 16 24 Si 0.95 46.55 29.56 68.60 2.03 48.57 16 25 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 26 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 27 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 28 C -0.16 -4.27 10.10 30.60 0.31 -3.96 16 29 C -0.20 -6.51 10.11 30.62 0.31 -6.20 16 30 H 0.05 1.70 6.17 -2.39 -0.01 1.69 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.12 1.76 7.94 -2.38 -0.02 1.74 16 33 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 34 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 35 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 37 H 0.41 10.75 6.40 -92.71 -0.59 10.15 16 38 H 0.04 1.76 6.32 -2.39 -0.02 1.74 16 39 H 0.07 2.50 7.95 -2.39 -0.02 2.48 16 40 H 0.38 18.64 8.00 -92.71 -0.74 17.90 16 41 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 42 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.10 2.58 8.14 -2.38 -0.02 2.56 16 44 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 45 H 0.10 2.82 8.09 -2.39 -0.02 2.80 16 Total: -1.00 -74.86 371.46 1.87 -72.99 By element: Atomic # 1 Polarization: 41.96 SS G_CDS: -0.30 Total: 41.66 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 4.86 Total: -6.25 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -3.46 Total: -112.42 kcal Atomic # 8 Polarization: -43.30 SS G_CDS: -1.25 Total: -44.55 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal Total: -74.86 1.87 -72.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754533695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.900 kcal (2) G-P(sol) polarization free energy of solvation -74.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds